Wall clock time and date at job start Mon Mar 30 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47600 * 2 1 4 4 C 1.52999 * 113.00229 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46992 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 10 10 C 1.52998 * 109.47092 * 300.27576 * 8 6 5 11 11 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00214 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99609 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00201 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47136 * 90.00100 * 15 13 11 17 17 H 1.48500 * 109.46954 * 210.00202 * 15 13 11 18 18 H 1.48503 * 109.47010 * 330.00034 * 15 13 11 19 19 C 1.54036 * 113.81681 * 311.83070 * 3 2 1 20 20 O 1.44440 * 85.42890 * 91.80482 * 19 3 2 21 21 C 1.44183 * 93.37887 * 24.08785 * 20 19 3 22 22 H 1.09002 * 109.47164 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.47034 * 59.99826 * 1 2 3 24 24 H 1.08994 * 109.47749 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46739 * 240.00268 * 2 1 3 26 26 H 1.09002 * 109.46613 * 120.00506 * 2 1 3 27 27 H 1.08995 * 109.46838 * 60.00093 * 4 3 2 28 28 H 1.09001 * 109.46617 * 300.00428 * 4 3 2 29 29 H 0.97000 * 120.00580 * 0.02562 * 5 4 3 30 30 H 1.09005 * 109.47323 * 180.02562 * 10 8 6 31 31 H 1.09006 * 109.47458 * 299.99989 * 10 8 6 32 32 H 1.09004 * 109.47239 * 60.00118 * 10 8 6 33 33 H 0.97006 * 119.99301 * 180.02562 * 14 13 11 34 34 H 1.09002 * 113.86081 * 205.91682 * 19 3 2 35 35 H 1.09002 * 113.86152 * 337.61083 * 19 3 2 36 36 H 1.09000 * 113.85955 * 221.76792 * 21 20 19 37 37 H 1.08997 * 113.86272 * 90.06099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5672 1.5365 0.0006 5 7 3.9696 2.9452 0.0012 6 6 5.2771 3.2724 0.0023 7 8 6.1204 2.4008 0.0024 8 6 5.6911 4.7214 -0.0033 9 1 5.2993 5.2148 0.8861 10 6 5.1344 5.4060 -1.2532 11 6 7.1952 4.8141 -0.0077 12 1 7.7917 3.9137 -0.0061 13 6 7.8099 6.0482 -0.0137 14 7 7.0835 7.1446 -0.0152 15 14 9.6744 6.1631 -0.0185 16 1 10.1652 6.1883 -1.4197 17 1 10.0954 7.4063 0.6760 18 1 10.2446 4.9859 0.6847 19 6 1.3614 2.3422 -1.0500 20 8 0.4266 2.6675 0.0019 21 6 1.3615 2.3421 1.0501 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8932 -0.5139 0.8900 27 1 3.9618 1.0459 -0.8891 28 1 3.9610 1.0461 0.8908 29 1 3.2952 3.6423 0.0015 30 1 5.4342 6.4540 -1.2576 31 1 5.5263 4.9127 -2.1428 32 1 4.0464 5.3390 -1.2502 33 1 7.5160 8.0129 -0.0198 34 1 1.9744 3.1843 -1.3714 35 1 0.9187 1.7933 -1.8811 36 1 0.9186 1.7931 1.8812 37 1 1.9743 3.1843 1.3715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597734694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:51 Heat of formation + Delta-G solvation = -81.893801 kcal Electronic energy + Delta-G solvation = -17933.385971 eV Core-core repulsion = 15096.894869 eV Total energy + Delta-G solvation = -2836.491102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.17749 -40.29698 -35.92625 -35.71435 -34.26212 -32.54414 -30.07831 -27.60149 -27.21569 -26.45304 -24.80297 -23.50682 -21.14375 -19.56204 -18.45983 -18.14984 -17.27019 -17.17041 -16.65817 -16.54974 -15.95071 -15.49453 -15.42510 -14.62541 -14.57480 -14.04623 -13.92180 -13.43728 -13.14762 -12.97616 -12.90070 -12.70208 -12.59894 -12.40616 -12.28479 -12.19009 -12.01596 -11.38516 -11.29575 -11.04531 -10.61435 -10.50126 -10.32119 -9.99319 -8.15134 -6.25643 1.41145 1.41808 1.53654 1.91377 2.31887 2.50446 2.73367 3.08388 3.14607 3.68235 3.83768 4.14317 4.31053 4.36164 4.40416 4.56252 4.62855 4.69686 4.69986 4.72310 4.76546 4.93199 5.00876 5.03617 5.12769 5.13247 5.21650 5.28271 5.48676 5.50699 5.57393 5.74485 5.93183 6.20524 6.68442 6.84610 7.39553 7.51937 8.90649 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051448 B = 0.005140 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.106131 B = 5445.984970 C = 5766.403081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.125 4.125 4 C 0.127 3.873 5 N -0.727 5.727 6 C 0.522 3.478 7 O -0.585 6.585 8 C 0.022 3.978 9 H 0.040 0.960 10 C -0.119 4.119 11 C -0.529 4.529 12 H 0.049 0.951 13 C 0.019 3.981 14 N -0.911 5.911 15 Si 0.956 3.044 16 H -0.274 1.274 17 H -0.275 1.275 18 H -0.278 1.278 19 C 0.037 3.963 20 O -0.388 6.388 21 C 0.037 3.963 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.405 0.595 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.503 -10.222 -0.457 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.126 4.126 4 C 0.003 3.997 5 N -0.382 5.382 6 C 0.311 3.689 7 O -0.465 6.465 8 C 0.001 3.999 9 H 0.058 0.942 10 C -0.177 4.177 11 C -0.567 4.567 12 H 0.067 0.933 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.200 1.200 18 H -0.203 1.203 19 C -0.039 4.039 20 O -0.306 6.306 21 C -0.040 4.040 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.168 -10.563 -0.452 17.678 hybrid contribution 1.089 0.581 0.049 1.235 sum -13.079 -9.983 -0.403 16.458 Atomic orbital electron populations 1.21752 0.94219 1.01686 1.02418 1.21238 0.96842 0.91409 1.03705 1.23917 0.92856 0.99049 0.96753 1.21189 0.94209 0.82295 1.01977 1.46155 1.06937 1.08661 1.76442 1.21507 0.81707 0.92636 0.73008 1.90510 1.52449 1.52376 1.51136 1.18824 0.96584 0.87382 0.97119 0.94173 1.21556 0.97379 1.02889 0.95885 1.21284 0.91739 0.92579 1.51112 0.93294 1.25603 1.02571 0.95228 0.94584 1.69956 1.36377 0.97746 1.50974 0.85588 0.80507 0.77389 0.78356 1.19971 1.20017 1.20342 1.24251 0.89885 0.97052 0.92755 1.89704 1.33135 1.90566 1.17242 1.24196 0.89930 0.97021 0.92818 0.92747 0.92735 0.91723 0.90259 0.90277 0.91926 0.91952 0.75741 0.91088 0.95689 0.93230 0.92612 0.90340 0.87284 0.87334 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.63 71.98 0.62 -1.48 16 2 C -0.09 -1.47 5.65 30.59 0.17 -1.29 16 3 C -0.13 -2.48 1.38 -51.48 -0.07 -2.55 16 4 C 0.13 3.43 5.32 86.38 0.46 3.89 16 5 N -0.73 -23.95 4.59 -463.07 -2.13 -26.08 16 6 C 0.52 23.68 7.15 87.66 0.63 24.31 16 7 O -0.59 -30.95 15.46 -3.04 -0.05 -31.00 16 8 C 0.02 1.11 2.64 -12.29 -0.03 1.08 16 9 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 10 C -0.12 -5.40 8.86 71.98 0.64 -4.76 16 11 C -0.53 -30.65 8.37 25.60 0.21 -30.44 16 12 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 13 C 0.02 1.08 5.30 84.65 0.45 1.53 16 14 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 15 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 C 0.04 0.75 7.45 72.30 0.54 1.29 16 20 O -0.39 -8.77 10.87 -148.98 -1.62 -10.39 16 21 C 0.04 0.75 7.44 72.30 0.54 1.29 16 22 H 0.05 0.86 6.53 -2.39 -0.02 0.84 16 23 H 0.05 0.86 6.53 -2.39 -0.02 0.84 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.41 11.67 5.25 -92.71 -0.49 11.18 16 30 H 0.07 3.57 6.07 -2.38 -0.01 3.56 16 31 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.05 1.81 7.56 -2.38 -0.02 1.79 16 33 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 34 H 0.08 1.70 6.69 -2.39 -0.02 1.68 16 35 H 0.11 1.82 7.33 -2.39 -0.02 1.80 16 36 H 0.11 1.82 7.33 -2.39 -0.02 1.81 16 37 H 0.08 1.68 6.68 -2.39 -0.02 1.67 16 Total: -1.00 -66.59 293.31 3.21 -63.38 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.58 Total: 15.21 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.15 Total: -7.15 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.88 Total: -77.01 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.67 Total: -41.39 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.59 3.21 -63.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597734694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.512 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds