Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 C 1.53002 * 109.47312 * 240.00123 * 2 1 3 5 5 C 1.53005 * 109.46581 * 299.99941 * 4 2 1 6 6 C 1.53004 * 109.47146 * 299.99681 * 5 4 2 7 7 C 1.52993 * 109.46721 * 60.00220 * 6 5 4 8 8 O 1.42898 * 109.47350 * 60.00235 * 7 6 5 9 9 C 1.50702 * 109.46706 * 179.97438 * 7 6 5 10 10 O 1.21299 * 120.00156 * 95.00036 * 9 7 6 11 11 N 1.34778 * 120.00234 * 274.99693 * 9 7 6 12 12 C 1.37102 * 120.00010 * 179.97438 * 11 9 7 13 13 H 1.07996 * 120.00048 * 0.02562 * 12 11 9 14 14 C 1.38954 * 119.99451 * 180.02562 * 12 11 9 15 15 N 1.31415 * 119.99373 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00427 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47288 * 89.99948 * 16 14 12 18 18 H 1.48499 * 109.47263 * 210.00195 * 16 14 12 19 19 H 1.48503 * 109.47162 * 330.00054 * 16 14 12 20 20 C 1.52994 * 109.47609 * 299.99637 * 7 6 5 21 21 H 1.09000 * 109.46827 * 288.82344 * 1 2 3 22 22 H 1.09000 * 109.47459 * 48.81735 * 1 2 3 23 23 H 1.08998 * 109.47097 * 168.82389 * 1 2 3 24 24 H 1.08996 * 109.46827 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46654 * 300.00105 * 3 2 1 26 26 H 1.08996 * 109.47379 * 60.00107 * 3 2 1 27 27 H 1.08997 * 109.47276 * 59.99376 * 4 2 1 28 28 H 1.08996 * 109.47614 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.46963 * 179.97438 * 5 4 2 30 30 H 1.08996 * 109.46990 * 59.99810 * 5 4 2 31 31 H 1.09000 * 109.46742 * 300.00462 * 6 5 4 32 32 H 1.08998 * 109.46785 * 180.02562 * 6 5 4 33 33 H 0.96699 * 114.00189 * 59.99336 * 8 7 6 34 34 H 0.96999 * 119.99594 * 0.02562 * 11 9 7 35 35 H 0.97000 * 119.99862 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.47494 * 180.02562 * 20 7 6 37 37 H 1.09004 * 109.47181 * 300.00530 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2492 8 8 0.1011 -2.1637 1.2493 9 6 2.0319 -2.8744 2.4797 10 8 3.0454 -2.4956 3.0280 11 7 1.3546 -3.9310 2.9710 12 6 1.8116 -4.5779 4.0901 13 1 2.7139 -4.2406 4.5782 14 6 1.1135 -5.6676 4.5963 15 7 1.5512 -6.2873 5.6693 16 14 -0.4469 -6.2515 3.7516 17 1 -0.1030 -7.2654 2.7226 18 1 -1.3576 -6.8557 4.7570 19 1 -1.1206 -5.0975 3.1038 20 6 2.0400 -0.7212 1.2493 21 1 -0.3633 0.3316 0.9727 22 1 -0.3634 0.6767 -0.7734 23 1 -0.3633 -1.0082 -0.1992 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -0.2075 -2.1392 28 1 3.1300 -0.7216 -1.2491 29 1 1.8930 -2.6775 -2.1394 30 1 0.4400 -2.1637 -1.2491 31 1 3.1300 -2.8849 0.0000 32 1 1.6770 -3.9127 -0.0001 33 1 -0.2923 -3.0471 1.2493 34 1 0.5444 -4.2342 2.5324 35 1 1.0638 -7.0478 6.0229 36 1 1.6771 -0.2075 2.1394 37 1 3.1301 -0.7212 1.2492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597031181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = -126.856688 kcal Electronic energy + Delta-G solvation = -18713.078863 eV Core-core repulsion = 15874.638024 eV Total energy + Delta-G solvation = -2838.440839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71774 -39.42088 -36.89635 -36.08776 -33.74410 -33.60363 -31.20040 -27.99413 -27.54100 -27.08874 -24.10000 -22.54142 -21.18866 -20.60711 -19.56900 -18.18047 -17.21028 -17.10271 -16.22997 -15.54062 -15.50667 -15.23295 -15.13118 -14.87617 -14.51566 -14.14966 -13.72908 -13.51069 -13.27081 -13.01342 -12.80153 -12.78618 -12.58114 -12.47986 -12.06690 -11.91199 -11.89831 -11.60138 -11.43657 -11.28713 -11.12821 -10.86138 -10.33415 -10.04734 -8.47659 -6.10120 1.26340 1.31348 1.41586 1.78002 2.18547 2.68037 3.04148 3.29891 3.66618 3.70040 3.85539 4.12478 4.13891 4.34613 4.42021 4.46022 4.61141 4.74940 4.82682 4.94384 4.99895 5.07595 5.13759 5.15656 5.17194 5.26732 5.34919 5.45045 5.48756 5.49135 5.59261 5.85324 5.87566 6.43668 6.63521 6.77742 7.28283 7.81035 8.69649 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037708 B = 0.007158 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.378903 B = 3910.681603 C = 4149.783630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.139 4.139 7 C 0.145 3.855 8 O -0.536 6.536 9 C 0.423 3.577 10 O -0.624 6.624 11 N -0.577 5.577 12 C -0.336 4.336 13 H 0.054 0.946 14 C -0.012 4.012 15 N -0.929 5.929 16 Si 0.961 3.039 17 H -0.251 1.251 18 H -0.273 1.273 19 H -0.227 1.227 20 C -0.076 4.076 21 H 0.032 0.968 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.377 0.623 34 H 0.387 0.613 35 H 0.281 0.719 36 H 0.044 0.956 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 8.474 -18.286 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C -0.197 4.197 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.177 4.177 7 C 0.101 3.899 8 O -0.343 6.343 9 C 0.211 3.789 10 O -0.510 6.510 11 N -0.218 5.218 12 C -0.465 4.465 13 H 0.072 0.928 14 C -0.212 4.212 15 N -0.569 5.569 16 Si 0.780 3.220 17 H -0.175 1.175 18 H -0.198 1.198 19 H -0.150 1.150 20 C -0.114 4.114 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.226 0.774 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.142 9.206 -17.755 20.922 hybrid contribution -0.284 -1.322 0.896 1.622 sum -6.426 7.885 -16.859 19.690 Atomic orbital electron populations 1.22046 0.93293 1.03623 1.00338 1.20519 0.96955 0.95016 0.93371 1.21860 1.00827 0.94866 1.02124 1.21621 1.00321 0.95364 0.97143 1.21537 1.02198 0.95235 0.95566 1.22173 1.01541 0.99724 0.94271 1.21184 0.81626 0.96636 0.90450 1.86777 1.17307 1.33750 1.96456 1.21852 0.85766 0.82474 0.88834 1.90530 1.28651 1.68243 1.63551 1.41998 1.25128 1.28557 1.26115 1.19026 1.10548 1.12085 1.04836 0.92833 1.26182 1.02743 0.95560 0.96672 1.69803 1.41913 1.21892 1.23291 0.85422 0.76954 0.80365 0.79230 1.17542 1.19803 1.15002 1.21388 0.99837 0.91381 0.98841 0.94865 0.92464 0.89396 0.92927 0.90702 0.93497 0.89642 0.92414 0.89905 0.89747 0.91870 0.90605 0.77388 0.77639 0.90925 0.93754 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.12 71.98 0.51 -2.55 16 2 C -0.06 -1.38 0.77 -52.18 -0.04 -1.42 16 3 C -0.14 -2.90 8.45 71.98 0.61 -2.30 16 4 C -0.11 -2.09 4.73 30.60 0.14 -1.94 16 5 C -0.11 -2.10 5.59 30.60 0.17 -1.93 16 6 C -0.14 -3.76 4.90 30.59 0.15 -3.61 16 7 C 0.15 4.87 0.92 -11.54 -0.01 4.86 16 8 O -0.54 -15.21 8.66 -148.98 -1.29 -16.50 16 9 C 0.42 19.99 6.68 87.66 0.59 20.58 16 10 O -0.62 -36.10 15.67 -3.09 -0.05 -36.15 16 11 N -0.58 -27.64 5.00 -306.97 -1.54 -29.18 16 12 C -0.34 -19.93 10.16 84.04 0.85 -19.08 16 13 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 14 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 15 N -0.93 -55.96 13.96 21.66 0.30 -55.66 16 16 Si 0.96 37.93 27.74 68.60 1.90 39.83 16 17 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 19 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 20 C -0.08 -2.51 3.40 30.59 0.10 -2.41 16 21 H 0.03 0.86 8.09 -2.39 -0.02 0.84 16 22 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 23 H 0.09 1.94 3.79 -2.39 -0.01 1.93 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.08 1.49 5.94 -2.39 -0.01 1.48 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.38 8.51 7.57 -74.06 -0.56 7.95 16 34 H 0.39 15.05 4.26 -92.71 -0.39 14.66 16 35 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 2.32 7.87 -2.38 -0.02 2.30 16 Total: -1.00 -74.92 284.57 2.94 -71.98 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.06 Total: 35.69 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 3.55 Total: -10.02 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.23 Total: -84.83 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -1.34 Total: -52.65 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.83 kcal Total: -74.92 2.94 -71.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.874 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds