Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00272 * 2 1 4 4 C 1.53000 * 113.28138 * 313.06889 * 3 2 1 5 5 C 1.53488 * 114.20506 * 179.97438 * 3 2 1 6 6 N 1.47062 * 87.98709 * 220.34869 * 5 3 2 7 7 C 1.34784 * 136.05762 * 207.08992 * 6 5 3 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46907 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00411 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99549 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99914 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00270 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47066 * 90.00098 * 16 14 12 18 18 H 1.48505 * 109.47132 * 210.00063 * 16 14 12 19 19 H 1.48500 * 109.46729 * 329.99969 * 16 14 12 20 20 C 1.47061 * 87.88485 * 27.34441 * 6 5 3 21 21 H 1.09002 * 109.47153 * 300.00530 * 1 2 3 22 22 H 1.09006 * 109.46950 * 59.99724 * 1 2 3 23 23 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46404 * 286.92833 * 4 3 2 25 25 H 1.08997 * 109.47037 * 46.93055 * 4 3 2 26 26 H 1.08999 * 109.46561 * 166.93312 * 4 3 2 27 27 H 1.09008 * 113.46718 * 105.56749 * 5 3 2 28 28 H 1.09000 * 113.47420 * 335.12614 * 5 3 2 29 29 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 30 30 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 31 31 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 32 32 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 33 33 H 1.08999 * 109.46783 * 300.00124 * 11 10 9 34 34 H 1.09000 * 109.46608 * 60.00231 * 11 10 9 35 35 H 0.96998 * 120.00171 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.47097 * 87.44038 * 20 6 5 37 37 H 1.09001 * 113.46791 * 217.88377 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3796 2.2483 -1.0267 5 6 3.5452 1.3108 0.0006 6 7 3.4892 2.4309 0.9519 7 6 4.2835 3.4710 1.2744 8 8 5.3409 3.6269 0.7013 9 6 3.8576 4.4402 2.3469 10 6 4.9300 5.5183 2.5151 11 6 4.4974 6.5027 3.6036 12 6 5.5541 7.5642 3.7697 13 1 6.4449 7.5395 3.1598 14 6 5.3835 8.5669 4.7006 15 7 6.3054 9.4936 4.8452 16 14 3.8429 8.6093 5.7562 17 1 4.0744 7.8335 7.0010 18 1 3.5190 10.0165 6.1030 19 1 2.7108 8.0117 5.0037 20 6 2.1881 1.9131 1.4012 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7004 1.9616 -2.0283 25 1 0.2935 2.1834 -0.9605 26 1 1.6957 3.2713 -0.8227 27 1 3.9787 1.5806 -0.9625 28 1 3.9824 0.4054 0.4215 29 1 2.9151 4.9073 2.0610 30 1 3.7276 3.9064 3.2883 31 1 5.8728 5.0516 2.8008 32 1 5.0595 6.0521 1.5736 33 1 3.5548 6.9694 3.3175 34 1 4.3677 5.9691 4.5452 35 1 6.1856 10.1989 5.5003 36 1 2.2674 1.1664 2.1913 37 1 1.4654 2.6959 1.6313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594333926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = -50.571228 kcal Electronic energy + Delta-G solvation = -17205.155462 eV Core-core repulsion = 14370.022609 eV Total energy + Delta-G solvation = -2835.132853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95112 -38.62432 -36.59722 -34.30209 -32.11046 -30.84422 -28.89190 -27.78850 -26.61956 -26.08633 -23.36699 -20.71092 -19.96529 -18.79606 -17.48018 -16.78856 -16.60201 -16.07813 -15.62325 -15.25103 -14.95159 -14.15117 -14.08411 -13.77626 -13.24465 -13.04553 -12.67027 -12.58080 -12.39585 -12.10511 -11.99471 -11.72083 -11.60627 -10.99497 -10.85638 -10.78753 -10.10338 -9.96753 -9.82098 -9.70227 -9.45306 -9.13573 -8.81624 -8.50781 -6.00363 -3.98184 2.62056 2.76580 3.31587 3.38533 3.41353 3.42556 3.88449 4.23732 4.47237 4.51718 4.76076 4.93408 4.99383 5.12314 5.17811 5.23281 5.32793 5.34694 5.37403 5.44523 5.47279 5.51261 5.60627 5.71890 5.75115 6.10362 6.55407 6.68656 6.76104 6.91488 7.36579 7.45300 7.66006 7.82873 8.28771 8.59633 9.06467 9.61564 11.13375 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.004214 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.242178 B = 6643.099913 C = 7080.293071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.070 3.930 4 C -0.157 4.157 5 C 0.118 3.882 6 N -0.649 5.649 7 C 0.547 3.453 8 O -0.528 6.528 9 C -0.133 4.133 10 C -0.088 4.088 11 C -0.014 4.014 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.064 3.936 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.080 3.920 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.091 0.909 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 -19.186 -9.196 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.284 6.284 3 C 0.030 3.970 4 C -0.214 4.214 5 C -0.005 4.005 6 N -0.388 5.388 7 C 0.338 3.662 8 O -0.403 6.403 9 C -0.172 4.172 10 C -0.126 4.126 11 C -0.051 4.051 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.044 4.044 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.483 -18.889 -9.347 25.572 hybrid contribution -1.013 0.231 0.768 1.292 sum -15.497 -18.659 -8.579 25.727 Atomic orbital electron populations 1.22817 0.80827 1.02908 1.00500 1.87955 1.20085 1.25699 1.94703 1.23221 0.94394 0.84294 0.95130 1.21986 1.01164 0.99637 0.98608 1.22918 0.92732 0.90063 0.94813 1.49401 1.22536 1.25951 1.40926 1.20800 0.82353 0.79556 0.83455 1.90717 1.22495 1.73580 1.53534 1.21826 1.02387 0.96602 0.96421 1.21301 0.96156 0.94427 1.00746 1.19602 0.97243 0.94659 0.93607 1.21161 1.05417 1.08360 1.20750 0.90898 1.25053 0.96316 0.95341 0.96933 1.69922 1.34273 1.14544 1.35619 0.86758 0.84291 0.77108 0.80975 1.20329 1.21419 1.19085 1.23685 0.85221 0.97992 0.97514 0.93699 0.93344 0.89440 0.90949 0.91153 0.90476 0.89738 0.89126 0.89436 0.89387 0.92008 0.91976 0.96656 0.97086 0.92780 0.89048 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.36 101.05 1.05 1.19 16 2 O -0.37 -3.20 10.71 -35.23 -0.38 -3.58 16 3 C 0.07 0.62 1.56 -89.97 -0.14 0.48 16 4 C -0.16 -1.20 8.97 37.16 0.33 -0.86 16 5 C 0.12 1.27 8.04 -8.52 -0.07 1.20 16 6 N -0.65 -8.32 3.50 -185.07 -0.65 -8.97 16 7 C 0.55 9.12 8.08 -10.98 -0.09 9.03 16 8 O -0.53 -10.99 16.76 5.56 0.09 -10.89 16 9 C -0.13 -2.16 5.53 -27.89 -0.15 -2.31 16 10 C -0.09 -1.87 4.44 -26.73 -0.12 -1.99 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 12 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 13 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -28.52 13.96 55.43 0.77 -27.75 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 20 C 0.08 0.74 7.82 -8.38 -0.07 0.68 16 21 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.05 0.24 6.36 -51.93 -0.33 -0.09 16 23 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.42 6.12 -51.93 -0.32 0.10 16 26 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 27 H 0.08 0.92 8.12 -51.92 -0.42 0.50 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -34.55 308.02 -6.04 -40.59 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.06 Total: -4.39 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.20 Total: -6.83 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.13 Total: -36.72 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.28 Total: -14.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.55 -6.04 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.979 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds