Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46998 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46623 * 120.00092 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.47168 * 110.99936 * 66.04582 * 13 12 11 15 15 C 1.52983 * 108.60629 * 199.59104 * 14 13 12 16 16 C 1.52383 * 109.97336 * 305.51865 * 15 14 13 17 17 O 1.42896 * 114.97680 * 164.30344 * 16 15 14 18 18 C 1.52364 * 119.50825 * 310.39117 * 16 15 14 19 19 C 1.52408 * 118.98779 * 20.95697 * 16 15 14 20 20 H 1.09007 * 117.38119 * 143.23825 * 19 16 15 21 21 C 1.46745 * 111.00188 * 189.12712 * 13 12 11 22 22 H 0.97003 * 120.00101 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 24 24 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 25 25 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 26 26 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 27 27 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 28 28 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 29 29 H 1.09000 * 109.61366 * 319.32953 * 14 13 12 30 30 H 1.09001 * 109.61779 * 79.85770 * 14 13 12 31 31 H 1.09002 * 109.38542 * 65.67175 * 15 14 13 32 32 H 1.08996 * 109.38852 * 185.36878 * 15 14 13 33 33 H 0.96699 * 113.99810 * 34.41925 * 17 16 15 34 34 H 1.09000 * 117.52123 * 216.06853 * 18 16 15 35 35 H 1.08997 * 117.52309 * 1.22913 * 18 16 15 36 36 H 1.08999 * 109.36112 * 300.73362 * 21 13 12 37 37 H 1.08997 * 109.35804 * 60.33306 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 2.5587 -6.2418 2.4045 15 6 3.2098 -5.6982 3.6777 16 6 4.6441 -6.2016 3.7846 17 8 5.4619 -5.4989 4.7222 18 6 4.9331 -7.6872 3.6087 19 6 5.3535 -6.6835 2.5247 20 1 6.4169 -6.4621 2.4323 21 6 4.5865 -6.7597 1.2050 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 0.9451 -4.9822 -0.8913 26 1 0.9446 -4.9827 0.8887 27 1 3.3221 -5.7956 -0.8418 28 1 2.1820 -6.9375 -0.0904 29 1 1.5709 -5.7979 2.2804 30 1 2.4694 -7.3259 2.4734 31 1 3.2100 -4.6086 3.6471 32 1 2.6428 -6.0342 4.5459 33 1 4.9862 -5.1910 5.5058 34 1 5.7201 -8.1235 4.2237 35 1 4.0897 -8.3419 3.3891 36 1 4.2688 -7.7877 1.0306 37 1 5.2367 -6.4413 0.3902 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595757583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -62.145184 kcal Electronic energy + Delta-G solvation = -17687.124984 eV Core-core repulsion = 14851.490246 eV Total energy + Delta-G solvation = -2835.634738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.05382 -37.23857 -35.93502 -33.84686 -32.60329 -31.22236 -29.31897 -26.87220 -25.11892 -23.75716 -22.24517 -21.67277 -20.80644 -18.84452 -17.40306 -16.34197 -15.90655 -15.63165 -15.13634 -14.71256 -14.34654 -14.24064 -13.99103 -13.61048 -13.45572 -12.82509 -12.74735 -12.34620 -11.87635 -11.54375 -11.44753 -11.30208 -10.99695 -10.89169 -10.78509 -10.65815 -10.44091 -10.03605 -9.84254 -9.22331 -9.04321 -8.73896 -8.12001 -8.06073 -6.05585 -4.06315 3.36680 3.38626 3.43444 3.57420 3.94111 4.02546 4.40117 4.61597 4.70647 4.84777 4.93977 5.15900 5.21203 5.30916 5.35346 5.38247 5.59840 5.60670 5.68529 5.71456 5.76081 5.90388 5.96513 6.02366 6.09229 6.17995 6.25401 6.31849 7.14536 7.21522 7.25023 7.48783 7.59428 7.86437 8.22606 8.67654 9.08434 9.58406 11.06060 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.005379 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.282012 B = 5204.176897 C = 5738.113824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.060 3.940 13 N -0.518 5.518 14 C 0.052 3.948 15 C -0.103 4.103 16 C 0.085 3.915 17 O -0.534 6.534 18 C -0.205 4.205 19 C -0.129 4.129 20 H 0.112 0.888 21 C 0.085 3.915 22 H 0.263 0.737 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.380 0.620 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -15.907 6.293 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.012 4.012 12 C -0.068 4.068 13 N -0.242 5.242 14 C -0.076 4.076 15 C -0.141 4.141 16 C 0.043 3.957 17 O -0.339 6.339 18 C -0.243 4.243 19 C -0.147 4.147 20 H 0.130 0.870 21 C -0.043 4.043 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.020 0.980 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.228 0.772 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.152 -15.383 5.894 17.585 hybrid contribution -0.604 0.127 0.323 0.697 sum 5.548 -15.256 6.218 17.383 Atomic orbital electron populations 1.69957 1.06096 1.27132 1.50894 1.24938 0.94946 0.99365 0.95257 0.86411 0.79309 0.81973 0.78874 1.20039 1.21231 1.20013 1.21034 0.94077 0.89361 1.50377 0.91568 1.20163 0.88839 0.83942 0.95030 1.87963 1.34576 1.12269 1.94986 1.22285 0.93784 0.86386 0.98771 1.22151 0.96348 0.96092 0.92198 1.62173 1.07146 1.52273 1.02612 1.22182 0.97433 0.97474 0.90537 1.21392 0.92030 1.03073 0.97567 1.21140 0.91036 0.91140 0.92359 1.86490 1.38060 1.75408 1.33962 1.23823 1.03660 0.93274 1.03537 1.22529 1.00342 1.02287 0.89590 0.87032 1.21642 0.92450 0.94279 0.95921 0.92716 0.98050 0.98001 0.94237 0.94598 0.89900 0.94351 0.89571 0.94849 0.89065 0.91119 0.77246 0.88496 0.88678 0.94690 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.44 5.69 36.00 0.20 5.64 16 10 O -0.38 -9.34 10.27 -35.23 -0.36 -9.70 16 11 C 0.07 1.22 6.02 37.16 0.22 1.45 16 12 C 0.06 0.90 5.33 -3.83 -0.02 0.88 16 13 N -0.52 -7.95 4.58 -234.65 -1.07 -9.02 16 14 C 0.05 0.69 5.21 -3.69 -0.02 0.67 16 15 C -0.10 -1.31 5.94 -27.06 -0.16 -1.47 16 16 C 0.08 1.09 3.31 -91.56 -0.30 0.79 16 17 O -0.53 -7.01 13.75 -35.23 -0.48 -7.50 16 18 C -0.21 -2.27 9.57 -26.74 -0.26 -2.52 16 19 C -0.13 -1.67 6.21 -90.70 -0.56 -2.23 16 20 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 21 C 0.09 1.10 5.32 -4.00 -0.02 1.08 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.65 6.09 -51.93 -0.32 0.33 16 27 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.09 1.21 5.84 -51.93 -0.30 0.91 16 30 H 0.03 0.39 7.00 -51.93 -0.36 0.02 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.38 3.35 8.95 45.56 0.41 3.76 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.95 7.24 -51.93 -0.38 0.58 16 36 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 37 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -33.39 300.85 -8.14 -41.53 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.14 Total: -0.68 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.34 Total: -9.86 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.34 Total: -35.59 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.85 Total: -17.19 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.39 -8.14 -41.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595757583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.614 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds