Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46998 * 239.99998 * 3 2 1 5 5 H 1.48501 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46623 * 120.00092 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.47168 * 110.99936 * 66.04582 * 13 12 11 15 15 C 1.52983 * 108.60629 * 199.59104 * 14 13 12 16 16 C 1.52383 * 109.97336 * 305.51865 * 15 14 13 17 17 O 1.42896 * 114.97680 * 164.30344 * 16 15 14 18 18 C 1.52364 * 119.50825 * 310.39117 * 16 15 14 19 19 C 1.52408 * 118.98779 * 20.95697 * 16 15 14 20 20 H 1.09007 * 117.38119 * 143.23825 * 19 16 15 21 21 C 1.46745 * 111.00188 * 189.12712 * 13 12 11 22 22 H 0.97003 * 120.00101 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 24 24 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 25 25 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 26 26 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 27 27 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 28 28 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 29 29 H 1.09000 * 109.61366 * 319.32953 * 14 13 12 30 30 H 1.09001 * 109.61779 * 79.85770 * 14 13 12 31 31 H 1.09002 * 109.38542 * 65.67175 * 15 14 13 32 32 H 1.08996 * 109.38852 * 185.36878 * 15 14 13 33 33 H 0.96699 * 113.99810 * 34.41925 * 17 16 15 34 34 H 1.09000 * 117.52123 * 216.06853 * 18 16 15 35 35 H 1.08997 * 117.52309 * 1.22913 * 18 16 15 36 36 H 1.08999 * 109.36112 * 300.73362 * 21 13 12 37 37 H 1.08997 * 109.35804 * 60.33306 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 2.5587 -6.2418 2.4045 15 6 3.2098 -5.6982 3.6777 16 6 4.6441 -6.2016 3.7846 17 8 5.4619 -5.4989 4.7222 18 6 4.9331 -7.6872 3.6087 19 6 5.3535 -6.6835 2.5247 20 1 6.4169 -6.4621 2.4323 21 6 4.5865 -6.7597 1.2050 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 0.9451 -4.9822 -0.8913 26 1 0.9446 -4.9827 0.8887 27 1 3.3221 -5.7956 -0.8418 28 1 2.1820 -6.9375 -0.0904 29 1 1.5709 -5.7979 2.2804 30 1 2.4694 -7.3259 2.4734 31 1 3.2100 -4.6086 3.6471 32 1 2.6428 -6.0342 4.5459 33 1 4.9862 -5.1910 5.5058 34 1 5.7201 -8.1235 4.2237 35 1 4.0897 -8.3419 3.3891 36 1 4.2688 -7.7877 1.0306 37 1 5.2367 -6.4413 0.3902 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595757583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -88.077465 kcal Electronic energy + Delta-G solvation = -17688.249492 eV Core-core repulsion = 14851.490246 eV Total energy + Delta-G solvation = -2836.759246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05662 -38.76111 -37.32439 -35.11728 -34.63378 -32.25161 -30.78885 -28.89419 -26.23471 -24.91015 -24.43721 -22.63618 -22.04585 -19.84819 -18.61441 -18.39330 -17.42584 -17.11274 -16.52886 -16.09014 -15.93698 -15.48066 -15.24461 -14.87688 -14.77716 -14.28015 -13.76202 -13.70428 -13.56071 -13.13562 -12.81918 -12.68108 -12.52589 -12.36982 -12.21346 -12.09092 -11.95851 -11.62323 -11.26636 -10.90412 -10.82478 -10.16983 -10.14050 -9.15635 -8.30930 -6.42569 1.39585 1.44407 1.52786 2.35744 2.61653 2.98528 3.02621 3.05411 3.27273 3.64925 3.75532 3.94205 4.05342 4.19793 4.26135 4.32181 4.43856 4.48790 4.61896 4.67188 4.77073 4.78558 4.84600 4.86093 4.94396 4.99700 5.07509 5.17781 5.20322 5.22642 5.56449 5.99020 6.13879 6.18540 6.58684 6.79741 6.88607 7.29717 8.81151 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.005379 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.282012 B = 5204.176897 C = 5738.113824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.211 3.789 10 O -0.396 6.396 11 C 0.055 3.945 12 C 0.069 3.931 13 N -0.551 5.551 14 C 0.052 3.948 15 C -0.099 4.099 16 C 0.069 3.931 17 O -0.553 6.553 18 C -0.175 4.175 19 C -0.151 4.151 20 H 0.103 0.897 21 C 0.089 3.911 22 H 0.271 0.729 23 H -0.016 1.016 24 H -0.018 1.018 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.395 0.605 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -16.816 6.711 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.136 3.864 10 O -0.316 6.316 11 C -0.022 4.022 12 C -0.059 4.059 13 N -0.276 5.276 14 C -0.076 4.076 15 C -0.137 4.137 16 C 0.027 3.973 17 O -0.361 6.361 18 C -0.213 4.213 19 C -0.169 4.169 20 H 0.121 0.879 21 C -0.038 4.038 22 H 0.079 0.921 23 H 0.002 0.998 24 H 0.000 1.000 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.628 -16.318 6.321 18.713 hybrid contribution -0.779 0.344 0.218 0.879 sum 5.849 -15.974 6.539 18.225 Atomic orbital electron populations 1.70057 1.07661 1.28632 1.50616 1.25917 0.95942 1.03214 0.93940 0.85281 0.78158 0.76951 0.79300 1.19056 1.19732 1.19278 1.21347 0.93927 0.91053 1.52106 0.92469 1.19760 0.88609 0.84955 0.93117 1.87915 1.34697 1.13918 1.95044 1.22668 0.95531 0.84586 0.99427 1.22054 0.95398 0.96105 0.92301 1.62094 1.08278 1.54174 1.03065 1.22202 0.96444 0.98950 0.89986 1.21347 0.92784 1.00935 0.98616 1.21255 0.90754 0.92761 0.92480 1.86441 1.38985 1.75806 1.34888 1.23820 1.03944 0.92007 1.01479 1.22602 0.99986 1.04228 0.90114 0.87917 1.21625 0.91414 0.94984 0.95806 0.92059 0.99826 0.99997 0.93369 0.94076 0.90268 0.90658 0.90856 0.92138 0.92495 0.88410 0.75460 0.87674 0.86935 0.92359 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.98 45.52 29.54 68.60 2.03 47.55 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.55 -33.66 9.43 25.60 0.24 -33.42 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 12.19 5.69 71.24 0.41 12.60 16 10 O -0.40 -20.05 10.27 -148.98 -1.53 -21.58 16 11 C 0.06 2.05 6.02 71.98 0.43 2.48 16 12 C 0.07 1.98 5.33 86.30 0.46 2.44 16 13 N -0.55 -16.31 4.58 -896.31 -4.10 -20.41 16 14 C 0.05 1.30 5.21 86.25 0.45 1.75 16 15 C -0.10 -2.44 5.94 30.38 0.18 -2.26 16 16 C 0.07 1.69 3.31 -11.40 -0.04 1.65 16 17 O -0.55 -14.16 13.75 -148.98 -2.05 -16.21 16 18 C -0.18 -3.36 9.57 30.59 0.29 -3.07 16 19 C -0.15 -3.70 6.21 -10.84 -0.07 -3.77 16 20 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 21 C 0.09 2.15 5.32 86.28 0.46 2.61 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 24 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.49 6.09 -2.39 -0.01 1.47 16 27 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 28 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 29 H 0.07 2.01 5.84 -2.39 -0.01 1.99 16 30 H 0.06 1.19 7.00 -2.39 -0.02 1.17 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.40 6.74 8.95 -74.06 -0.66 6.08 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 1.78 7.24 -2.39 -0.02 1.76 16 36 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 37 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 Total: -1.00 -72.26 300.85 -1.70 -73.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.39 Total: 11.22 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 3.28 Total: -18.04 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -3.82 Total: -76.91 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -3.58 Total: -37.79 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.26 -1.70 -73.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595757583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.112 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds