Wall clock time and date at job start Mon Mar 30 2020 03:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 C 1.53000 * 113.00246 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47302 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00288 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00338 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.46889 * 300.00448 * 8 6 5 10 10 C 1.53000 * 109.46939 * 59.99981 * 8 6 5 11 11 C 1.50694 * 109.47166 * 179.97438 * 8 6 5 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.54035 * 113.81277 * 311.82698 * 3 2 1 20 20 O 1.44446 * 85.42616 * 91.80778 * 19 3 2 21 21 C 1.44182 * 93.38054 * 24.08891 * 20 19 3 22 22 H 1.09003 * 109.47133 * 300.00551 * 1 2 3 23 23 H 1.08998 * 109.47153 * 59.99863 * 1 2 3 24 24 H 1.08993 * 109.47494 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47426 * 239.99886 * 2 1 3 26 26 H 1.09007 * 109.47007 * 119.99857 * 2 1 3 27 27 H 1.09002 * 109.46807 * 60.00146 * 4 3 2 28 28 H 1.09000 * 109.46966 * 300.00168 * 4 3 2 29 29 H 0.97006 * 119.99461 * 0.02562 * 5 4 3 30 30 H 1.08997 * 109.47359 * 180.02562 * 10 8 6 31 31 H 1.09007 * 109.47356 * 300.00035 * 10 8 6 32 32 H 1.09000 * 109.47156 * 59.99760 * 10 8 6 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.09006 * 113.86088 * 205.90892 * 19 3 2 35 35 H 1.08991 * 113.86706 * 337.61681 * 19 3 2 36 36 H 1.09000 * 113.86224 * 221.76821 * 21 20 19 37 37 H 1.08992 * 113.86473 * 90.06454 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5672 1.5366 0.0006 5 7 3.9696 2.9452 0.0012 6 6 5.2770 3.2726 0.0013 7 8 6.1203 2.4010 0.0014 8 6 5.6910 4.7216 0.0013 9 1 5.2967 5.2121 -0.8887 10 6 5.1375 5.4101 1.2505 11 6 7.1951 4.8143 0.0021 12 1 7.7917 3.9140 0.0021 13 6 7.8097 6.0486 0.0027 14 7 7.0833 7.1449 0.0022 15 14 9.6742 6.1634 0.0044 16 1 10.1671 6.1938 1.4049 17 1 10.2434 4.9837 -0.6953 18 1 10.0942 7.4042 -0.6952 19 6 1.3614 2.3421 -1.0501 20 8 0.4265 2.6675 0.0018 21 6 1.3614 2.3422 1.0501 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.9617 1.0460 -0.8892 28 1 3.9610 1.0462 0.8908 29 1 3.2950 3.6423 0.0015 30 1 5.4365 6.4583 1.2504 31 1 4.0495 5.3431 1.2505 32 1 5.5316 4.9196 2.1405 33 1 7.5157 8.0132 0.0031 34 1 1.9742 3.1844 -1.3714 35 1 0.9187 1.7932 -1.8811 36 1 0.9186 1.7933 1.8812 37 1 1.9741 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597734695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:53 Heat of formation + Delta-G solvation = -81.903080 kcal Electronic energy + Delta-G solvation = -17932.783726 eV Core-core repulsion = 15096.292221 eV Total energy + Delta-G solvation = -2836.491504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17693 -40.29734 -35.92664 -35.71409 -34.26191 -32.54490 -30.07876 -27.60181 -27.21559 -26.45325 -24.80289 -23.50638 -21.14373 -19.56233 -18.45990 -18.15065 -17.26903 -17.17085 -16.65857 -16.54977 -15.95000 -15.49373 -15.42547 -14.62486 -14.57621 -14.04706 -13.92194 -13.43720 -13.14795 -12.97634 -12.90048 -12.70252 -12.59821 -12.40617 -12.28476 -12.19011 -12.01582 -11.38523 -11.29587 -11.04581 -10.61419 -10.50128 -10.32141 -9.99325 -8.15139 -6.25628 1.41133 1.41814 1.53656 1.91443 2.31844 2.50443 2.73346 3.08385 3.14591 3.68234 3.83750 4.14311 4.31057 4.36163 4.40411 4.56265 4.62858 4.69669 4.70012 4.72314 4.76569 4.93156 5.00897 5.03596 5.12818 5.13182 5.21649 5.28271 5.48709 5.50713 5.57410 5.74462 5.93206 6.20514 6.68448 6.84625 7.39543 7.51939 8.90658 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051426 B = 0.005140 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.337609 B = 5446.479191 C = 5766.706325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.125 4.125 4 C 0.127 3.873 5 N -0.727 5.727 6 C 0.522 3.478 7 O -0.585 6.585 8 C 0.022 3.978 9 H 0.041 0.959 10 C -0.119 4.119 11 C -0.529 4.529 12 H 0.049 0.951 13 C 0.019 3.981 14 N -0.911 5.911 15 Si 0.956 3.044 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.275 1.275 19 C 0.037 3.963 20 O -0.388 6.388 21 C 0.037 3.963 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.405 0.595 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.501 -10.221 0.456 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.126 4.126 4 C 0.003 3.997 5 N -0.382 5.382 6 C 0.311 3.689 7 O -0.465 6.465 8 C 0.001 3.999 9 H 0.058 0.942 10 C -0.177 4.177 11 C -0.567 4.567 12 H 0.067 0.933 13 C -0.180 4.180 14 N -0.550 5.550 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.203 1.203 18 H -0.200 1.200 19 C -0.040 4.040 20 O -0.306 6.306 21 C -0.039 4.039 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.166 -10.562 0.451 17.676 hybrid contribution 1.088 0.581 -0.045 1.235 sum -13.077 -9.981 0.406 16.456 Atomic orbital electron populations 1.21751 0.94219 1.01686 1.02419 1.21238 0.96842 0.91407 1.03705 1.23918 0.92854 0.99050 0.96752 1.21190 0.94209 0.82295 1.01976 1.46156 1.06939 1.08663 1.76442 1.21506 0.81705 0.92636 0.73009 1.90509 1.52453 1.52375 1.51135 1.18822 0.96586 0.87376 0.97116 0.94164 1.21555 0.97387 1.02883 0.95890 1.21284 0.91740 0.92577 1.51122 0.93293 1.25604 1.02568 0.95227 0.94581 1.69952 1.36385 0.97748 1.50964 0.85589 0.80510 0.77392 0.78353 1.19973 1.20341 1.20017 1.24247 0.89901 0.97037 0.92777 1.89704 1.33134 1.90569 1.17242 1.24199 0.89912 0.97038 0.92795 0.92742 0.92739 0.91723 0.90270 0.90267 0.91943 0.91935 0.75743 0.91091 0.93242 0.95684 0.92608 0.90410 0.87282 0.87336 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.63 71.98 0.62 -1.48 16 2 C -0.09 -1.46 5.65 30.59 0.17 -1.29 16 3 C -0.13 -2.48 1.38 -51.48 -0.07 -2.55 16 4 C 0.13 3.43 5.32 86.38 0.46 3.89 16 5 N -0.73 -23.96 4.60 -463.07 -2.13 -26.09 16 6 C 0.52 23.69 7.15 87.66 0.63 24.31 16 7 O -0.59 -30.95 15.46 -3.03 -0.05 -31.00 16 8 C 0.02 1.11 2.64 -12.29 -0.03 1.08 16 9 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 10 C -0.12 -5.40 8.86 71.98 0.64 -4.77 16 11 C -0.53 -30.66 8.37 25.60 0.21 -30.44 16 12 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 13 C 0.02 1.08 5.30 84.66 0.45 1.53 16 14 N -0.91 -51.17 11.32 21.45 0.24 -50.93 16 15 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 C 0.04 0.75 7.45 72.30 0.54 1.29 16 20 O -0.39 -8.77 10.87 -148.98 -1.62 -10.39 16 21 C 0.04 0.75 7.44 72.30 0.54 1.29 16 22 H 0.05 0.86 6.53 -2.39 -0.02 0.84 16 23 H 0.05 0.86 6.53 -2.39 -0.02 0.84 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.41 11.67 5.26 -92.70 -0.49 11.18 16 30 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 31 H 0.05 1.80 7.56 -2.38 -0.02 1.79 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.30 16 34 H 0.08 1.69 6.69 -2.38 -0.02 1.67 16 35 H 0.11 1.82 7.32 -2.39 -0.02 1.81 16 36 H 0.11 1.82 7.33 -2.39 -0.02 1.80 16 37 H 0.08 1.69 6.68 -2.39 -0.02 1.67 16 Total: -1.00 -66.59 293.33 3.21 -63.38 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.58 Total: 15.22 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.15 Total: -7.15 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.89 Total: -77.02 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.67 Total: -41.39 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.59 3.21 -63.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597734695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.522 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds