Wall clock time and date at job start Mon Mar 30 2020 03:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 N 1.46502 * 110.45508 * 302.83362 * 3 2 1 5 5 C 1.34776 * 119.99983 * 300.08543 * 4 3 2 6 6 O 1.21287 * 120.00171 * 354.97606 * 5 4 3 7 7 C 1.50703 * 119.99762 * 174.98179 * 5 4 3 8 8 H 1.09002 * 109.47135 * 60.00021 * 7 5 4 9 9 C 1.52994 * 109.46943 * 299.99663 * 7 5 4 10 10 C 1.50699 * 109.46750 * 180.02562 * 7 5 4 11 11 H 1.08003 * 120.00169 * 359.97438 * 10 7 5 12 12 C 1.37876 * 119.99729 * 179.97438 * 10 7 5 13 13 N 1.31516 * 120.00408 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00130 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46757 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46975 * 119.99945 * 14 12 10 17 17 H 1.48500 * 109.47174 * 240.00372 * 14 12 10 18 18 C 1.54512 * 110.50599 * 65.43749 * 3 2 1 19 19 C 1.54478 * 104.06032 * 118.64394 * 18 3 2 20 20 O 1.44425 * 104.80516 * 23.97835 * 19 18 3 21 21 C 1.44430 * 105.27187 * 319.48624 * 20 19 18 22 22 H 1.09004 * 109.46801 * 54.54513 * 1 2 3 23 23 H 1.08999 * 109.47224 * 294.54440 * 1 2 3 24 24 H 1.08999 * 109.46657 * 174.53816 * 1 2 3 25 25 H 1.08997 * 109.47442 * 120.00220 * 2 1 3 26 26 H 1.09009 * 109.46950 * 240.00557 * 2 1 3 27 27 H 0.97000 * 119.99987 * 120.09194 * 4 3 2 28 28 H 1.09005 * 109.47398 * 180.02562 * 9 7 5 29 29 H 1.09002 * 109.47497 * 300.00136 * 9 7 5 30 30 H 1.09004 * 109.47388 * 60.00159 * 9 7 5 31 31 H 0.96996 * 120.00556 * 179.97438 * 13 12 10 32 32 H 1.09007 * 110.50719 * 237.28865 * 18 3 2 33 33 H 1.08998 * 110.51036 * 0.02562 * 18 3 2 34 34 H 1.09004 * 110.37284 * 142.80433 * 19 18 3 35 35 H 1.08990 * 110.37229 * 265.03307 * 19 18 3 36 36 H 1.08997 * 110.37312 * 281.67655 * 21 20 19 37 37 H 1.09008 * 110.37090 * 159.34764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 1.5090 2.1734 -1.1534 5 6 1.7776 1.7467 -2.4033 6 8 2.5323 0.8132 -2.5764 7 6 1.1401 2.4297 -3.5858 8 1 1.4299 3.4804 -3.5982 9 6 -0.3821 2.3217 -3.4775 10 6 1.6011 1.7659 -4.8578 11 1 2.2873 0.9330 -4.8142 12 6 1.1467 2.2218 -6.0771 13 7 0.3107 3.2356 -6.1301 14 14 1.7185 1.3994 -7.6538 15 1 2.6498 0.2907 -7.3242 16 1 0.5441 0.8583 -8.3839 17 1 2.4159 2.3952 -8.5067 18 6 1.6533 2.1534 1.3163 19 6 3.0099 2.5268 1.9538 20 8 3.9345 2.5863 0.8458 21 6 3.5845 1.4705 -0.0020 22 1 -0.3633 0.5961 -0.8372 23 1 -0.3633 0.4269 0.9348 24 1 -0.3632 -1.0230 -0.0978 25 1 1.8934 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 0.9642 2.9643 -1.0174 28 1 -0.8433 2.8153 -4.3330 29 1 -0.6719 1.2710 -3.4651 30 1 -0.7159 2.8015 -2.5574 31 1 -0.0087 3.5566 -6.9879 32 1 1.0691 3.0500 1.1087 33 1 1.0992 1.4770 1.9670 34 1 2.9439 3.4975 2.4452 35 1 3.3177 1.7617 2.6663 36 1 3.9815 0.5424 0.4092 37 1 3.9599 1.6297 -1.0129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597558469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:30 Heat of formation + Delta-G solvation = -93.968703 kcal Electronic energy + Delta-G solvation = -18487.085925 eV Core-core repulsion = 15650.071216 eV Total energy + Delta-G solvation = -2837.014709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26117 -38.05303 -35.00137 -33.71083 -31.97982 -30.33277 -30.11195 -28.05601 -25.11932 -23.36006 -23.17521 -22.33890 -19.89951 -18.82887 -16.85183 -16.18886 -15.96363 -15.55234 -15.30057 -14.57458 -14.52805 -14.09771 -13.28142 -13.16104 -12.86411 -12.61270 -12.33787 -12.12759 -11.73332 -11.50475 -11.29619 -11.02917 -10.92296 -10.80934 -10.67390 -10.64627 -10.52627 -10.22072 -9.94106 -9.71615 -8.94585 -8.53650 -8.38103 -8.26502 -6.01580 -4.04463 3.33241 3.40790 3.48805 3.71024 3.86102 4.09468 4.47512 4.50062 4.87953 4.96065 5.04365 5.27304 5.32242 5.45628 5.59047 5.61871 5.65947 5.71522 5.85946 5.99757 6.10810 6.20664 6.26329 6.42851 6.50646 6.63485 6.83669 6.87704 6.94621 7.18106 7.49703 7.77106 8.01279 8.17693 8.47476 9.05053 9.26499 9.61241 11.06119 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.006488 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.490746 B = 4314.592271 C = 4464.448746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.150 3.850 4 N -0.732 5.732 5 C 0.523 3.477 6 O -0.543 6.543 7 C 0.028 3.972 8 H 0.051 0.949 9 C -0.130 4.130 10 C -0.498 4.498 11 H 0.075 0.925 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.157 4.157 19 C 0.044 3.956 20 O -0.375 6.375 21 C 0.041 3.959 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.396 0.604 28 H 0.092 0.908 29 H 0.030 0.970 30 H 0.011 0.989 31 H 0.260 0.740 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -1.645 15.149 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.063 3.937 4 N -0.386 5.386 5 C 0.314 3.686 6 O -0.420 6.420 7 C 0.007 3.993 8 H 0.068 0.932 9 C -0.188 4.188 10 C -0.537 4.537 11 H 0.093 0.907 12 C -0.143 4.143 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.195 4.195 19 C -0.033 4.033 20 O -0.294 6.294 21 C -0.036 4.036 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.230 0.770 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.159 -2.082 14.833 14.979 hybrid contribution -0.269 -0.113 -0.710 0.768 sum -0.110 -2.195 14.122 14.292 Atomic orbital electron populations 1.21727 0.95400 1.01586 1.01780 1.21847 0.96615 0.95082 1.03160 1.21498 0.93531 0.92669 0.86040 1.46369 1.55675 1.31406 1.05134 1.21913 0.79799 0.83239 0.83686 1.90493 1.36186 1.29633 1.85648 1.18876 0.93235 0.97025 0.90182 0.93160 1.21729 0.97229 0.99668 1.00220 1.21187 1.26943 1.16530 0.88992 0.90703 1.24953 0.95085 0.95073 0.99204 1.69879 1.32750 1.25860 1.25203 0.86419 0.78542 0.79510 0.82915 1.19577 1.21101 1.21072 1.23278 0.98607 1.01352 0.96247 1.23367 0.88033 1.01691 0.90208 1.89158 1.55480 1.49442 1.35288 1.23904 0.93906 0.89226 0.96598 0.91779 0.93342 0.93033 0.91882 0.89467 0.76963 0.88926 0.95079 0.96987 0.93063 0.90042 0.89571 0.89277 0.92459 0.92004 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.55 37.16 0.35 -1.60 16 2 C -0.13 -1.84 4.51 -26.73 -0.12 -1.96 16 3 C 0.15 2.20 0.66 -130.25 -0.09 2.12 16 4 N -0.73 -12.51 4.10 -46.15 -0.19 -12.70 16 5 C 0.52 11.53 6.40 -10.98 -0.07 11.46 16 6 O -0.54 -13.38 12.34 5.55 0.07 -13.31 16 7 C 0.03 0.69 2.64 -92.93 -0.25 0.44 16 8 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.13 -2.96 8.87 37.15 0.33 -2.63 16 10 C -0.50 -14.07 8.37 -34.44 -0.29 -14.35 16 11 H 0.07 2.23 6.75 -52.48 -0.35 1.88 16 12 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 13 N -0.90 -25.27 11.32 55.43 0.63 -24.65 16 14 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.16 -1.73 6.07 -25.16 -0.15 -1.89 16 19 C 0.04 0.49 7.63 37.93 0.29 0.78 16 20 O -0.38 -5.85 11.65 -35.23 -0.41 -6.26 16 21 C 0.04 0.66 6.46 37.93 0.24 0.90 16 22 H 0.06 0.99 7.40 -51.93 -0.38 0.60 16 23 H 0.05 0.53 7.03 -51.93 -0.36 0.17 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.54 6.50 -51.92 -0.34 1.21 16 27 H 0.40 6.04 7.72 -40.82 -0.32 5.72 16 28 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.01 0.22 7.68 -51.93 -0.40 -0.18 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.08 0.85 7.53 -51.93 -0.39 0.45 16 33 H 0.09 0.79 6.81 -51.93 -0.35 0.44 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 37 H 0.11 2.08 6.45 -51.92 -0.34 1.75 16 LS Contribution 291.70 15.07 4.40 4.40 Total: -1.00 -30.60 291.70 -6.00 -36.60 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.63 Total: 4.28 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 0.16 Total: -5.23 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.44 Total: -37.34 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.34 Total: -19.57 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.60 -6.00 -36.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597558469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.367 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds