Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00272 * 2 1 4 4 C 1.53000 * 113.28138 * 313.06889 * 3 2 1 5 5 C 1.53488 * 114.20506 * 179.97438 * 3 2 1 6 6 N 1.47062 * 87.98709 * 220.34869 * 5 3 2 7 7 C 1.34784 * 136.05762 * 207.08992 * 6 5 3 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46907 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00411 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99549 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99914 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00270 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47066 * 90.00098 * 16 14 12 18 18 H 1.48505 * 109.47132 * 210.00063 * 16 14 12 19 19 H 1.48500 * 109.46729 * 329.99969 * 16 14 12 20 20 C 1.47061 * 87.88485 * 27.34441 * 6 5 3 21 21 H 1.09002 * 109.47153 * 300.00530 * 1 2 3 22 22 H 1.09006 * 109.46950 * 59.99724 * 1 2 3 23 23 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46404 * 286.92833 * 4 3 2 25 25 H 1.08997 * 109.47037 * 46.93055 * 4 3 2 26 26 H 1.08999 * 109.46561 * 166.93312 * 4 3 2 27 27 H 1.09008 * 113.46718 * 105.56749 * 5 3 2 28 28 H 1.09000 * 113.47420 * 335.12614 * 5 3 2 29 29 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 30 30 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 31 31 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 32 32 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 33 33 H 1.08999 * 109.46783 * 300.00124 * 11 10 9 34 34 H 1.09000 * 109.46608 * 60.00231 * 11 10 9 35 35 H 0.96998 * 120.00171 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.47097 * 87.44038 * 20 6 5 37 37 H 1.09001 * 113.46791 * 217.88377 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3796 2.2483 -1.0267 5 6 3.5452 1.3108 0.0006 6 7 3.4892 2.4309 0.9519 7 6 4.2835 3.4710 1.2744 8 8 5.3409 3.6269 0.7013 9 6 3.8576 4.4402 2.3469 10 6 4.9300 5.5183 2.5151 11 6 4.4974 6.5027 3.6036 12 6 5.5541 7.5642 3.7697 13 1 6.4449 7.5395 3.1598 14 6 5.3835 8.5669 4.7006 15 7 6.3054 9.4936 4.8452 16 14 3.8429 8.6093 5.7562 17 1 4.0744 7.8335 7.0010 18 1 3.5190 10.0165 6.1030 19 1 2.7108 8.0117 5.0037 20 6 2.1881 1.9131 1.4012 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7004 1.9616 -2.0283 25 1 0.2935 2.1834 -0.9605 26 1 1.6957 3.2713 -0.8227 27 1 3.9787 1.5806 -0.9625 28 1 3.9824 0.4054 0.4215 29 1 2.9151 4.9073 2.0610 30 1 3.7276 3.9064 3.2883 31 1 5.8728 5.0516 2.8008 32 1 5.0595 6.0521 1.5736 33 1 3.5548 6.9694 3.3175 34 1 4.3677 5.9691 4.5452 35 1 6.1856 10.1989 5.5003 36 1 2.2674 1.1664 2.1913 37 1 1.4654 2.6959 1.6313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594333926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = -75.328716 kcal Electronic energy + Delta-G solvation = -17206.229027 eV Core-core repulsion = 14370.022609 eV Total energy + Delta-G solvation = -2836.206418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83823 -39.76645 -37.40049 -36.15217 -34.15378 -31.83922 -30.28359 -28.70019 -27.38888 -27.00074 -25.07770 -22.10137 -21.29854 -19.77980 -18.88834 -18.35328 -17.69454 -17.05295 -16.56951 -16.31446 -16.14330 -15.75481 -15.24864 -14.77892 -14.47594 -14.38111 -14.02948 -13.83598 -13.37779 -13.17043 -13.02098 -12.83197 -12.69110 -12.51816 -12.28899 -11.81039 -11.75223 -11.53060 -11.49772 -11.34488 -10.98427 -10.75384 -10.53723 -9.83663 -8.27931 -6.33926 1.38488 1.42199 1.52028 1.54260 1.65638 2.39132 2.75020 3.07050 3.19210 3.40790 3.69029 3.98027 4.08077 4.19087 4.38340 4.46619 4.48413 4.54827 4.59682 4.65319 4.68620 4.78807 4.79737 4.85376 4.88209 4.94937 4.98959 5.01853 5.17937 5.52466 5.57637 5.67090 6.19779 6.30018 6.59534 6.74740 7.06376 7.30463 8.89847 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.004214 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.242178 B = 6643.099913 C = 7080.293071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.381 6.381 3 C 0.085 3.915 4 C -0.156 4.156 5 C 0.105 3.895 6 N -0.648 5.648 7 C 0.544 3.456 8 O -0.586 6.586 9 C -0.120 4.120 10 C -0.081 4.081 11 C -0.008 4.008 12 C -0.541 4.541 13 H 0.019 0.981 14 C -0.003 4.003 15 N -0.957 5.957 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.235 1.235 20 C 0.080 3.920 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.105 0.895 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.435 -20.817 -8.270 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.299 6.299 3 C 0.044 3.956 4 C -0.213 4.213 5 C -0.018 4.018 6 N -0.384 5.384 7 C 0.336 3.664 8 O -0.466 6.466 9 C -0.160 4.160 10 C -0.120 4.120 11 C -0.045 4.045 12 C -0.579 4.579 13 H 0.037 0.963 14 C -0.199 4.199 15 N -0.598 5.598 16 Si 0.784 3.216 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.158 1.158 20 C -0.043 4.043 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.592 -20.579 -8.437 28.989 hybrid contribution 0.310 0.670 0.393 0.836 sum -18.282 -19.910 -8.044 28.202 Atomic orbital electron populations 1.23048 0.79070 1.04138 1.01527 1.87937 1.21949 1.25268 1.94792 1.22981 0.92691 0.84747 0.95131 1.21995 1.02487 0.98502 0.98298 1.23147 0.95030 0.89439 0.94141 1.49299 1.23202 1.25104 1.40845 1.20767 0.81942 0.80498 0.83203 1.90695 1.25062 1.75268 1.55605 1.21646 1.01244 0.95325 0.97760 1.21070 0.97059 0.95248 0.98582 1.19533 0.95894 0.93774 0.95296 1.21550 1.05396 1.10652 1.20322 0.96261 1.26211 1.00742 0.94428 0.98557 1.70107 1.37192 1.15643 1.36856 0.85484 0.79507 0.77612 0.78953 1.18902 1.21130 1.15793 1.23954 0.83431 0.98727 0.98151 0.92565 0.92367 0.88268 0.90868 0.88972 0.91653 0.90547 0.88560 0.86549 0.86772 0.94530 0.94336 0.94956 0.95245 0.92464 0.87702 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.36 113.37 1.17 1.32 16 2 O -0.38 -5.54 10.71 -148.98 -1.60 -7.14 16 3 C 0.09 1.27 1.56 -10.37 -0.02 1.25 16 4 C -0.16 -1.97 8.97 71.98 0.65 -1.32 16 5 C 0.11 2.14 8.04 83.17 0.67 2.81 16 6 N -0.65 -15.47 3.50 -858.31 -3.00 -18.47 16 7 C 0.54 17.76 8.08 87.66 0.71 18.47 16 8 O -0.59 -25.22 16.76 -3.03 -0.05 -25.27 16 9 C -0.12 -3.64 5.53 29.85 0.16 -3.48 16 10 C -0.08 -3.48 4.44 30.59 0.14 -3.34 16 11 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 12 C -0.54 -32.82 9.66 25.60 0.25 -32.57 16 13 H 0.02 1.31 7.99 -2.91 -0.02 1.29 16 14 C 0.00 -0.21 5.47 84.65 0.46 0.25 16 15 N -0.96 -62.14 13.96 21.45 0.30 -61.84 16 16 Si 0.96 43.91 27.47 68.60 1.88 45.79 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 20 C 0.08 1.20 7.82 83.26 0.65 1.85 16 21 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 22 H 0.06 0.35 6.36 -2.38 -0.02 0.34 16 23 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.09 0.76 6.12 -2.39 -0.01 0.75 16 26 H 0.06 1.01 7.94 -2.39 -0.02 0.99 16 27 H 0.08 1.67 8.12 -2.38 -0.02 1.65 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 32 H 0.04 1.78 8.10 -2.38 -0.02 1.76 16 33 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 34 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 35 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.17 8.13 -2.39 -0.02 1.15 16 Total: -1.00 -78.97 308.02 3.47 -75.49 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.97 Total: 6.43 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.96 Total: -15.00 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.70 Total: -80.31 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.65 Total: -32.41 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -78.97 3.47 -75.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.166 kcal (2) G-P(sol) polarization free energy of solvation -78.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds