Wall clock time and date at job start Mon Mar 30 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47600 * 2 1 4 4 C 1.52999 * 113.00229 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46992 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 10 10 C 1.52998 * 109.47092 * 300.27576 * 8 6 5 11 11 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00214 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99609 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00201 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47136 * 90.00100 * 15 13 11 17 17 H 1.48500 * 109.46954 * 210.00202 * 15 13 11 18 18 H 1.48503 * 109.47010 * 330.00034 * 15 13 11 19 19 C 1.54036 * 113.81681 * 311.83070 * 3 2 1 20 20 O 1.44440 * 85.42890 * 91.80482 * 19 3 2 21 21 C 1.44183 * 93.37887 * 24.08785 * 20 19 3 22 22 H 1.09002 * 109.47164 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.47034 * 59.99826 * 1 2 3 24 24 H 1.08994 * 109.47749 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46739 * 240.00268 * 2 1 3 26 26 H 1.09002 * 109.46613 * 120.00506 * 2 1 3 27 27 H 1.08995 * 109.46838 * 60.00093 * 4 3 2 28 28 H 1.09001 * 109.46617 * 300.00428 * 4 3 2 29 29 H 0.97000 * 120.00580 * 0.02562 * 5 4 3 30 30 H 1.09005 * 109.47323 * 180.02562 * 10 8 6 31 31 H 1.09006 * 109.47458 * 299.99989 * 10 8 6 32 32 H 1.09004 * 109.47239 * 60.00118 * 10 8 6 33 33 H 0.97006 * 119.99301 * 180.02562 * 14 13 11 34 34 H 1.09002 * 113.86081 * 205.91682 * 19 3 2 35 35 H 1.09002 * 113.86152 * 337.61083 * 19 3 2 36 36 H 1.09000 * 113.85955 * 221.76792 * 21 20 19 37 37 H 1.08997 * 113.86272 * 90.06099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5672 1.5365 0.0006 5 7 3.9696 2.9452 0.0012 6 6 5.2771 3.2724 0.0023 7 8 6.1204 2.4008 0.0024 8 6 5.6911 4.7214 -0.0033 9 1 5.2993 5.2148 0.8861 10 6 5.1344 5.4060 -1.2532 11 6 7.1952 4.8141 -0.0077 12 1 7.7917 3.9137 -0.0061 13 6 7.8099 6.0482 -0.0137 14 7 7.0835 7.1446 -0.0152 15 14 9.6744 6.1631 -0.0185 16 1 10.1652 6.1883 -1.4197 17 1 10.0954 7.4063 0.6760 18 1 10.2446 4.9859 0.6847 19 6 1.3614 2.3422 -1.0500 20 8 0.4266 2.6675 0.0019 21 6 1.3615 2.3421 1.0501 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8932 -0.5139 0.8900 27 1 3.9618 1.0459 -0.8891 28 1 3.9610 1.0461 0.8908 29 1 3.2952 3.6423 0.0015 30 1 5.4342 6.4540 -1.2576 31 1 5.5263 4.9127 -2.1428 32 1 4.0464 5.3390 -1.2502 33 1 7.5160 8.0129 -0.0198 34 1 1.9744 3.1843 -1.3714 35 1 0.9187 1.7933 -1.8811 36 1 0.9186 1.7931 1.8812 37 1 1.9743 3.1843 1.3715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597734694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:51 Heat of formation + Delta-G solvation = -60.995319 kcal Electronic energy + Delta-G solvation = -17932.479744 eV Core-core repulsion = 15096.894869 eV Total energy + Delta-G solvation = -2835.584876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.20167 -38.57800 -34.53746 -33.72455 -33.23065 -30.63727 -28.92949 -26.72178 -25.34745 -25.10867 -23.63350 -22.00511 -19.47676 -18.65729 -16.82004 -16.40999 -16.21290 -16.06616 -15.08296 -14.76970 -14.66116 -14.34757 -13.99992 -13.18364 -13.03287 -12.82010 -12.39546 -12.28936 -12.11582 -11.63709 -11.50688 -11.39730 -11.02442 -10.73074 -10.68295 -10.48489 -10.42594 -10.25714 -9.95068 -9.59485 -8.97537 -8.62938 -8.47587 -8.32468 -6.02769 -4.05930 3.34178 3.39847 3.46522 3.57932 3.71587 3.87191 3.98936 4.47575 4.59717 4.76012 5.00680 5.12991 5.27711 5.30524 5.37670 5.38706 5.46933 5.67158 5.79477 5.81807 5.91626 5.97162 6.06603 6.07210 6.17600 6.28659 6.60833 6.81553 6.91771 7.04443 7.46957 7.75182 7.98415 8.13416 8.42651 9.03130 9.22446 9.59707 11.04842 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051448 B = 0.005140 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.106131 B = 5445.984970 C = 5766.403081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.127 3.873 5 N -0.750 5.750 6 C 0.519 3.481 7 O -0.545 6.545 8 C 0.028 3.972 9 H 0.052 0.948 10 C -0.132 4.132 11 C -0.500 4.500 12 H 0.074 0.926 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.040 3.960 20 O -0.376 6.376 21 C 0.040 3.960 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.394 0.606 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.010 0.990 33 H 0.261 0.739 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 -9.654 -0.279 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.138 4.138 4 C 0.003 3.997 5 N -0.406 5.406 6 C 0.309 3.691 7 O -0.421 6.421 8 C 0.007 3.993 9 H 0.070 0.930 10 C -0.190 4.190 11 C -0.539 4.539 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.728 3.272 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.037 4.037 20 O -0.295 6.295 21 C -0.037 4.037 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.011 -10.006 -0.272 16.416 hybrid contribution 0.812 0.410 -0.023 0.910 sum -12.200 -9.595 -0.295 15.524 Atomic orbital electron populations 1.21793 0.94852 1.00915 1.02941 1.21206 0.96460 0.92913 1.02860 1.23944 0.95639 0.97576 0.96655 1.21038 0.91770 0.84620 1.02306 1.46456 1.08702 1.06711 1.78726 1.21987 0.80245 0.93966 0.72878 1.90532 1.50879 1.51832 1.48828 1.18880 0.98132 0.85445 0.96809 0.93039 1.21746 0.95069 1.04931 0.97250 1.21141 0.89742 0.93137 1.49869 0.90799 1.24955 0.98622 0.95591 0.95107 1.69877 1.35010 0.97492 1.51247 0.86448 0.85228 0.77384 0.78130 1.20681 1.21300 1.19755 1.24158 0.90017 0.97193 0.92330 1.89703 1.32681 1.90442 1.16690 1.24106 0.90053 0.97157 0.92380 0.92231 0.92240 0.93105 0.91057 0.91054 0.91583 0.91578 0.77061 0.88797 0.94982 0.97059 0.92972 0.89565 0.89048 0.89070 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.63 37.16 0.32 -0.96 16 2 C -0.10 -0.88 5.65 -26.73 -0.15 -1.03 16 3 C -0.14 -1.51 1.38 -153.43 -0.21 -1.72 16 4 C 0.13 1.80 5.32 -4.04 -0.02 1.78 16 5 N -0.75 -12.69 4.59 -60.30 -0.28 -12.97 16 6 C 0.52 11.73 7.15 -10.98 -0.08 11.65 16 7 O -0.55 -14.17 15.46 5.55 0.09 -14.08 16 8 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 9 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 10 C -0.13 -3.02 8.86 37.16 0.33 -2.69 16 11 C -0.50 -14.22 8.37 -34.44 -0.29 -14.51 16 12 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 14 N -0.90 -25.19 11.32 55.43 0.63 -24.56 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.04 0.45 7.45 37.64 0.28 0.73 16 20 O -0.38 -4.67 10.87 -35.23 -0.38 -5.05 16 21 C 0.04 0.44 7.44 37.64 0.28 0.72 16 22 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 23 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.39 5.96 5.25 -40.82 -0.21 5.75 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.09 1.02 6.69 -51.93 -0.35 0.67 16 35 H 0.09 0.89 7.33 -51.93 -0.38 0.50 16 36 H 0.09 0.88 7.33 -51.93 -0.38 0.50 16 37 H 0.09 1.00 6.68 -51.93 -0.35 0.65 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -31.04 293.31 -5.93 -36.97 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.50 Total: 2.51 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 0.12 Total: -4.06 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.35 Total: -37.53 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.30 Total: -19.14 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.04 -5.93 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597734694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.029 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds