Wall clock time and date at job start Mon Mar 30 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 110.34028 * 2 1 4 4 C 1.54450 * 110.37868 * 237.60317 * 2 1 3 5 5 O 1.44687 * 103.56831 * 263.79969 * 4 2 1 6 6 C 1.44603 * 103.84856 * 321.80014 * 5 4 2 7 7 N 1.47597 * 105.58866 * 40.01995 * 6 5 4 8 8 C 1.34784 * 127.01643 * 155.25684 * 7 6 5 9 9 O 1.21283 * 119.99649 * 179.68209 * 8 7 6 10 10 C 1.50697 * 119.99774 * 359.41106 * 8 7 6 11 11 C 1.53003 * 109.46624 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46813 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47183 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99731 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00455 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99573 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00211 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47390 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47183 * 120.00029 * 17 15 13 20 20 H 1.48500 * 109.47478 * 240.00012 * 17 15 13 21 21 H 1.08998 * 109.46686 * 297.72603 * 1 2 3 22 22 H 1.08999 * 109.47135 * 57.72494 * 1 2 3 23 23 H 1.08999 * 109.46895 * 177.72730 * 1 2 3 24 24 H 1.09000 * 109.47197 * 182.27914 * 3 2 1 25 25 H 1.09011 * 109.46854 * 302.27643 * 3 2 1 26 26 H 1.08997 * 109.47522 * 62.27096 * 3 2 1 27 27 H 1.08996 * 110.60490 * 22.32769 * 4 2 1 28 28 H 1.09000 * 110.59678 * 145.12713 * 4 2 1 29 29 H 1.08999 * 110.34580 * 280.95503 * 6 5 4 30 30 H 1.09002 * 110.17567 * 158.99340 * 6 5 4 31 31 H 1.09001 * 109.46809 * 299.99238 * 10 8 7 32 32 H 1.08993 * 109.47525 * 59.99679 * 10 8 7 33 33 H 1.09001 * 109.46782 * 299.99104 * 11 10 8 34 34 H 1.08993 * 109.47555 * 59.99547 * 11 10 8 35 35 H 1.08998 * 109.47446 * 299.99771 * 12 11 10 36 36 H 1.09001 * 109.47095 * 59.99865 * 12 11 10 37 37 H 0.97001 * 120.00258 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0619 1.4346 0.0000 4 6 2.0679 -0.7757 -1.2225 5 8 2.3285 -2.0985 -0.6973 6 6 2.8527 -1.8481 0.6269 7 7 2.0444 -0.7392 1.1703 8 6 1.8252 -0.4556 2.4696 9 8 1.1396 0.4971 2.7751 10 6 2.4270 -1.3260 3.5426 11 6 2.0266 -0.7894 4.9185 12 6 2.6371 -1.6734 6.0079 13 6 2.2433 -1.1447 7.3630 14 1 1.6197 -0.2662 7.4396 15 6 2.6783 -1.7829 8.5052 16 7 3.4373 -2.8529 8.4120 17 14 2.1897 -1.1279 10.1849 18 1 1.3381 0.0772 10.0177 19 1 1.4315 -2.1709 10.9215 20 1 3.4104 -0.7696 10.9508 21 1 -0.3632 0.4781 0.9097 22 1 -0.3633 0.5487 -0.8689 23 1 -0.3633 -1.0269 -0.0408 24 1 3.1510 1.4183 -0.0409 25 1 1.6736 1.9660 -0.8690 26 1 1.7399 1.9415 0.9096 27 1 1.3168 -0.8172 -2.0112 28 1 2.9862 -0.3195 -1.5924 29 1 3.9016 -1.5568 0.5704 30 1 2.7408 -2.7357 1.2496 31 1 2.0608 -2.3465 3.4305 32 1 3.5130 -1.3175 3.4508 33 1 2.3925 0.2312 5.0309 34 1 0.9406 -0.7983 5.0100 35 1 2.2710 -2.6939 5.8953 36 1 3.7232 -1.6649 5.9165 37 1 3.7437 -3.3017 9.2154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597619458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:52 Heat of formation + Delta-G solvation = -112.576761 kcal Electronic energy + Delta-G solvation = -17628.815024 eV Core-core repulsion = 14790.993409 eV Total energy + Delta-G solvation = -2837.821615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77232 -39.56509 -36.24142 -35.61822 -34.29675 -33.45585 -29.69137 -28.38332 -27.36951 -26.55595 -25.61011 -22.91182 -21.45003 -19.96754 -18.56878 -17.93445 -17.73482 -16.85273 -16.49997 -16.31469 -16.02022 -15.43484 -15.14051 -14.73211 -14.46888 -14.28665 -14.09147 -13.73544 -13.46317 -13.14088 -12.98320 -12.78367 -12.65206 -12.52560 -12.39436 -12.35919 -11.94424 -11.58428 -11.47064 -11.25632 -11.06191 -10.74619 -10.55079 -9.86333 -8.20772 -6.30622 1.39251 1.39704 1.53339 1.54580 1.76330 2.41436 2.82707 3.12457 3.49762 3.56517 3.80561 3.92983 4.06379 4.14411 4.22139 4.36843 4.50043 4.55163 4.59400 4.66553 4.72914 4.80520 4.84259 4.92750 5.03814 5.07991 5.17340 5.19995 5.28821 5.52949 5.66112 5.73887 5.85543 6.25791 6.36341 6.84722 7.08586 7.38171 8.91026 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047889 B = 0.004389 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.541851 B = 6377.356133 C = 6736.649362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.115 3.885 3 C -0.149 4.149 4 C 0.051 3.949 5 O -0.379 6.379 6 C 0.256 3.744 7 N -0.640 5.640 8 C 0.541 3.459 9 O -0.567 6.567 10 C -0.127 4.127 11 C -0.080 4.080 12 C 0.026 3.974 13 C -0.547 4.547 14 H 0.051 0.949 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.275 1.275 21 H 0.041 0.959 22 H 0.093 0.907 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.001 0.999 36 H 0.003 0.997 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 3.499 -21.889 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.030 3.970 3 C -0.207 4.207 4 C -0.026 4.026 5 O -0.295 6.295 6 C 0.096 3.904 7 N -0.381 5.381 8 C 0.332 3.668 9 O -0.445 6.445 10 C -0.167 4.167 11 C -0.119 4.119 12 C -0.011 4.011 13 C -0.585 4.585 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.200 1.200 21 H 0.060 0.940 22 H 0.112 0.888 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.144 0.856 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.019 0.981 36 H 0.021 0.979 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.938 3.658 -21.670 21.996 hybrid contribution -0.185 0.292 1.328 1.372 sum -1.123 3.950 -20.341 20.752 Atomic orbital electron populations 1.22041 0.93582 1.02216 1.02949 1.22072 0.95493 0.93776 0.85609 1.22025 1.01476 0.94115 1.03057 1.24058 1.02605 0.81234 0.94686 1.89415 1.84861 1.26976 1.28291 1.23690 0.93580 0.90570 0.82587 1.49580 1.52023 1.31422 1.05102 1.20616 0.79506 0.84837 0.81854 1.90654 1.40468 1.31440 1.81981 1.21717 1.02919 0.99765 0.92263 1.21154 0.99435 0.98727 0.92536 1.19021 0.95088 0.94370 0.92646 1.21706 1.31479 1.12391 0.92904 0.93099 1.25889 0.94956 0.95151 1.03389 1.70068 1.36294 1.20523 1.30041 0.85452 0.78294 0.78515 0.79122 1.19259 1.20099 1.20010 0.93984 0.88791 0.92714 0.91553 0.88752 0.93989 0.85557 0.88603 0.88674 0.86989 0.87680 0.87295 0.93895 0.94151 0.98086 0.97909 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.53 71.99 0.61 -2.59 16 2 C 0.11 2.32 0.95 3.88 0.00 2.32 16 3 C -0.15 -2.84 8.58 71.98 0.62 -2.22 16 4 C 0.05 0.71 6.85 72.47 0.50 1.21 16 5 O -0.38 -7.24 11.80 -148.98 -1.76 -8.99 16 6 C 0.26 4.80 7.60 127.56 0.97 5.77 16 7 N -0.64 -15.91 2.89 -880.06 -2.55 -18.46 16 8 C 0.54 17.73 7.53 87.65 0.66 18.39 16 9 O -0.57 -22.91 14.03 -3.04 -0.04 -22.95 16 10 C -0.13 -4.20 4.79 29.85 0.14 -4.06 16 11 C -0.08 -3.56 4.44 30.60 0.14 -3.42 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 14 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 15 C 0.00 0.24 5.46 84.66 0.46 0.70 16 16 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 17 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H 0.04 1.19 6.93 -2.39 -0.02 1.17 16 22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 25 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.04 1.11 7.06 -2.39 -0.02 1.09 16 27 H 0.13 1.24 7.86 -2.39 -0.02 1.22 16 28 H 0.10 0.95 7.84 -2.39 -0.02 0.93 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.95 7.60 -2.39 -0.02 1.93 16 31 H 0.11 3.14 7.95 -2.39 -0.02 3.12 16 32 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 34 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.32 304.27 3.47 -68.85 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.03 Total: 4.79 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.48 Total: -14.42 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.26 Total: -74.58 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.80 Total: -31.95 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.32 3.47 -68.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597619458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.726 kcal (2) G-P(sol) polarization free energy of solvation -72.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds