Wall clock time and date at job start Mon Mar 30 2020 03:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46936 * 2 1 4 4 O 1.42902 * 110.88504 * 303.88566 * 3 2 1 5 5 C 1.55161 * 111.00351 * 67.80638 * 3 2 1 6 6 C 1.54337 * 103.01890 * 153.38169 * 5 3 2 7 7 N 1.47023 * 107.26572 * 338.14284 * 6 5 3 8 8 C 1.34774 * 125.64374 * 178.85239 * 7 6 5 9 9 O 1.21289 * 119.99660 * 185.08546 * 8 7 6 10 10 C 1.50699 * 120.00448 * 5.08106 * 8 7 6 11 11 H 1.09004 * 109.46741 * 23.75414 * 10 8 7 12 12 C 1.53000 * 109.47099 * 143.75274 * 10 8 7 13 13 C 1.50701 * 109.47181 * 263.75675 * 10 8 7 14 14 H 1.07997 * 119.99859 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99500 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00478 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99456 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47325 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47139 * 120.00455 * 17 15 13 20 20 H 1.48499 * 109.47225 * 240.00055 * 17 15 13 21 21 C 1.47419 * 108.70302 * 358.58281 * 7 6 5 22 22 H 1.09001 * 109.46522 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46705 * 299.99161 * 1 2 3 24 24 H 1.08991 * 109.47285 * 60.00004 * 1 2 3 25 25 H 1.08997 * 109.46705 * 240.00839 * 2 1 3 26 26 H 1.08990 * 109.47796 * 119.99902 * 2 1 3 27 27 H 0.96699 * 114.00063 * 56.11735 * 4 3 2 28 28 H 1.08997 * 110.71812 * 271.94265 * 5 3 2 29 29 H 1.09001 * 110.71955 * 35.03519 * 5 3 2 30 30 H 1.08998 * 109.98809 * 218.66332 * 6 5 3 31 31 H 1.08997 * 109.77659 * 97.49760 * 6 5 3 32 32 H 1.09001 * 109.47325 * 306.29800 * 12 10 8 33 33 H 1.08996 * 109.47067 * 186.29077 * 12 10 8 34 34 H 1.09003 * 109.46663 * 66.29774 * 12 10 8 35 35 H 0.97002 * 119.99943 * 179.97438 * 16 15 13 36 36 H 1.09004 * 110.36239 * 143.19638 * 21 7 6 37 37 H 1.08999 * 110.36965 * 265.40782 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5079 2.1709 -1.1084 5 6 1.7095 2.1492 1.3412 6 6 2.8134 3.2222 1.4501 7 7 3.9311 2.7862 0.6003 8 6 5.0810 3.4621 0.4069 9 8 5.8989 3.0521 -0.3893 10 6 5.3504 4.7275 1.1799 11 1 4.7663 4.7223 2.1002 12 6 6.8396 4.8092 1.5214 13 6 4.9605 5.9193 0.3441 14 1 4.5582 5.7750 -0.6477 15 6 5.1173 7.1940 0.8458 16 7 5.6076 7.3697 2.0534 17 14 4.6346 8.6714 -0.1904 18 1 4.1134 8.2076 -1.5013 19 1 3.5823 9.4473 0.5137 20 1 5.8239 9.5338 -0.4072 21 6 3.5885 1.4841 0.0000 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5137 0.8899 27 1 0.5419 2.1732 -1.1503 28 1 0.7227 2.6104 1.3011 29 1 1.7719 1.4472 2.1727 30 1 3.1464 3.3106 2.4842 31 1 2.4321 4.1807 1.0980 32 1 7.1466 3.8948 2.0290 33 1 7.0163 5.6641 2.1740 34 1 7.4166 4.9269 0.6042 35 1 5.7183 8.2665 2.4061 36 1 3.9696 1.4245 -1.0196 37 1 3.9915 0.6705 0.6030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597536120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:54 Heat of formation + Delta-G solvation = -121.590558 kcal Electronic energy + Delta-G solvation = -18214.114117 eV Core-core repulsion = 15375.901634 eV Total energy + Delta-G solvation = -2838.212482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23827 -39.49490 -36.44726 -35.83259 -33.75076 -32.52085 -31.01712 -29.67607 -27.33713 -25.46460 -23.82477 -23.23226 -21.21003 -20.07676 -18.63408 -18.15358 -17.70750 -16.80575 -16.45524 -16.22114 -15.63619 -15.30385 -14.98549 -14.55000 -14.08281 -13.93529 -13.59858 -13.56661 -13.23102 -12.92410 -12.84247 -12.76451 -12.67760 -12.62904 -12.27726 -12.20402 -12.15995 -11.82385 -11.54797 -11.13988 -10.82999 -10.63739 -10.38777 -9.55542 -8.20774 -6.35115 1.37894 1.40143 1.51908 1.83322 2.19052 2.42329 3.07178 3.08895 3.48742 3.66824 3.79035 4.16397 4.26062 4.30677 4.46961 4.58284 4.65406 4.69248 4.72117 4.82797 4.89828 4.92596 4.94588 5.03550 5.13680 5.16659 5.29005 5.37910 5.46591 5.51184 5.67049 5.81402 6.10354 6.60343 6.67192 6.87998 7.29068 7.39513 8.85632 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030403 B = 0.006666 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.751684 B = 4199.107967 C = 4595.277332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.124 3.876 4 O -0.571 6.571 5 C -0.139 4.139 6 C 0.103 3.897 7 N -0.623 5.623 8 C 0.536 3.464 9 O -0.603 6.603 10 C 0.034 3.966 11 H 0.041 0.959 12 C -0.110 4.110 13 C -0.529 4.529 14 H 0.035 0.965 15 C 0.028 3.972 16 N -0.905 5.905 17 Si 0.961 3.039 18 H -0.279 1.279 19 H -0.266 1.266 20 H -0.275 1.275 21 C 0.105 3.895 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.390 0.610 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.049 0.951 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 -12.826 1.510 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.082 3.918 4 O -0.380 6.380 5 C -0.177 4.177 6 C -0.020 4.020 7 N -0.356 5.356 8 C 0.328 3.672 9 O -0.484 6.484 10 C 0.013 3.987 11 H 0.059 0.941 12 C -0.169 4.169 13 C -0.567 4.567 14 H 0.054 0.946 15 C -0.173 4.173 16 N -0.543 5.543 17 Si 0.785 3.215 18 H -0.204 1.204 19 H -0.191 1.191 20 H -0.201 1.201 21 C -0.017 4.017 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.241 0.759 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.504 -12.756 1.112 17.897 hybrid contribution -0.269 0.930 -0.553 1.115 sum -12.774 -11.826 0.558 17.417 Atomic orbital electron populations 1.21792 0.93413 1.03270 1.02666 1.21980 0.98113 0.93153 1.03831 1.22329 0.91006 0.92399 0.86025 1.86615 1.27188 1.75990 1.48257 1.23355 0.98496 0.97553 0.98264 1.22086 0.86615 0.98913 0.94379 1.48542 1.16971 1.21615 1.48446 1.21460 0.79333 0.84781 0.81584 1.90492 1.48329 1.70847 1.38780 1.18792 0.95601 0.88989 0.95285 0.94114 1.21451 0.96027 0.99784 0.99592 1.20853 1.44034 0.91038 1.00752 0.94618 1.25596 0.94403 1.01062 0.96208 1.69972 1.44543 1.23123 1.16691 0.85473 0.78404 0.78939 0.78654 1.20364 1.19106 1.20091 1.22375 0.94832 0.85990 0.98514 0.91035 0.91191 0.92227 0.91451 0.89069 0.75871 0.87466 0.87063 0.91091 0.93006 0.95517 0.90790 0.96075 0.92205 0.93199 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.40 71.98 0.68 -0.93 16 2 C -0.13 -2.03 5.25 30.59 0.16 -1.87 16 3 C 0.12 2.90 1.00 -9.40 -0.01 2.89 16 4 O -0.57 -15.47 13.16 -148.98 -1.96 -17.43 16 5 C -0.14 -2.89 5.39 31.79 0.17 -2.72 16 6 C 0.10 3.40 6.14 86.73 0.53 3.93 16 7 N -0.62 -25.69 3.33 -811.78 -2.70 -28.39 16 8 C 0.54 27.80 6.76 87.66 0.59 28.39 16 9 O -0.60 -34.86 16.65 -3.06 -0.05 -34.91 16 10 C 0.03 1.87 2.28 -12.29 -0.03 1.84 16 11 H 0.04 2.19 6.92 -2.38 -0.02 2.18 16 12 C -0.11 -5.92 8.45 71.98 0.61 -5.31 16 13 C -0.53 -30.96 8.54 25.60 0.22 -30.74 16 14 H 0.04 2.20 7.74 -2.91 -0.02 2.17 16 15 C 0.03 1.56 5.30 84.66 0.45 2.01 16 16 N -0.91 -51.15 11.39 21.45 0.24 -50.91 16 17 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 C 0.11 3.49 6.13 86.86 0.53 4.02 16 22 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.07 0.61 7.56 -2.39 -0.02 0.59 16 24 H 0.06 0.60 6.75 -2.39 -0.02 0.58 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.39 6.71 7.24 -74.06 -0.54 6.17 16 28 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.71 7.99 -2.39 -0.02 1.69 16 30 H 0.07 2.26 7.72 -2.39 -0.02 2.24 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 4.09 6.27 -2.39 -0.01 4.07 16 34 H 0.02 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 36 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 37 H 0.10 2.68 8.04 -2.39 -0.02 2.66 16 Total: -1.00 -74.02 299.42 1.98 -72.04 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.51 Total: 11.66 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 3.91 Total: 1.51 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.46 Total: -79.30 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -2.01 Total: -52.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.02 1.98 -72.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597536120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.552 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds