Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 N 1.46502 * 110.45659 * 305.37622 * 3 2 1 5 5 C 1.34770 * 120.00281 * 300.38402 * 4 3 2 6 6 O 1.21282 * 120.00027 * 354.98075 * 5 4 3 7 7 C 1.50699 * 120.00249 * 174.98923 * 5 4 3 8 8 H 1.09001 * 109.46842 * 299.99656 * 7 5 4 9 9 C 1.52999 * 109.47558 * 59.99486 * 7 5 4 10 10 C 1.50694 * 109.47481 * 179.97438 * 7 5 4 11 11 H 1.08010 * 119.99570 * 359.97438 * 10 7 5 12 12 C 1.37878 * 120.00361 * 179.97438 * 10 7 5 13 13 N 1.31510 * 119.99916 * 179.97438 * 12 10 7 14 14 Si 1.86794 * 119.99730 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47484 * 89.99920 * 14 12 10 16 16 H 1.48504 * 109.47201 * 209.99935 * 14 12 10 17 17 H 1.48497 * 109.47258 * 329.99693 * 14 12 10 18 18 C 1.54510 * 110.51139 * 67.98086 * 3 2 1 19 19 C 1.54479 * 104.06073 * 118.64584 * 18 3 2 20 20 O 1.44419 * 104.80497 * 23.97928 * 19 18 3 21 21 C 1.44638 * 105.37091 * 319.56732 * 20 19 18 22 22 H 1.08997 * 109.47002 * 175.11128 * 1 2 3 23 23 H 1.08997 * 109.46804 * 55.10940 * 1 2 3 24 24 H 1.08999 * 109.46736 * 295.11214 * 1 2 3 25 25 H 1.08999 * 109.47696 * 120.00257 * 2 1 3 26 26 H 1.09000 * 109.47313 * 240.00118 * 2 1 3 27 27 H 0.97004 * 119.99549 * 120.37987 * 4 3 2 28 28 H 1.08999 * 109.46947 * 300.00318 * 9 7 5 29 29 H 1.09001 * 109.46906 * 60.00209 * 9 7 5 30 30 H 1.08992 * 109.47629 * 180.02562 * 9 7 5 31 31 H 0.97005 * 120.00086 * 179.97438 * 13 12 10 32 32 H 1.09000 * 110.51684 * 237.28971 * 18 3 2 33 33 H 1.08996 * 110.50953 * 0.02562 * 18 3 2 34 34 H 1.09000 * 110.37269 * 142.81506 * 19 18 3 35 35 H 1.09003 * 110.37385 * 265.03515 * 19 18 3 36 36 H 1.09005 * 110.33617 * 281.58932 * 21 20 19 37 37 H 1.09005 * 110.51101 * 159.18838 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4615 2.1901 -1.1192 5 6 1.6724 1.7787 -2.3851 6 8 2.4145 0.8447 -2.6036 7 6 0.9862 2.4794 -3.5293 8 1 -0.0942 2.4057 -3.4050 9 6 1.3982 3.9528 -3.5460 10 6 1.3881 1.8312 -4.8290 11 1 2.0725 0.9956 -4.8267 12 6 0.8823 2.3048 -6.0211 13 7 1.2335 1.7394 -7.1553 14 14 -0.3006 3.7504 -6.0250 15 1 0.4663 5.0174 -6.1333 16 1 -1.2247 3.6308 -7.1813 17 1 -1.0841 3.7524 -4.7635 18 6 1.7090 2.1338 1.3416 19 6 3.0913 2.4981 1.9272 20 8 3.9686 2.5741 0.7825 21 6 3.5830 1.4711 -0.0700 22 1 -0.3633 -1.0239 -0.0876 23 1 -0.3633 0.5878 -0.8429 24 1 -0.3633 0.4361 0.9305 25 1 1.8934 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 0.9266 2.9813 -0.9490 28 1 1.1078 4.4219 -2.6060 29 1 2.4786 4.0265 -3.6703 30 1 0.9016 4.4597 -4.3733 31 1 0.8774 2.0723 -7.9939 32 1 1.1170 3.0331 1.1721 33 1 1.1824 1.4477 2.0050 34 1 3.0462 3.4614 2.4353 35 1 3.4285 1.7226 2.6149 36 1 3.9974 0.5368 0.3087 37 1 3.9133 1.6462 -1.0939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597558467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = -83.798291 kcal Electronic energy + Delta-G solvation = -18533.791005 eV Core-core repulsion = 15697.217319 eV Total energy + Delta-G solvation = -2836.573687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35473 -38.18646 -35.09624 -33.81721 -32.11594 -30.89864 -30.26787 -28.23836 -25.11979 -23.55127 -23.22152 -22.50481 -19.94663 -18.92141 -16.86532 -16.72745 -16.11271 -15.52817 -15.38413 -14.82019 -14.60888 -14.09949 -13.58859 -13.21165 -12.98717 -12.69162 -12.56220 -12.31086 -12.16740 -11.77661 -11.55556 -11.35778 -11.05529 -11.00029 -10.83499 -10.59896 -10.54905 -10.26696 -9.77235 -9.62526 -9.08672 -8.62716 -8.57727 -8.46080 -6.04161 -4.04148 3.24094 3.31067 3.36802 3.55437 3.70576 4.02673 4.38641 4.41054 4.80567 4.89334 4.97945 5.20869 5.25971 5.39356 5.52868 5.54993 5.59527 5.64718 5.77979 5.89143 5.94169 6.06586 6.12097 6.16073 6.32562 6.35540 6.44133 6.47515 6.73011 6.81574 7.04937 7.18147 7.56185 8.13762 8.56371 9.09413 9.16665 9.55134 11.08809 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.006942 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.884695 B = 4032.224854 C = 4155.422381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.150 3.850 4 N -0.733 5.733 5 C 0.532 3.468 6 O -0.528 6.528 7 C -0.005 4.005 8 H 0.051 0.949 9 C -0.145 4.145 10 C -0.504 4.504 11 H 0.094 0.906 12 C 0.070 3.930 13 N -0.896 5.896 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.296 1.296 17 H -0.268 1.268 18 C -0.156 4.156 19 C 0.044 3.956 20 O -0.375 6.375 21 C 0.041 3.959 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.395 0.605 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 2.033 18.369 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.063 3.937 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.402 6.402 7 C -0.027 4.027 8 H 0.068 0.932 9 C -0.202 4.202 10 C -0.542 4.542 11 H 0.112 0.888 12 C -0.132 4.132 13 N -0.534 5.534 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.224 1.224 17 H -0.193 1.193 18 C -0.194 4.194 19 C -0.033 4.033 20 O -0.294 6.294 21 C -0.036 4.036 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.230 0.770 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.092 1.481 17.942 18.036 hybrid contribution -1.135 1.101 -0.010 1.581 sum -2.227 2.582 17.932 18.253 Atomic orbital electron populations 1.21704 0.95381 1.01652 1.01653 1.21860 0.96659 0.94948 1.03330 1.21522 0.93384 0.92541 0.86238 1.46342 1.55824 1.31160 1.05461 1.21213 0.80562 0.83393 0.82787 1.90545 1.36303 1.29102 1.84267 1.19318 0.96703 0.92754 0.93910 0.93156 1.22118 1.02070 0.97077 0.98958 1.20940 1.28743 1.17398 0.87147 0.88828 1.24980 0.96039 0.96643 0.95503 1.69883 1.44367 1.41510 0.97669 0.86919 0.81240 0.83202 0.77180 1.20563 1.22355 1.19332 1.23272 0.98626 1.01426 0.96106 1.23366 0.88522 1.01707 0.89690 1.89185 1.57462 1.50248 1.32484 1.23951 0.93264 0.89641 0.96777 0.92871 0.92038 0.93322 0.91692 0.89368 0.77048 0.94918 0.92319 0.93354 0.92599 0.90098 0.89510 0.89271 0.92391 0.91825 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.57 37.16 0.36 -1.49 16 2 C -0.13 -1.77 4.44 -26.73 -0.12 -1.89 16 3 C 0.15 2.09 0.66 -130.25 -0.09 2.00 16 4 N -0.73 -11.71 4.11 -46.16 -0.19 -11.90 16 5 C 0.53 11.20 6.21 -10.99 -0.07 11.13 16 6 O -0.53 -12.81 12.37 5.56 0.07 -12.74 16 7 C -0.01 -0.12 2.24 -92.93 -0.21 -0.33 16 8 H 0.05 1.14 7.20 -51.93 -0.37 0.76 16 9 C -0.14 -2.99 8.57 37.16 0.32 -2.67 16 10 C -0.50 -14.48 8.95 -34.44 -0.31 -14.79 16 11 H 0.09 3.06 7.00 -52.48 -0.37 2.69 16 12 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 13 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 14 Si 0.88 21.41 24.37 -169.99 -4.14 17.26 16 15 H -0.28 -6.56 6.87 56.52 0.39 -6.18 16 16 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 18 C -0.16 -1.60 6.09 -25.16 -0.15 -1.75 16 19 C 0.04 0.47 7.64 37.93 0.29 0.76 16 20 O -0.38 -5.60 11.65 -35.23 -0.41 -6.01 16 21 C 0.04 0.63 6.47 37.93 0.25 0.88 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.90 7.19 -51.93 -0.37 0.52 16 24 H 0.05 0.50 7.18 -51.93 -0.37 0.13 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.51 6.56 -51.93 -0.34 1.16 16 27 H 0.39 5.40 7.42 -40.82 -0.30 5.10 16 28 H 0.03 0.54 7.46 -51.93 -0.39 0.15 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.08 0.76 7.53 -51.93 -0.39 0.37 16 33 H 0.09 0.73 6.98 -51.93 -0.36 0.37 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.11 2.04 6.46 -51.93 -0.34 1.70 16 LS Contribution 284.39 15.07 4.29 4.29 Total: -1.00 -32.64 284.39 -4.93 -37.56 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.48 Total: 4.74 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 0.17 Total: -6.24 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.58 Total: -38.87 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.34 Total: -18.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.64 -4.93 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597558467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.234 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds