Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 C 1.53002 * 109.47312 * 240.00123 * 2 1 3 5 5 C 1.53005 * 109.46581 * 299.99941 * 4 2 1 6 6 C 1.53004 * 109.47146 * 299.99681 * 5 4 2 7 7 C 1.52993 * 109.46721 * 60.00220 * 6 5 4 8 8 O 1.42898 * 109.47350 * 60.00235 * 7 6 5 9 9 C 1.50702 * 109.46706 * 179.97438 * 7 6 5 10 10 O 1.21299 * 120.00156 * 95.00036 * 9 7 6 11 11 N 1.34778 * 120.00234 * 274.99693 * 9 7 6 12 12 C 1.37102 * 120.00010 * 179.97438 * 11 9 7 13 13 H 1.07996 * 120.00048 * 0.02562 * 12 11 9 14 14 C 1.38954 * 119.99451 * 180.02562 * 12 11 9 15 15 N 1.31415 * 119.99373 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00427 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47288 * 89.99948 * 16 14 12 18 18 H 1.48499 * 109.47263 * 210.00195 * 16 14 12 19 19 H 1.48503 * 109.47162 * 330.00054 * 16 14 12 20 20 C 1.52994 * 109.47609 * 299.99637 * 7 6 5 21 21 H 1.09000 * 109.46827 * 288.82344 * 1 2 3 22 22 H 1.09000 * 109.47459 * 48.81735 * 1 2 3 23 23 H 1.08998 * 109.47097 * 168.82389 * 1 2 3 24 24 H 1.08996 * 109.46827 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46654 * 300.00105 * 3 2 1 26 26 H 1.08996 * 109.47379 * 60.00107 * 3 2 1 27 27 H 1.08997 * 109.47276 * 59.99376 * 4 2 1 28 28 H 1.08996 * 109.47614 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.46963 * 179.97438 * 5 4 2 30 30 H 1.08996 * 109.46990 * 59.99810 * 5 4 2 31 31 H 1.09000 * 109.46742 * 300.00462 * 6 5 4 32 32 H 1.08998 * 109.46785 * 180.02562 * 6 5 4 33 33 H 0.96699 * 114.00189 * 59.99336 * 8 7 6 34 34 H 0.96999 * 119.99594 * 0.02562 * 11 9 7 35 35 H 0.97000 * 119.99862 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.47494 * 180.02562 * 20 7 6 37 37 H 1.09004 * 109.47181 * 300.00530 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2492 8 8 0.1011 -2.1637 1.2493 9 6 2.0319 -2.8744 2.4797 10 8 3.0454 -2.4956 3.0280 11 7 1.3546 -3.9310 2.9710 12 6 1.8116 -4.5779 4.0901 13 1 2.7139 -4.2406 4.5782 14 6 1.1135 -5.6676 4.5963 15 7 1.5512 -6.2873 5.6693 16 14 -0.4469 -6.2515 3.7516 17 1 -0.1030 -7.2654 2.7226 18 1 -1.3576 -6.8557 4.7570 19 1 -1.1206 -5.0975 3.1038 20 6 2.0400 -0.7212 1.2493 21 1 -0.3633 0.3316 0.9727 22 1 -0.3634 0.6767 -0.7734 23 1 -0.3633 -1.0082 -0.1992 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -0.2075 -2.1392 28 1 3.1300 -0.7216 -1.2491 29 1 1.8930 -2.6775 -2.1394 30 1 0.4400 -2.1637 -1.2491 31 1 3.1300 -2.8849 0.0000 32 1 1.6770 -3.9127 -0.0001 33 1 -0.2923 -3.0471 1.2493 34 1 0.5444 -4.2342 2.5324 35 1 1.0638 -7.0478 6.0229 36 1 1.6771 -0.2075 2.1394 37 1 3.1301 -0.7212 1.2492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597031181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = -103.272433 kcal Electronic energy + Delta-G solvation = -18712.056173 eV Core-core repulsion = 15874.638024 eV Total energy + Delta-G solvation = -2837.418149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31668 -37.77654 -35.54048 -34.08975 -32.54993 -31.64080 -29.90305 -27.02777 -26.27329 -25.32947 -22.63271 -21.38445 -19.28177 -18.90216 -18.31919 -16.60617 -15.84090 -15.36585 -14.68006 -14.43838 -14.07961 -13.91233 -13.52206 -13.37242 -12.83355 -12.61993 -12.36894 -12.21529 -12.10783 -11.76541 -11.59051 -11.50894 -11.25497 -10.88445 -10.82824 -10.66085 -10.27217 -10.20917 -10.11991 -9.91058 -9.77325 -9.61739 -8.28875 -8.24822 -6.36895 -3.88525 2.97704 3.01196 3.11255 3.57208 4.04394 4.32827 4.60924 4.80570 4.83583 5.02360 5.14999 5.25803 5.35518 5.48820 5.52497 5.61995 5.72295 5.80267 5.88107 5.91752 6.01035 6.06813 6.10485 6.16754 6.19541 6.36525 6.40366 6.47499 6.60349 6.62123 6.85167 7.46549 7.77413 8.08945 8.51615 8.87918 9.34945 9.72219 10.75962 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037708 B = 0.007158 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.378903 B = 3910.681603 C = 4149.783630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.140 4.140 7 C 0.129 3.871 8 O -0.542 6.542 9 C 0.429 3.571 10 O -0.572 6.572 11 N -0.581 5.581 12 C -0.307 4.307 13 H 0.120 0.880 14 C 0.043 3.957 15 N -0.878 5.878 16 Si 0.878 3.122 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.268 1.268 20 C -0.075 4.075 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.363 0.637 34 H 0.367 0.633 35 H 0.274 0.726 36 H 0.069 0.931 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 8.357 -14.632 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.179 4.179 7 C 0.085 3.915 8 O -0.348 6.348 9 C 0.215 3.785 10 O -0.455 6.455 11 N -0.220 5.220 12 C -0.436 4.436 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.517 5.517 16 Si 0.704 3.296 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.193 1.193 20 C -0.113 4.113 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.211 0.789 34 H 0.200 0.800 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.333 9.079 -14.080 17.082 hybrid contribution -1.274 -1.326 -0.356 1.873 sum -4.607 7.753 -14.436 17.021 Atomic orbital electron populations 1.22088 0.93858 1.03081 1.00615 1.20520 0.96609 0.94482 0.94686 1.21861 1.00784 0.95728 1.01373 1.21592 1.00325 0.95358 0.97209 1.21532 1.01565 0.95485 0.96719 1.22154 1.02309 0.99031 0.94361 1.21380 0.80701 0.96874 0.92526 1.86760 1.18807 1.32576 1.96678 1.20469 0.86858 0.83298 0.87872 1.90561 1.26274 1.67028 1.61673 1.42213 1.24259 1.28401 1.27125 1.19458 1.11347 1.10143 1.02653 0.86236 1.25064 0.98244 0.96499 0.96272 1.69622 1.39636 1.21196 1.21265 0.86691 0.83278 0.79492 0.80101 1.19543 1.19983 1.19314 1.21365 1.00840 0.91492 0.97568 0.93016 0.94655 0.89542 0.92864 0.93007 0.92711 0.92282 0.92172 0.92251 0.90938 0.90463 0.91585 0.78929 0.79967 0.91508 0.91205 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.12 37.16 0.26 -1.53 16 2 C -0.06 -0.81 0.77 -154.50 -0.12 -0.93 16 3 C -0.14 -1.60 8.45 37.16 0.31 -1.29 16 4 C -0.11 -1.25 4.73 -26.73 -0.13 -1.37 16 5 C -0.12 -1.37 5.59 -26.73 -0.15 -1.52 16 6 C -0.14 -2.06 4.90 -26.73 -0.13 -2.19 16 7 C 0.13 2.22 0.92 -91.78 -0.08 2.13 16 8 O -0.54 -8.42 8.66 -35.23 -0.31 -8.73 16 9 C 0.43 9.87 6.68 -10.98 -0.07 9.79 16 10 O -0.57 -15.55 15.67 5.54 0.09 -15.46 16 11 N -0.58 -13.78 5.00 -10.96 -0.05 -13.84 16 12 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 13 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 14 C 0.04 1.16 5.50 -17.46 -0.10 1.07 16 15 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 16 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 20 C -0.07 -1.23 3.40 -26.73 -0.09 -1.32 16 21 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 22 H 0.03 0.40 8.10 -51.93 -0.42 -0.02 16 23 H 0.09 1.13 3.79 -51.93 -0.20 0.94 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.83 5.94 -51.93 -0.31 0.53 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.36 4.85 7.57 45.56 0.35 5.19 16 34 H 0.37 7.53 4.26 -40.82 -0.17 7.35 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 LS Contribution 284.57 15.07 4.29 4.29 Total: -1.00 -31.55 284.57 -5.31 -36.87 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -4.94 Total: 13.26 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.44 Total: -6.00 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.72 Total: -38.57 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.22 Total: -24.19 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.55 -5.31 -36.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.406 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds