Wall clock time and date at job start Mon Mar 30 2020 03:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47133 * 2 1 4 4 O 1.42906 * 110.64335 * 61.85944 * 3 2 1 5 5 C 1.55157 * 110.72381 * 298.52267 * 3 2 1 6 6 C 1.55128 * 101.48837 * 205.97111 * 5 3 2 7 7 N 1.47426 * 104.72349 * 37.29691 * 6 5 3 8 8 C 1.34765 * 125.64913 * 155.81890 * 7 6 5 9 9 O 1.21282 * 120.00281 * 179.68667 * 8 7 6 10 10 C 1.50707 * 120.00198 * 359.69099 * 8 7 6 11 11 H 1.08997 * 109.46649 * 299.99637 * 10 8 7 12 12 C 1.52994 * 109.47019 * 59.99825 * 10 8 7 13 13 C 1.50695 * 109.47014 * 180.02562 * 10 8 7 14 14 H 1.08004 * 120.00546 * 0.27454 * 13 10 8 15 15 C 1.37885 * 119.99721 * 179.97438 * 13 10 8 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47093 * 60.00328 * 17 15 13 19 19 H 1.48495 * 109.47002 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47239 * 300.00048 * 17 15 13 21 21 C 1.47029 * 108.70019 * 335.54918 * 7 6 5 22 22 H 1.08994 * 109.47152 * 59.99766 * 1 2 3 23 23 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46741 * 299.99910 * 1 2 3 25 25 H 1.08995 * 109.46815 * 239.99638 * 2 1 3 26 26 H 1.09005 * 109.46806 * 119.99914 * 2 1 3 27 27 H 0.96696 * 113.99745 * 303.13886 * 4 3 2 28 28 H 1.09006 * 111.00098 * 324.21331 * 5 3 2 29 29 H 1.09001 * 111.00217 * 88.01840 * 5 3 2 30 30 H 1.09001 * 110.49776 * 278.44978 * 6 5 3 31 31 H 1.08999 * 110.34172 * 156.06218 * 6 5 3 32 32 H 1.08998 * 109.46887 * 180.02562 * 12 10 8 33 33 H 1.09005 * 109.47504 * 300.00247 * 12 10 8 34 34 H 1.09002 * 109.47168 * 60.00598 * 12 10 8 35 35 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.87928 * 120.70538 * 21 7 6 37 37 H 1.09002 * 109.88151 * 241.71881 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6133 2.1277 1.1792 5 6 1.5697 2.1910 -1.2750 6 6 2.6714 3.2733 -1.4219 7 7 3.9172 2.5973 -1.0166 8 6 5.1614 2.9504 -1.3951 9 8 6.1185 2.3227 -0.9939 10 6 5.3637 4.1255 -2.3168 11 1 4.8442 3.9429 -3.2574 12 6 4.8038 5.3897 -1.6618 13 6 6.8357 4.3071 -2.5836 14 1 7.5528 3.6358 -2.1345 15 6 7.2667 5.3265 -3.4059 16 7 6.3931 6.1406 -3.9571 17 14 9.0914 5.5521 -3.7361 18 1 9.6349 4.3247 -4.3712 19 1 9.2907 6.7098 -4.6444 20 1 9.7992 5.8013 -2.4546 21 6 3.5778 1.4779 -0.1258 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.6546 2.1343 1.3050 28 1 1.5554 1.5238 -2.1369 29 1 0.5923 2.6483 -1.1214 30 1 2.4667 4.1180 -0.7641 31 1 2.7400 3.6060 -2.4576 32 1 4.9497 6.2395 -2.3287 33 1 3.7390 5.2581 -1.4692 34 1 5.3234 5.5722 -0.7212 35 1 6.6964 6.8580 -4.5353 36 1 3.9363 0.5418 -0.5538 37 1 4.0287 1.6341 0.8542 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597536323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:59 Heat of formation + Delta-G solvation = -92.947858 kcal Electronic energy + Delta-G solvation = -18148.967845 eV Core-core repulsion = 15311.997403 eV Total energy + Delta-G solvation = -2836.970442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93945 -37.96188 -35.09601 -33.72860 -32.94860 -30.66771 -29.69580 -28.28240 -25.11558 -24.04199 -22.96145 -21.54031 -20.20844 -18.66307 -16.85054 -16.29462 -15.96868 -15.51967 -14.92377 -14.81410 -14.29130 -14.06256 -13.48690 -12.94156 -12.76759 -12.66581 -12.49511 -12.06971 -12.00399 -11.80911 -11.38001 -11.25373 -11.17007 -10.92756 -10.72495 -10.60654 -10.45076 -10.20079 -9.91849 -9.88695 -8.92586 -8.57369 -8.27733 -8.00293 -5.99133 -4.02011 3.39353 3.41223 3.46477 3.65846 3.75082 4.08212 4.42027 4.49984 4.63801 4.64234 4.95188 5.14941 5.22968 5.34087 5.44458 5.52208 5.68739 5.75402 5.84293 5.84830 5.92172 6.05252 6.07149 6.14259 6.27130 6.69759 6.85827 6.95048 7.05578 7.53680 7.56503 7.80441 8.04686 8.19266 8.45805 9.06194 9.26626 9.63021 11.08506 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052070 B = 0.005521 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.609733 B = 5070.017504 C = 5295.101627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.143 4.143 3 C 0.119 3.881 4 O -0.547 6.547 5 C -0.159 4.159 6 C 0.111 3.889 7 N -0.630 5.630 8 C 0.535 3.465 9 O -0.545 6.545 10 C 0.036 3.964 11 H 0.051 0.949 12 C -0.138 4.138 13 C -0.501 4.501 14 H 0.073 0.927 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.120 3.880 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.372 0.628 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.020 0.980 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -8.109 5.442 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.078 3.922 4 O -0.354 6.354 5 C -0.197 4.197 6 C -0.013 4.013 7 N -0.367 5.367 8 C 0.327 3.673 9 O -0.421 6.421 10 C 0.015 3.985 11 H 0.069 0.931 12 C -0.196 4.196 13 C -0.539 4.539 14 H 0.091 0.909 15 C -0.142 4.142 16 N -0.537 5.537 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.003 4.003 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.220 0.780 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.717 -8.172 5.571 16.910 hybrid contribution 0.217 0.084 -0.254 0.345 sum -13.500 -8.088 5.317 16.611 Atomic orbital electron populations 1.21801 0.95363 1.02222 1.01904 1.22088 0.96497 0.96111 1.03411 1.22167 0.94348 0.90712 0.84974 1.86622 1.27371 1.78106 1.43263 1.23536 0.99043 0.98768 0.98339 1.22302 0.83046 0.94810 1.01113 1.48759 1.06596 1.31660 1.49688 1.21842 0.79244 0.85732 0.80448 1.90533 1.39679 1.55236 1.56670 1.18814 0.98927 0.88028 0.92717 0.93147 1.21862 0.95872 1.01546 1.00314 1.21124 0.90773 1.13868 1.28174 0.90885 1.24942 0.98042 0.95640 0.95572 1.69867 1.33455 1.18046 1.32310 0.86501 0.85072 0.77418 0.78111 1.20205 1.21376 1.20196 1.21690 0.91550 0.91449 0.95608 0.92169 0.92255 0.92661 0.90533 0.90892 0.77991 0.89852 0.89904 0.91246 0.90103 0.88929 0.96115 0.95167 0.92954 0.90898 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.46 37.16 0.35 -0.71 16 2 C -0.14 -1.31 5.12 -26.73 -0.14 -1.45 16 3 C 0.12 1.42 0.96 -88.79 -0.08 1.34 16 4 O -0.55 -6.57 13.10 -35.23 -0.46 -7.04 16 5 C -0.16 -1.79 5.20 -24.46 -0.13 -1.92 16 6 C 0.11 1.72 5.13 -2.41 -0.01 1.71 16 7 N -0.63 -12.24 3.32 -170.37 -0.57 -12.81 16 8 C 0.54 13.14 7.21 -10.99 -0.08 13.06 16 9 O -0.55 -15.18 15.79 5.56 0.09 -15.09 16 10 C 0.04 0.94 1.99 -92.93 -0.18 0.75 16 11 H 0.05 1.34 7.85 -51.93 -0.41 0.94 16 12 C -0.14 -3.32 8.78 37.15 0.33 -2.99 16 13 C -0.50 -14.66 8.37 -34.44 -0.29 -14.95 16 14 H 0.07 2.26 6.75 -52.48 -0.35 1.90 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 17 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.12 1.98 6.23 -3.06 -0.02 1.96 16 22 H 0.06 0.39 7.30 -51.93 -0.38 0.01 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.32 6.83 -51.93 -0.35 -0.03 16 25 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.37 2.85 7.45 45.56 0.34 3.19 16 28 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 29 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 31 H 0.08 1.29 7.34 -51.93 -0.38 0.91 16 32 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 33 H 0.02 0.41 4.98 -51.93 -0.26 0.15 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.07 1.17 7.79 -51.93 -0.40 0.76 16 37 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 LS Contribution 292.63 15.07 4.41 4.41 Total: -1.00 -33.16 292.63 -6.24 -39.39 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.97 Total: 0.48 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.35 Total: -1.64 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.06 Total: -37.75 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.37 Total: -22.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.16 -6.24 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597536323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.555 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds