Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 O 1.42893 * 110.88990 * 300.70502 * 3 2 1 5 5 C 1.55165 * 111.00276 * 64.58374 * 3 2 1 6 6 C 1.54324 * 102.94151 * 153.61216 * 5 3 2 7 7 N 1.47027 * 107.27207 * 337.80814 * 6 5 3 8 8 C 1.34778 * 125.65122 * 178.97895 * 7 6 5 9 9 O 1.21281 * 120.00099 * 174.69441 * 8 7 6 10 10 C 1.50703 * 119.99489 * 354.69404 * 8 7 6 11 11 H 1.08996 * 109.47557 * 334.50481 * 10 8 7 12 12 C 1.52995 * 109.46816 * 214.49751 * 10 8 7 13 13 C 1.50701 * 109.46734 * 94.50145 * 10 8 7 14 14 H 1.08003 * 120.00660 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99802 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00393 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00071 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47139 * 60.00077 * 17 15 13 19 19 H 1.48500 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47332 * 300.00128 * 17 15 13 21 21 C 1.47529 * 108.71545 * 358.94136 * 7 6 5 22 22 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46776 * 299.99532 * 1 2 3 24 24 H 1.08999 * 109.47212 * 59.99419 * 1 2 3 25 25 H 1.09001 * 109.46776 * 240.00468 * 2 1 3 26 26 H 1.08999 * 109.47207 * 120.00023 * 2 1 3 27 27 H 0.96702 * 114.00255 * 59.29529 * 4 3 2 28 28 H 1.08997 * 110.72097 * 271.97535 * 5 3 2 29 29 H 1.08998 * 110.71568 * 35.07422 * 5 3 2 30 30 H 1.08997 * 109.88312 * 97.22507 * 6 5 3 31 31 H 1.09000 * 109.88083 * 218.39634 * 6 5 3 32 32 H 1.08999 * 109.46843 * 64.03421 * 12 10 8 33 33 H 1.08997 * 109.47028 * 184.03396 * 12 10 8 34 34 H 1.08998 * 109.47539 * 304.03482 * 12 10 8 35 35 H 0.96999 * 120.00668 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.37527 * 265.31200 * 21 7 6 37 37 H 1.09002 * 110.41092 * 142.95351 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5672 2.1501 -1.1478 5 6 1.6392 2.1741 1.3084 6 6 2.7339 3.2526 1.4505 7 7 3.8969 2.7992 0.6737 8 6 5.0554 3.4724 0.5284 9 8 5.9855 2.9597 -0.0571 10 6 5.1949 4.8625 1.0937 11 1 4.2112 5.3262 1.1649 12 6 6.0880 5.6991 0.1753 13 6 5.8152 4.7871 2.4650 14 1 6.0814 3.8285 2.8855 15 6 6.0430 5.9419 3.1830 16 7 5.7185 7.1092 2.6714 17 14 6.8125 5.8486 4.8826 18 1 8.1528 5.2165 4.7852 19 1 6.9499 7.2183 5.4397 20 1 5.9461 5.0367 5.7744 21 6 3.5865 1.4847 0.0802 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 0.6034 2.1926 -1.2143 28 1 0.6560 2.6335 1.2076 29 1 1.6579 1.4879 2.1550 30 1 2.3721 4.2021 1.0562 31 1 3.0095 3.3650 2.4991 32 1 5.6051 5.8135 -0.7952 33 1 6.2474 6.6814 0.6199 34 1 7.0476 5.1984 0.0469 35 1 5.8783 7.9216 3.1766 36 1 3.9551 0.6828 0.7200 37 1 4.0204 1.4057 -0.9166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597536322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = -97.575309 kcal Electronic energy + Delta-G solvation = -18183.018103 eV Core-core repulsion = 15345.847000 eV Total energy + Delta-G solvation = -2837.171103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82064 -37.90814 -35.02522 -33.72373 -32.90639 -30.46018 -29.70624 -28.41403 -25.17750 -24.02963 -22.77349 -21.48575 -20.17983 -18.36278 -16.84791 -16.39489 -16.24925 -15.43368 -14.86974 -14.75425 -14.23066 -13.86019 -13.77543 -12.99503 -12.64114 -12.54401 -12.24579 -11.96300 -11.93301 -11.65621 -11.47885 -11.28716 -11.02032 -10.95023 -10.79931 -10.61824 -10.38545 -10.20716 -10.10731 -9.83965 -9.00660 -8.59995 -8.32509 -7.90759 -6.06849 -4.14816 3.29730 3.34172 3.37184 3.75791 3.79240 4.07469 4.41333 4.50104 4.67584 4.73682 5.00655 5.19498 5.23980 5.27727 5.49163 5.60266 5.71824 5.78371 5.82292 5.90983 5.98610 6.08599 6.24079 6.25018 6.35538 6.84728 7.01103 7.07083 7.19563 7.60636 7.64840 7.79361 8.00071 8.23222 8.41479 8.84959 9.26750 9.50146 10.98951 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034122 B = 0.006276 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.393694 B = 4460.445189 C = 4755.542163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C 0.116 3.884 4 O -0.544 6.544 5 C -0.156 4.156 6 C 0.114 3.886 7 N -0.623 5.623 8 C 0.545 3.455 9 O -0.563 6.563 10 C 0.036 3.964 11 H 0.044 0.956 12 C -0.127 4.127 13 C -0.507 4.507 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.120 3.880 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.371 0.629 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.009 0.991 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 -10.350 -2.370 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.179 4.179 3 C 0.074 3.926 4 O -0.350 6.350 5 C -0.194 4.194 6 C -0.009 4.009 7 N -0.359 5.359 8 C 0.338 3.662 9 O -0.441 6.441 10 C 0.015 3.985 11 H 0.061 0.939 12 C -0.185 4.185 13 C -0.545 4.545 14 H 0.074 0.926 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.004 4.004 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.219 0.781 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.407 -10.285 -2.752 15.604 hybrid contribution -0.308 -0.114 1.089 1.138 sum -11.716 -10.399 -1.662 15.753 Atomic orbital electron populations 1.21787 0.95400 1.02171 1.01939 1.22024 0.96505 0.96123 1.03282 1.22355 0.94516 0.90324 0.85368 1.86626 1.26179 1.77432 1.44723 1.23350 0.99251 0.98706 0.98116 1.21821 0.85133 0.96984 0.96987 1.48591 1.15455 1.19710 1.52119 1.21749 0.78908 0.88808 0.76778 1.90529 1.38371 1.70801 1.44425 1.18848 0.98144 0.85932 0.95529 0.93850 1.21646 0.98557 1.02933 0.95369 1.20723 1.41674 0.93251 0.98883 0.92556 1.24906 0.95266 0.95163 0.98274 1.69873 1.47360 0.97583 1.37623 0.86538 0.79999 0.77080 0.83718 1.20092 1.21115 1.20211 1.22021 0.91401 0.87359 0.99596 0.92299 0.92239 0.92580 0.90934 0.90604 0.78113 0.90091 0.89983 0.91455 0.90686 0.97194 0.89156 0.94246 0.92662 0.90978 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.44 37.16 0.35 -0.77 16 2 C -0.14 -1.32 5.24 -26.73 -0.14 -1.46 16 3 C 0.12 1.45 0.98 -88.47 -0.09 1.37 16 4 O -0.54 -7.21 13.14 -35.23 -0.46 -7.67 16 5 C -0.16 -1.87 5.24 -24.89 -0.13 -2.00 16 6 C 0.11 1.94 6.21 -3.06 -0.02 1.92 16 7 N -0.62 -12.73 3.33 -170.43 -0.57 -13.30 16 8 C 0.54 13.67 6.78 -10.98 -0.07 13.60 16 9 O -0.56 -15.61 16.48 5.56 0.09 -15.52 16 10 C 0.04 0.97 2.26 -92.92 -0.21 0.76 16 11 H 0.04 1.16 6.92 -51.93 -0.36 0.80 16 12 C -0.13 -3.36 8.75 37.16 0.33 -3.03 16 13 C -0.51 -14.19 8.55 -34.44 -0.29 -14.49 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 16 N -0.89 -24.89 11.30 55.43 0.63 -24.27 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 C 0.12 2.01 6.10 -2.47 -0.02 1.99 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.40 7.43 -51.93 -0.39 0.02 16 24 H 0.06 0.36 6.86 -51.93 -0.36 0.01 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.37 3.29 7.47 45.56 0.34 3.63 16 28 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 30 H 0.07 1.18 7.62 -51.93 -0.40 0.78 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 2.49 5.97 -51.93 -0.31 2.18 16 34 H 0.04 1.06 7.71 -51.93 -0.40 0.66 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -32.69 298.99 -6.42 -39.10 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.20 Total: 1.35 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.39 Total: -0.40 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.06 Total: -37.57 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.37 Total: -23.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.69 -6.42 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597536322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.472 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds