Wall clock time and date at job start Mon Mar 30 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 N 1.46502 * 110.45659 * 305.37622 * 3 2 1 5 5 C 1.34770 * 120.00281 * 300.38402 * 4 3 2 6 6 O 1.21282 * 120.00027 * 354.98075 * 5 4 3 7 7 C 1.50699 * 120.00249 * 174.98923 * 5 4 3 8 8 H 1.09001 * 109.46842 * 299.99656 * 7 5 4 9 9 C 1.52999 * 109.47558 * 59.99486 * 7 5 4 10 10 C 1.50694 * 109.47481 * 179.97438 * 7 5 4 11 11 H 1.08010 * 119.99570 * 359.97438 * 10 7 5 12 12 C 1.37878 * 120.00361 * 179.97438 * 10 7 5 13 13 N 1.31510 * 119.99916 * 179.97438 * 12 10 7 14 14 Si 1.86794 * 119.99730 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47484 * 89.99920 * 14 12 10 16 16 H 1.48504 * 109.47201 * 209.99935 * 14 12 10 17 17 H 1.48497 * 109.47258 * 329.99693 * 14 12 10 18 18 C 1.54510 * 110.51139 * 67.98086 * 3 2 1 19 19 C 1.54479 * 104.06073 * 118.64584 * 18 3 2 20 20 O 1.44419 * 104.80497 * 23.97928 * 19 18 3 21 21 C 1.44638 * 105.37091 * 319.56732 * 20 19 18 22 22 H 1.08997 * 109.47002 * 175.11128 * 1 2 3 23 23 H 1.08997 * 109.46804 * 55.10940 * 1 2 3 24 24 H 1.08999 * 109.46736 * 295.11214 * 1 2 3 25 25 H 1.08999 * 109.47696 * 120.00257 * 2 1 3 26 26 H 1.09000 * 109.47313 * 240.00118 * 2 1 3 27 27 H 0.97004 * 119.99549 * 120.37987 * 4 3 2 28 28 H 1.08999 * 109.46947 * 300.00318 * 9 7 5 29 29 H 1.09001 * 109.46906 * 60.00209 * 9 7 5 30 30 H 1.08992 * 109.47629 * 180.02562 * 9 7 5 31 31 H 0.97005 * 120.00086 * 179.97438 * 13 12 10 32 32 H 1.09000 * 110.51684 * 237.28971 * 18 3 2 33 33 H 1.08996 * 110.50953 * 0.02562 * 18 3 2 34 34 H 1.09000 * 110.37269 * 142.81506 * 19 18 3 35 35 H 1.09003 * 110.37385 * 265.03515 * 19 18 3 36 36 H 1.09005 * 110.33617 * 281.58932 * 21 20 19 37 37 H 1.09005 * 110.51101 * 159.18838 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4615 2.1901 -1.1192 5 6 1.6724 1.7787 -2.3851 6 8 2.4145 0.8447 -2.6036 7 6 0.9862 2.4794 -3.5293 8 1 -0.0942 2.4057 -3.4050 9 6 1.3982 3.9528 -3.5460 10 6 1.3881 1.8312 -4.8290 11 1 2.0725 0.9956 -4.8267 12 6 0.8823 2.3048 -6.0211 13 7 1.2335 1.7394 -7.1553 14 14 -0.3006 3.7504 -6.0250 15 1 0.4663 5.0174 -6.1333 16 1 -1.2247 3.6308 -7.1813 17 1 -1.0841 3.7524 -4.7635 18 6 1.7090 2.1338 1.3416 19 6 3.0913 2.4981 1.9272 20 8 3.9686 2.5741 0.7825 21 6 3.5830 1.4711 -0.0700 22 1 -0.3633 -1.0239 -0.0876 23 1 -0.3633 0.5878 -0.8429 24 1 -0.3633 0.4361 0.9305 25 1 1.8934 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 0.9266 2.9813 -0.9490 28 1 1.1078 4.4219 -2.6060 29 1 2.4786 4.0265 -3.6703 30 1 0.9016 4.4597 -4.3733 31 1 0.8774 2.0723 -7.9939 32 1 1.1170 3.0331 1.1721 33 1 1.1824 1.4477 2.0050 34 1 3.0462 3.4614 2.4353 35 1 3.4285 1.7226 2.6149 36 1 3.9974 0.5368 0.3087 37 1 3.9133 1.6462 -1.0939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597558467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:26 Heat of formation + Delta-G solvation = -109.395311 kcal Electronic energy + Delta-G solvation = -18534.900976 eV Core-core repulsion = 15697.217319 eV Total energy + Delta-G solvation = -2837.683657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61841 -39.61241 -36.36639 -35.74778 -33.80892 -32.60068 -31.18391 -29.38173 -27.11570 -25.12535 -24.23022 -23.73106 -21.30823 -20.37318 -18.77889 -18.18825 -17.17227 -17.03260 -16.76339 -16.37550 -15.96809 -15.45975 -15.09481 -14.78638 -14.24477 -14.20372 -14.05371 -13.61974 -13.46631 -13.18427 -12.80944 -12.75299 -12.52240 -12.26817 -12.11861 -12.05882 -11.95334 -11.57168 -11.45221 -11.21242 -10.82082 -10.76679 -10.27868 -9.87236 -8.26856 -6.34104 1.32587 1.38616 1.49928 1.90958 2.33392 2.36073 3.03110 3.07157 3.40860 3.77428 3.94231 4.11675 4.19327 4.27101 4.40973 4.44997 4.47126 4.58087 4.60981 4.73404 4.78748 4.85722 4.87396 4.98517 5.00165 5.02168 5.09738 5.29308 5.39738 5.44488 5.53850 5.69606 5.86270 6.27705 6.70762 6.88654 7.27536 7.56222 8.90870 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.006942 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.884695 B = 4032.224854 C = 4155.422381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.144 3.856 4 N -0.711 5.711 5 C 0.531 3.469 6 O -0.572 6.572 7 C -0.010 4.010 8 H 0.067 0.933 9 C -0.139 4.139 10 C -0.518 4.518 11 H 0.030 0.970 12 C 0.005 3.995 13 N -0.953 5.953 14 Si 0.959 3.041 15 H -0.263 1.263 16 H -0.300 1.300 17 H -0.230 1.230 18 C -0.144 4.144 19 C 0.037 3.963 20 O -0.399 6.399 21 C 0.042 3.958 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.411 0.589 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 4.418 21.978 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.058 3.942 4 N -0.365 5.365 5 C 0.319 3.681 6 O -0.450 6.450 7 C -0.031 4.031 8 H 0.085 0.915 9 C -0.197 4.197 10 C -0.556 4.556 11 H 0.049 0.951 12 C -0.191 4.191 13 N -0.594 5.594 14 Si 0.784 3.216 15 H -0.189 1.189 16 H -0.227 1.227 17 H -0.153 1.153 18 C -0.181 4.181 19 C -0.039 4.039 20 O -0.318 6.318 21 C -0.036 4.036 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.061 0.939 27 H 0.248 0.752 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.341 3.892 21.627 22.227 hybrid contribution -0.328 0.247 -1.080 1.156 sum -3.669 4.139 20.547 21.278 Atomic orbital electron populations 1.21688 0.94196 1.01747 1.02394 1.21839 0.97631 0.94628 1.02569 1.21749 0.92177 0.93007 0.87281 1.46055 1.54870 1.31320 1.04303 1.20891 0.80141 0.82805 0.84223 1.90545 1.38277 1.31062 1.85162 1.19264 0.97613 0.94280 0.91975 0.91509 1.22015 1.01109 0.95011 1.01543 1.21109 1.27684 1.16262 0.90579 0.95129 1.26032 0.98274 1.00313 0.94517 1.70081 1.46542 1.44034 0.98713 0.85712 0.78579 0.78694 0.78608 1.18915 1.22745 1.15327 1.23286 0.98954 1.02341 0.93534 1.23697 0.87814 1.03810 0.88556 1.89159 1.58882 1.49879 1.33924 1.23765 0.94609 0.90294 0.94896 0.92741 0.94366 0.89842 0.88753 0.93902 0.75183 0.89757 0.93887 0.93697 0.92476 0.88374 0.86576 0.86988 0.90574 0.90983 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.57 71.98 0.69 -2.55 16 2 C -0.13 -3.32 4.44 30.59 0.14 -3.19 16 3 C 0.14 3.71 0.66 4.62 0.00 3.71 16 4 N -0.71 -21.45 4.11 -418.34 -1.72 -23.17 16 5 C 0.53 22.72 6.21 87.66 0.54 23.26 16 6 O -0.57 -29.68 12.37 -3.04 -0.04 -29.72 16 7 C -0.01 -0.44 2.24 -12.29 -0.03 -0.47 16 8 H 0.07 2.85 7.20 -2.39 -0.02 2.84 16 9 C -0.14 -5.42 8.57 71.98 0.62 -4.80 16 10 C -0.52 -31.19 8.95 25.60 0.23 -30.96 16 11 H 0.03 2.17 7.00 -2.91 -0.02 2.15 16 12 C 0.00 0.29 5.45 84.66 0.46 0.75 16 13 N -0.95 -61.88 13.96 21.45 0.30 -61.58 16 14 Si 0.96 43.60 24.37 68.60 1.67 45.27 16 15 H -0.26 -11.29 6.87 99.48 0.68 -10.60 16 16 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 17 H -0.23 -9.01 6.53 99.48 0.65 -8.36 16 18 C -0.14 -2.23 6.09 31.61 0.19 -2.04 16 19 C 0.04 0.63 7.64 72.48 0.55 1.18 16 20 O -0.40 -11.21 11.65 -148.98 -1.74 -12.94 16 21 C 0.04 1.29 6.47 72.48 0.47 1.76 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.03 7.19 -2.39 -0.02 1.02 16 24 H 0.08 1.31 7.18 -2.39 -0.02 1.29 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.51 6.56 -2.39 -0.02 1.50 16 27 H 0.41 9.63 7.42 -92.71 -0.69 8.95 16 28 H 0.08 2.39 7.46 -2.39 -0.02 2.37 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 31 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 32 H 0.10 1.25 7.53 -2.39 -0.02 1.23 16 33 H 0.12 1.20 6.98 -2.39 -0.02 1.19 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 2.02 7.87 -2.38 -0.02 2.00 16 37 H 0.06 2.55 6.46 -2.38 -0.02 2.53 16 Total: -1.00 -78.84 284.39 2.65 -76.19 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.30 Total: 19.29 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 3.87 Total: -13.34 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.42 Total: -84.75 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -1.77 Total: -42.66 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Total: -78.84 2.65 -76.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597558467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.201 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds