Wall clock time and date at job start Mon Mar 30 2020 03:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48491 * 109.47062 * 239.99901 * 3 2 1 5 5 H 1.48506 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47028 * 119.99709 * 3 2 1 7 7 C 1.37873 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47205 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47312 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47579 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99601 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00281 * 180.02562 * 12 11 10 15 15 C 1.46919 * 120.63234 * 0.02562 * 14 12 11 16 16 C 1.53195 * 108.77845 * 233.62780 * 15 14 12 17 17 C 1.53039 * 109.31257 * 305.36660 * 16 15 14 18 18 C 1.53046 * 109.52798 * 61.36716 * 17 16 15 19 19 H 1.08998 * 109.49692 * 58.57850 * 18 17 16 20 20 O 1.42900 * 109.49686 * 178.67980 * 18 17 16 21 21 C 1.46931 * 120.63154 * 180.02562 * 14 12 11 22 22 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46791 * 59.99634 * 9 7 2 24 24 H 1.08999 * 109.46850 * 299.99695 * 9 7 2 25 25 H 1.09005 * 109.47159 * 60.00332 * 10 9 7 26 26 H 1.08995 * 109.47204 * 300.00356 * 10 9 7 27 27 H 1.09000 * 109.47087 * 59.99981 * 11 10 9 28 28 H 1.08995 * 109.47371 * 300.00369 * 11 10 9 29 29 H 1.08997 * 109.59005 * 113.84256 * 15 14 12 30 30 H 1.09002 * 109.70256 * 353.48493 * 15 14 12 31 31 H 1.08997 * 109.50026 * 185.40903 * 16 15 14 32 32 H 1.09000 * 109.49142 * 65.31548 * 16 15 14 33 33 H 1.09002 * 109.46050 * 181.38302 * 17 16 15 34 34 H 1.09004 * 109.46034 * 301.35518 * 17 16 15 35 35 H 0.96707 * 113.99505 * 299.99814 * 20 18 17 36 36 H 1.08998 * 109.58959 * 246.15740 * 21 14 12 37 37 H 1.09003 * 109.58181 * 6.44223 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4595 -6.1325 0.0018 13 8 3.6520 -5.9109 0.0013 14 7 2.0103 -7.4031 0.0019 15 6 0.5689 -7.6875 0.0009 16 6 0.2506 -8.6264 1.1688 17 6 1.1368 -9.8705 1.0740 18 6 2.6078 -9.4595 1.1717 19 1 2.7782 -8.9384 2.1137 20 8 3.4334 -10.6244 1.1140 21 6 2.9527 -8.5304 0.0031 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8719 -3.6043 -0.8894 27 1 0.8533 -5.0451 -0.8886 28 1 0.8539 -5.0446 0.8913 29 1 0.2914 -8.1659 -0.9384 30 1 0.0109 -6.7583 0.1165 31 1 -0.7975 -8.9219 1.1229 32 1 0.4434 -8.1133 2.1109 33 1 0.8951 -10.5515 1.8901 34 1 0.9617 -10.3694 0.1208 35 1 3.2671 -11.2598 1.8239 36 1 2.8694 -9.0774 -0.9360 37 1 3.9699 -8.1561 0.1190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594233268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:20 Heat of formation + Delta-G solvation = -134.268237 kcal Electronic energy + Delta-G solvation = -17338.799268 eV Core-core repulsion = 14500.037040 eV Total energy + Delta-G solvation = -2838.762228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33841 -39.12065 -36.85345 -36.15801 -34.08703 -33.34090 -31.40657 -29.53958 -26.78900 -25.40440 -23.87320 -22.52188 -21.56869 -19.97391 -18.60860 -18.31658 -17.91605 -16.93300 -16.66609 -16.45870 -15.82537 -15.61201 -15.15452 -14.91170 -14.46247 -14.11592 -13.93887 -13.80069 -13.60960 -13.13038 -12.93551 -12.61638 -12.51655 -12.43083 -12.06809 -11.88977 -11.81145 -11.56718 -11.45227 -11.24362 -10.86338 -10.78492 -10.53505 -9.75039 -8.19798 -6.29656 1.39958 1.42737 1.50828 1.55203 1.84232 2.42084 3.13159 3.32720 3.52301 3.79225 3.83910 3.96263 4.11572 4.16537 4.22709 4.26031 4.47042 4.59201 4.73453 4.76511 4.80465 4.93424 4.95050 5.03373 5.08479 5.09303 5.18554 5.34743 5.49208 5.54501 5.75353 5.86521 6.25544 6.32228 6.82216 6.85118 7.11637 7.38849 8.91474 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.004055 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.743475 B = 6903.294110 C = 7273.208870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.084 4.084 11 C -0.125 4.125 12 C 0.515 3.485 13 O -0.586 6.586 14 N -0.608 5.608 15 C 0.092 3.908 16 C -0.130 4.130 17 C -0.143 4.143 18 C 0.097 3.903 19 H 0.050 0.950 20 O -0.580 6.580 21 C 0.114 3.886 22 H 0.265 0.735 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 -22.480 2.723 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.122 4.122 11 C -0.165 4.165 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.343 5.343 15 C -0.029 4.029 16 C -0.168 4.168 17 C -0.181 4.181 18 C 0.038 3.962 19 H 0.068 0.932 20 O -0.388 6.388 21 C -0.009 4.009 22 H 0.074 0.926 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.950 -21.973 2.203 22.169 hybrid contribution 0.319 0.776 0.467 0.960 sum -1.631 -21.197 2.670 21.426 Atomic orbital electron populations 1.70050 1.07427 1.27863 1.51453 1.25876 0.95827 1.02952 0.94635 0.85575 0.78424 0.78488 0.79019 1.19511 1.20252 1.19495 1.21665 0.93318 0.92891 1.50946 0.93198 1.19003 0.94120 0.92155 0.95661 1.21187 0.97717 0.93079 1.00197 1.21694 0.97792 0.91317 1.05662 1.21235 0.89390 0.84578 0.74318 1.90658 1.19224 1.85019 1.51668 1.48130 1.08511 1.04405 1.73246 1.22173 0.78324 1.01891 1.00531 1.21910 1.01590 0.95319 0.98023 1.22219 0.93116 0.98527 1.04228 1.21973 0.90948 0.86286 0.97034 0.93232 1.86423 1.63138 1.32790 1.56471 1.21297 0.93758 0.86871 0.99016 0.92621 0.97907 0.97864 0.94239 0.94242 0.87212 0.87183 0.89267 0.88129 0.87398 0.91792 0.89181 0.90367 0.74931 0.90187 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.08 -3.75 4.44 30.59 0.14 -3.61 16 11 C -0.13 -4.14 4.05 29.85 0.12 -4.01 16 12 C 0.51 17.35 7.70 87.66 0.67 18.03 16 13 O -0.59 -25.23 15.39 -3.06 -0.05 -25.28 16 14 N -0.61 -15.14 2.97 -818.85 -2.43 -17.57 16 15 C 0.09 1.48 6.34 86.36 0.55 2.03 16 16 C -0.13 -1.54 6.08 30.67 0.19 -1.35 16 17 C -0.14 -1.65 5.51 30.62 0.17 -1.49 16 18 C 0.10 1.75 3.62 30.68 0.11 1.86 16 19 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 20 O -0.58 -9.97 13.32 -148.98 -1.98 -11.95 16 21 C 0.11 2.76 6.09 86.37 0.53 3.28 16 22 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 23 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 24 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 25 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 26 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.11 3.17 7.94 -2.39 -0.02 3.15 16 28 H 0.11 3.16 7.70 -2.39 -0.02 3.14 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.55 5.95 -2.39 -0.01 1.54 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.40 2.99 9.08 -74.05 -0.67 2.31 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.03 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -75.03 302.39 1.53 -73.49 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.37 Total: 5.09 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 3.31 Total: -15.23 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -2.15 Total: -73.47 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -2.03 Total: -37.23 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.03 1.53 -73.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594233268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.776 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds