Wall clock time and date at job start Mon Mar 30 2020 03:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 N 1.46502 * 110.45508 * 302.83362 * 3 2 1 5 5 C 1.34776 * 119.99983 * 300.08543 * 4 3 2 6 6 O 1.21287 * 120.00171 * 354.97606 * 5 4 3 7 7 C 1.50703 * 119.99762 * 174.98179 * 5 4 3 8 8 H 1.09002 * 109.47135 * 60.00021 * 7 5 4 9 9 C 1.52994 * 109.46943 * 299.99663 * 7 5 4 10 10 C 1.50699 * 109.46750 * 180.02562 * 7 5 4 11 11 H 1.08003 * 120.00169 * 359.97438 * 10 7 5 12 12 C 1.37876 * 119.99729 * 179.97438 * 10 7 5 13 13 N 1.31516 * 120.00408 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00130 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46757 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46975 * 119.99945 * 14 12 10 17 17 H 1.48500 * 109.47174 * 240.00372 * 14 12 10 18 18 C 1.54512 * 110.50599 * 65.43749 * 3 2 1 19 19 C 1.54478 * 104.06032 * 118.64394 * 18 3 2 20 20 O 1.44425 * 104.80516 * 23.97835 * 19 18 3 21 21 C 1.44430 * 105.27187 * 319.48624 * 20 19 18 22 22 H 1.09004 * 109.46801 * 54.54513 * 1 2 3 23 23 H 1.08999 * 109.47224 * 294.54440 * 1 2 3 24 24 H 1.08999 * 109.46657 * 174.53816 * 1 2 3 25 25 H 1.08997 * 109.47442 * 120.00220 * 2 1 3 26 26 H 1.09009 * 109.46950 * 240.00557 * 2 1 3 27 27 H 0.97000 * 119.99987 * 120.09194 * 4 3 2 28 28 H 1.09005 * 109.47398 * 180.02562 * 9 7 5 29 29 H 1.09002 * 109.47497 * 300.00136 * 9 7 5 30 30 H 1.09004 * 109.47388 * 60.00159 * 9 7 5 31 31 H 0.96996 * 120.00556 * 179.97438 * 13 12 10 32 32 H 1.09007 * 110.50719 * 237.28865 * 18 3 2 33 33 H 1.08998 * 110.51036 * 0.02562 * 18 3 2 34 34 H 1.09004 * 110.37284 * 142.80433 * 19 18 3 35 35 H 1.08990 * 110.37229 * 265.03307 * 19 18 3 36 36 H 1.08997 * 110.37312 * 281.67655 * 21 20 19 37 37 H 1.09008 * 110.37090 * 159.34764 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 1.5090 2.1734 -1.1534 5 6 1.7776 1.7467 -2.4033 6 8 2.5323 0.8132 -2.5764 7 6 1.1401 2.4297 -3.5858 8 1 1.4299 3.4804 -3.5982 9 6 -0.3821 2.3217 -3.4775 10 6 1.6011 1.7659 -4.8578 11 1 2.2873 0.9330 -4.8142 12 6 1.1467 2.2218 -6.0771 13 7 0.3107 3.2356 -6.1301 14 14 1.7185 1.3994 -7.6538 15 1 2.6498 0.2907 -7.3242 16 1 0.5441 0.8583 -8.3839 17 1 2.4159 2.3952 -8.5067 18 6 1.6533 2.1534 1.3163 19 6 3.0099 2.5268 1.9538 20 8 3.9345 2.5863 0.8458 21 6 3.5845 1.4705 -0.0020 22 1 -0.3633 0.5961 -0.8372 23 1 -0.3633 0.4269 0.9348 24 1 -0.3632 -1.0230 -0.0978 25 1 1.8934 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 0.9642 2.9643 -1.0174 28 1 -0.8433 2.8153 -4.3330 29 1 -0.6719 1.2710 -3.4651 30 1 -0.7159 2.8015 -2.5574 31 1 -0.0087 3.5566 -6.9879 32 1 1.0691 3.0500 1.1087 33 1 1.0992 1.4770 1.9670 34 1 2.9439 3.4975 2.4452 35 1 3.3177 1.7617 2.6663 36 1 3.9815 0.5424 0.4092 37 1 3.9599 1.6297 -1.0129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597558469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:30 Heat of formation + Delta-G solvation = -115.239271 kcal Electronic energy + Delta-G solvation = -18488.008286 eV Core-core repulsion = 15650.071216 eV Total energy + Delta-G solvation = -2837.937070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57394 -39.55553 -36.33073 -35.71705 -33.53549 -32.08916 -31.15644 -29.28451 -27.19319 -24.91524 -24.24413 -23.68311 -21.32902 -20.33602 -18.39507 -18.05251 -17.13767 -17.07693 -16.58680 -16.34657 -15.94888 -15.52178 -14.84660 -14.51830 -14.32921 -14.10618 -13.63549 -13.43473 -13.25825 -12.96891 -12.82462 -12.59573 -12.54257 -12.23868 -12.19746 -12.03042 -12.01540 -11.93205 -11.55995 -11.02312 -10.81816 -10.56651 -10.14847 -9.82676 -8.15208 -6.25204 1.38121 1.40115 1.53468 1.98450 2.34779 2.52977 3.04336 3.14461 3.41977 3.78942 3.95664 4.17739 4.25396 4.31770 4.45298 4.55531 4.61940 4.74792 4.76420 4.84806 4.86567 4.96089 4.99301 4.99610 5.04693 5.09997 5.30551 5.41628 5.50861 5.70684 5.76868 5.86138 5.97080 6.23208 6.77090 6.89450 7.41126 7.60940 8.90838 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.006488 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.490746 B = 4314.592271 C = 4464.448746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.143 3.857 4 N -0.713 5.713 5 C 0.526 3.474 6 O -0.576 6.576 7 C 0.022 3.978 8 H 0.034 0.966 9 C -0.115 4.115 10 C -0.525 4.525 11 H 0.049 0.951 12 C 0.018 3.982 13 N -0.912 5.912 14 Si 0.954 3.046 15 H -0.280 1.280 16 H -0.273 1.273 17 H -0.275 1.275 18 C -0.146 4.146 19 C 0.038 3.962 20 O -0.400 6.400 21 C 0.043 3.957 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.407 0.593 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -1.537 17.328 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.056 3.944 4 N -0.367 5.367 5 C 0.316 3.684 6 O -0.455 6.455 7 C 0.001 3.999 8 H 0.052 0.948 9 C -0.173 4.173 10 C -0.563 4.563 11 H 0.067 0.933 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.780 3.220 15 H -0.205 1.205 16 H -0.199 1.199 17 H -0.201 1.201 18 C -0.183 4.183 19 C -0.038 4.038 20 O -0.320 6.320 21 C -0.035 4.035 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.064 0.936 27 H 0.243 0.757 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.811 -1.943 17.051 17.180 hybrid contribution 0.056 -0.118 -1.318 1.324 sum -0.755 -2.060 15.733 15.885 Atomic orbital electron populations 1.21704 0.94297 1.01748 1.02363 1.21821 0.97506 0.94482 1.02635 1.21763 0.92677 0.93298 0.86622 1.46116 1.54728 1.31414 1.04423 1.21352 0.79518 0.82773 0.84798 1.90481 1.37574 1.31094 1.86379 1.18809 0.94721 0.95847 0.90565 0.94828 1.21510 0.95523 0.99198 1.01058 1.21328 1.27255 1.16504 0.91252 0.93288 1.25599 0.95132 0.95623 1.01729 1.69958 1.32917 1.26292 1.26043 0.85564 0.78284 0.78505 0.79659 1.20461 1.19877 1.20096 1.23294 0.99035 1.02011 0.93983 1.23691 0.87054 1.03816 0.89247 1.89131 1.56976 1.49207 1.36648 1.23740 0.94879 0.90030 0.94867 0.94330 0.90075 0.92608 0.88797 0.93624 0.75676 0.91368 0.95844 0.93099 0.92675 0.88907 0.86523 0.87173 0.90285 0.90666 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.55 71.98 0.69 -2.75 16 2 C -0.13 -3.39 4.51 30.60 0.14 -3.25 16 3 C 0.14 3.95 0.66 4.62 0.00 3.95 16 4 N -0.71 -23.93 4.10 -418.32 -1.71 -25.64 16 5 C 0.53 23.81 6.40 87.66 0.56 24.37 16 6 O -0.58 -29.73 12.34 -3.05 -0.04 -29.77 16 7 C 0.02 1.10 2.64 -12.29 -0.03 1.07 16 8 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 9 C -0.11 -5.23 8.87 71.98 0.64 -4.59 16 10 C -0.52 -30.71 8.37 25.60 0.21 -30.50 16 11 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 12 C 0.02 1.02 5.30 84.65 0.45 1.47 16 13 N -0.91 -51.88 11.32 21.45 0.24 -51.64 16 14 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 C -0.15 -2.61 6.07 31.61 0.19 -2.41 16 19 C 0.04 0.71 7.63 72.48 0.55 1.26 16 20 O -0.40 -11.89 11.65 -148.98 -1.74 -13.62 16 21 C 0.04 1.35 6.46 72.48 0.47 1.82 16 22 H 0.04 1.11 7.40 -2.38 -0.02 1.09 16 23 H 0.08 1.40 7.03 -2.39 -0.02 1.38 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.63 6.50 -2.38 -0.02 1.61 16 27 H 0.41 11.71 7.72 -92.71 -0.72 11.00 16 28 H 0.07 3.46 6.07 -2.38 -0.01 3.45 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.86 7.68 -2.38 -0.02 1.84 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.09 1.50 7.53 -2.38 -0.02 1.48 16 33 H 0.12 1.45 6.81 -2.39 -0.02 1.43 16 34 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 2.13 7.87 -2.39 -0.02 2.11 16 37 H 0.06 2.61 6.45 -2.38 -0.02 2.59 16 Total: -1.00 -69.19 291.70 3.00 -66.19 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.35 Total: 16.49 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.87 Total: -9.58 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.47 Total: -77.28 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.77 Total: -43.39 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -69.19 3.00 -66.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597558469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.053 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds