Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 O 1.42893 * 110.88990 * 300.70502 * 3 2 1 5 5 C 1.55165 * 111.00276 * 64.58374 * 3 2 1 6 6 C 1.54324 * 102.94151 * 153.61216 * 5 3 2 7 7 N 1.47027 * 107.27207 * 337.80814 * 6 5 3 8 8 C 1.34778 * 125.65122 * 178.97895 * 7 6 5 9 9 O 1.21281 * 120.00099 * 174.69441 * 8 7 6 10 10 C 1.50703 * 119.99489 * 354.69404 * 8 7 6 11 11 H 1.08996 * 109.47557 * 334.50481 * 10 8 7 12 12 C 1.52995 * 109.46816 * 214.49751 * 10 8 7 13 13 C 1.50701 * 109.46734 * 94.50145 * 10 8 7 14 14 H 1.08003 * 120.00660 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99802 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00393 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00071 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47139 * 60.00077 * 17 15 13 19 19 H 1.48500 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47332 * 300.00128 * 17 15 13 21 21 C 1.47529 * 108.71545 * 358.94136 * 7 6 5 22 22 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46776 * 299.99532 * 1 2 3 24 24 H 1.08999 * 109.47212 * 59.99419 * 1 2 3 25 25 H 1.09001 * 109.46776 * 240.00468 * 2 1 3 26 26 H 1.08999 * 109.47207 * 120.00023 * 2 1 3 27 27 H 0.96702 * 114.00255 * 59.29529 * 4 3 2 28 28 H 1.08997 * 110.72097 * 271.97535 * 5 3 2 29 29 H 1.08998 * 110.71568 * 35.07422 * 5 3 2 30 30 H 1.08997 * 109.88312 * 97.22507 * 6 5 3 31 31 H 1.09000 * 109.88083 * 218.39634 * 6 5 3 32 32 H 1.08999 * 109.46843 * 64.03421 * 12 10 8 33 33 H 1.08997 * 109.47028 * 184.03396 * 12 10 8 34 34 H 1.08998 * 109.47539 * 304.03482 * 12 10 8 35 35 H 0.96999 * 120.00668 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.37527 * 265.31200 * 21 7 6 37 37 H 1.09002 * 110.41092 * 142.95351 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5672 2.1501 -1.1478 5 6 1.6392 2.1741 1.3084 6 6 2.7339 3.2526 1.4505 7 7 3.8969 2.7992 0.6737 8 6 5.0554 3.4724 0.5284 9 8 5.9855 2.9597 -0.0571 10 6 5.1949 4.8625 1.0937 11 1 4.2112 5.3262 1.1649 12 6 6.0880 5.6991 0.1753 13 6 5.8152 4.7871 2.4650 14 1 6.0814 3.8285 2.8855 15 6 6.0430 5.9419 3.1830 16 7 5.7185 7.1092 2.6714 17 14 6.8125 5.8486 4.8826 18 1 8.1528 5.2165 4.7852 19 1 6.9499 7.2183 5.4397 20 1 5.9461 5.0367 5.7744 21 6 3.5865 1.4847 0.0802 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 0.6034 2.1926 -1.2143 28 1 0.6560 2.6335 1.2076 29 1 1.6579 1.4879 2.1550 30 1 2.3721 4.2021 1.0562 31 1 3.0095 3.3650 2.4991 32 1 5.6051 5.8135 -0.7952 33 1 6.2474 6.6814 0.6199 34 1 7.0476 5.1984 0.0469 35 1 5.8783 7.9216 3.1766 36 1 3.9551 0.6828 0.7200 37 1 4.0204 1.4057 -0.9166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597536322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = -121.221518 kcal Electronic energy + Delta-G solvation = -18184.043480 eV Core-core repulsion = 15345.847000 eV Total energy + Delta-G solvation = -2838.196480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24260 -39.49906 -36.41795 -35.83909 -33.77940 -32.50062 -31.00523 -29.67682 -27.33280 -25.44826 -23.86154 -23.22037 -21.20549 -20.08680 -18.52044 -18.20625 -17.71296 -16.77492 -16.63956 -16.08480 -15.63942 -15.23892 -14.93714 -14.69165 -14.06751 -13.88755 -13.65892 -13.51396 -13.26147 -12.92208 -12.83156 -12.76258 -12.69922 -12.58266 -12.24247 -12.20846 -12.13980 -11.83165 -11.54239 -11.15552 -10.83662 -10.62938 -10.38256 -9.56653 -8.18371 -6.34883 1.41108 1.44344 1.51635 1.84199 2.16874 2.43720 3.06811 3.09775 3.48496 3.65670 3.79674 4.17953 4.25622 4.28026 4.46650 4.57282 4.65462 4.67268 4.71886 4.83593 4.90823 4.92641 4.94446 5.04111 5.13900 5.16667 5.29171 5.36704 5.46990 5.50213 5.66185 5.82240 6.11462 6.59695 6.67738 6.88667 7.29334 7.39185 8.87066 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034122 B = 0.006276 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.393694 B = 4460.445189 C = 4755.542163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.128 3.872 4 O -0.567 6.567 5 C -0.140 4.140 6 C 0.104 3.896 7 N -0.622 5.622 8 C 0.537 3.463 9 O -0.602 6.602 10 C 0.035 3.965 11 H 0.036 0.964 12 C -0.118 4.118 13 C -0.529 4.529 14 H 0.044 0.956 15 C 0.026 3.974 16 N -0.907 5.907 17 Si 0.963 3.037 18 H -0.279 1.279 19 H -0.275 1.275 20 H -0.265 1.265 21 C 0.107 3.893 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.392 0.608 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.086 0.914 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 -11.459 -1.237 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.087 3.913 4 O -0.376 6.376 5 C -0.178 4.178 6 C -0.019 4.019 7 N -0.355 5.355 8 C 0.329 3.671 9 O -0.484 6.484 10 C 0.014 3.986 11 H 0.054 0.946 12 C -0.176 4.176 13 C -0.567 4.567 14 H 0.062 0.938 15 C -0.175 4.175 16 N -0.545 5.545 17 Si 0.788 3.212 18 H -0.204 1.204 19 H -0.200 1.200 20 H -0.189 1.189 21 C -0.016 4.016 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.243 0.757 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.552 -11.410 -1.615 17.789 hybrid contribution 0.301 0.251 0.687 0.791 sum -13.250 -11.159 -0.928 17.348 Atomic orbital electron populations 1.21787 0.93226 1.03207 1.02779 1.21977 0.98237 0.93325 1.03644 1.22250 0.91135 0.92522 0.85440 1.86576 1.28301 1.77774 1.44993 1.23364 0.98530 0.97341 0.98533 1.22076 0.85446 0.98753 0.95626 1.48561 1.14843 1.20709 1.51432 1.21424 0.80060 0.88814 0.76820 1.90489 1.40079 1.71542 1.46297 1.18760 0.97436 0.87135 0.95255 0.94581 1.21513 0.98057 1.02012 0.96030 1.20834 1.42886 0.93121 0.99878 0.93817 1.25657 0.95311 0.94593 1.01919 1.69961 1.47457 0.98112 1.38994 0.85535 0.78853 0.77611 0.79223 1.20417 1.19969 1.18947 1.22356 0.95193 0.85695 0.98323 0.91236 0.91294 0.91874 0.91299 0.89679 0.75694 0.86945 0.87742 0.92352 0.91836 0.95953 0.90429 0.95782 0.92227 0.89633 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.44 71.98 0.68 -0.87 16 2 C -0.13 -2.07 5.24 30.60 0.16 -1.91 16 3 C 0.13 2.91 0.98 -9.40 -0.01 2.90 16 4 O -0.57 -13.86 13.14 -148.98 -1.96 -15.81 16 5 C -0.14 -2.92 5.24 31.79 0.17 -2.75 16 6 C 0.10 3.45 6.21 86.73 0.54 3.99 16 7 N -0.62 -25.73 3.33 -811.50 -2.70 -28.43 16 8 C 0.54 27.83 6.78 87.66 0.59 28.42 16 9 O -0.60 -34.67 16.48 -3.03 -0.05 -34.72 16 10 C 0.04 1.92 2.26 -12.29 -0.03 1.90 16 11 H 0.04 1.99 6.92 -2.39 -0.02 1.97 16 12 C -0.12 -6.45 8.75 71.98 0.63 -5.82 16 13 C -0.53 -30.26 8.55 25.60 0.22 -30.04 16 14 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 15 C 0.03 1.41 5.29 84.65 0.45 1.86 16 16 N -0.91 -51.22 11.30 21.45 0.24 -50.98 16 17 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 C 0.11 3.55 6.10 86.84 0.53 4.08 16 22 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.07 0.60 7.43 -2.39 -0.02 0.58 16 24 H 0.06 0.56 6.86 -2.39 -0.02 0.55 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.39 5.71 7.47 -74.06 -0.55 5.15 16 28 H 0.11 1.71 8.12 -2.39 -0.02 1.69 16 29 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 30 H 0.06 2.03 7.62 -2.39 -0.02 2.01 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 4.40 5.97 -2.39 -0.01 4.39 16 34 H 0.02 1.32 7.71 -2.39 -0.02 1.30 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.09 2.59 8.04 -2.39 -0.02 2.57 16 37 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 Total: -1.00 -72.28 298.99 1.99 -70.29 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.50 Total: 12.57 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 3.93 Total: 1.75 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.46 Total: -79.40 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.01 Total: -50.53 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -72.28 1.99 -70.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597536322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.928 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds