Wall clock time and date at job start Mon Mar 30 2020 04:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47186 * 2 1 4 4 C 1.52994 * 109.46948 * 185.42389 * 3 2 1 5 5 C 1.52999 * 109.46998 * 65.42677 * 3 2 1 6 6 O 1.42897 * 109.47296 * 59.99669 * 5 3 2 7 7 C 1.50694 * 109.47261 * 305.42474 * 3 2 1 8 8 O 1.21283 * 120.00335 * 115.07638 * 7 3 2 9 9 N 1.34783 * 120.00254 * 295.08145 * 7 3 2 10 10 C 1.47064 * 136.05255 * 4.77153 * 9 7 3 11 11 C 1.53757 * 87.88539 * 152.96809 * 10 9 7 12 12 C 1.50699 * 114.26562 * 139.79019 * 11 10 9 13 13 H 1.08004 * 119.99926 * 266.47684 * 12 11 10 14 14 C 1.37881 * 120.00128 * 86.48161 * 12 11 10 15 15 N 1.31515 * 119.99524 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99934 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47063 * 89.99881 * 16 14 12 18 18 H 1.48500 * 109.46748 * 209.99699 * 16 14 12 19 19 H 1.48490 * 109.47453 * 329.99448 * 16 14 12 20 20 C 1.47063 * 136.05956 * 185.15558 * 9 7 3 21 21 H 1.09003 * 109.47249 * 59.99536 * 1 2 3 22 22 H 1.09004 * 109.47006 * 299.99907 * 1 2 3 23 23 H 1.08992 * 109.47446 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47249 * 120.00464 * 2 1 3 25 25 H 1.09004 * 109.47006 * 240.00093 * 2 1 3 26 26 H 1.09000 * 109.47616 * 60.00282 * 4 3 2 27 27 H 1.09001 * 109.47453 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47679 * 299.99927 * 4 3 2 29 29 H 1.08996 * 109.47350 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47083 * 299.99956 * 5 3 2 31 31 H 0.96701 * 114.00261 * 180.02562 * 6 5 3 32 32 H 1.08996 * 113.47287 * 267.70218 * 10 9 7 33 33 H 1.08996 * 113.46827 * 38.14653 * 10 9 7 34 34 H 1.08998 * 114.39925 * 272.67697 * 11 10 9 35 35 H 0.96996 * 119.99578 * 180.02562 * 15 14 12 36 36 H 1.09003 * 113.46321 * 321.85378 * 20 9 7 37 37 H 1.08994 * 113.47121 * 92.23836 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5639 1.4446 -0.1363 5 6 1.6444 2.1233 1.3119 6 8 2.2219 1.4139 2.4097 7 6 1.4311 2.1907 -1.1577 8 8 0.6761 3.1172 -0.9513 9 7 1.7252 1.8302 -2.4227 10 6 2.4933 0.7532 -3.0653 11 6 1.5786 0.9098 -4.2912 12 6 2.2932 0.8083 -5.6141 13 1 2.6460 1.7020 -6.1073 14 6 2.4965 -0.4256 -6.1950 15 7 2.0672 -1.5139 -5.5943 16 14 3.3816 -0.5513 -7.8352 17 1 4.8406 -0.6980 -7.6003 18 1 2.8787 -1.7337 -8.5796 19 1 3.1292 0.6777 -8.6294 20 6 1.4251 2.3445 -3.7674 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.8458 0.9597 -1.0709 27 1 3.9273 2.4722 -0.1359 28 1 4.0044 0.9035 0.7011 29 1 2.0081 3.1508 1.3121 30 1 0.5588 2.1218 1.4090 31 1 2.0120 1.7903 3.2753 32 1 3.5320 1.0185 -3.2621 33 1 2.3912 -0.2103 -2.5661 34 1 0.6640 0.3183 -4.2491 35 1 2.2105 -2.3819 -6.0027 36 1 0.4129 2.7366 -3.8661 37 1 2.1817 3.0301 -4.1488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598021469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:42 Heat of formation + Delta-G solvation = -84.000767 kcal Electronic energy + Delta-G solvation = -18334.847584 eV Core-core repulsion = 15498.265117 eV Total energy + Delta-G solvation = -2836.582467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67431 -39.39428 -37.94750 -35.76271 -34.61016 -31.66709 -30.71558 -27.45555 -27.16940 -26.60282 -24.58518 -23.34275 -21.25773 -19.42319 -18.66220 -18.35863 -17.43803 -16.80373 -16.67681 -16.28174 -16.06926 -15.37223 -14.93645 -14.48970 -14.13656 -14.00263 -13.92491 -13.61552 -13.32849 -13.17242 -13.06420 -12.81525 -12.76102 -12.57293 -12.19545 -12.11094 -11.92524 -11.47917 -11.31123 -11.00682 -10.87746 -10.64867 -10.43938 -9.55085 -8.15552 -6.26604 1.48035 1.50415 1.58741 1.60121 1.94083 2.47022 3.14041 3.23078 3.47383 3.74767 3.86045 4.10889 4.23206 4.30094 4.39377 4.44635 4.52343 4.53415 4.61851 4.70269 4.71400 4.78718 4.83257 4.90302 4.98261 5.07390 5.09544 5.19709 5.21667 5.39612 5.60203 5.82238 6.24044 6.81819 6.88884 6.89482 7.13974 7.43410 8.94374 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038824 B = 0.006028 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.023615 B = 4643.909724 C = 4786.736046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.072 4.072 4 C -0.133 4.133 5 C 0.111 3.889 6 O -0.572 6.572 7 C 0.545 3.455 8 O -0.596 6.596 9 N -0.639 5.639 10 C 0.115 3.885 11 C 0.024 3.976 12 C -0.528 4.528 13 H 0.066 0.934 14 C 0.023 3.977 15 N -0.917 5.917 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.267 1.267 20 C 0.103 3.897 21 H 0.024 0.976 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.400 0.600 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 2.777 11.825 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.075 4.075 4 C -0.190 4.190 5 C 0.032 3.968 6 O -0.380 6.380 7 C 0.336 3.664 8 O -0.479 6.479 9 N -0.371 5.371 10 C -0.007 4.007 11 C 0.004 3.996 12 C -0.566 4.566 13 H 0.085 0.915 14 C -0.178 4.178 15 N -0.555 5.555 16 Si 0.783 3.217 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.192 1.192 20 C -0.019 4.019 21 H 0.043 0.957 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.250 0.750 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.025 2.757 11.653 12.145 hybrid contribution -0.036 0.215 -0.609 0.647 sum 1.989 2.972 11.044 11.608 Atomic orbital electron populations 1.21791 0.95782 1.02253 1.00840 1.21538 0.96051 0.93247 1.03460 1.20715 0.98085 0.96853 0.91814 1.21778 0.91421 1.02478 1.03318 1.21629 0.96772 0.93423 0.84960 1.86350 1.76650 1.57379 1.17623 1.20421 0.80409 0.82774 0.82803 1.90600 1.39257 1.33028 1.85014 1.49880 1.51715 1.31362 1.04128 1.23453 0.96717 0.88607 0.91928 1.20262 0.95371 0.90818 0.93120 1.21199 1.37263 0.93173 1.04955 0.91543 1.25744 0.95907 0.95492 1.00638 1.70058 1.46585 0.98472 1.40429 0.85560 0.78822 0.77636 0.79668 1.19832 1.21337 1.19168 1.23246 0.99983 0.99394 0.79258 0.95673 0.91677 0.91138 0.88624 0.92104 0.92303 0.92594 0.89426 0.93507 0.93130 0.75000 0.90155 0.91919 0.94442 0.92657 0.92778 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.35 71.98 0.67 -3.82 16 2 C -0.11 -3.13 4.80 30.60 0.15 -2.98 16 3 C -0.07 -2.21 0.42 -52.93 -0.02 -2.23 16 4 C -0.13 -3.70 8.17 71.98 0.59 -3.11 16 5 C 0.11 2.93 4.98 71.98 0.36 3.29 16 6 O -0.57 -11.94 12.22 -148.98 -1.82 -13.76 16 7 C 0.54 21.18 5.21 87.65 0.46 21.64 16 8 O -0.60 -26.36 16.76 -3.04 -0.05 -26.41 16 9 N -0.64 -25.83 3.57 -857.81 -3.07 -28.90 16 10 C 0.12 4.77 5.85 83.27 0.49 5.26 16 11 C 0.02 1.11 3.79 -11.12 -0.04 1.07 16 12 C -0.53 -26.59 8.83 25.60 0.23 -26.37 16 13 H 0.07 3.24 7.81 -2.91 -0.02 3.21 16 14 C 0.02 1.16 5.46 84.66 0.46 1.62 16 15 N -0.92 -49.89 13.26 21.45 0.28 -49.61 16 16 Si 0.96 40.52 29.54 68.60 2.03 42.54 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 18 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 C 0.10 4.34 8.17 83.18 0.68 5.02 16 21 H 0.02 0.89 7.06 -2.39 -0.02 0.87 16 22 H 0.06 1.77 6.58 -2.38 -0.02 1.75 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.10 2.52 7.52 -2.39 -0.02 2.50 16 25 H 0.06 1.98 5.66 -2.38 -0.01 1.97 16 26 H 0.06 1.73 6.00 -2.39 -0.01 1.72 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 2.16 7.68 -2.39 -0.02 2.15 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.39 6.48 -2.39 -0.02 1.37 16 31 H 0.40 4.42 9.12 -74.06 -0.68 3.74 16 32 H 0.08 3.22 7.92 -2.39 -0.02 3.20 16 33 H 0.06 2.61 5.97 -2.39 -0.01 2.59 16 34 H 0.04 1.99 8.11 -2.39 -0.02 1.97 16 35 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.09 3.36 8.10 -2.39 -0.02 3.34 16 Total: -1.00 -60.60 296.60 1.78 -58.82 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.39 Total: 17.92 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 4.01 Total: -0.62 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.78 Total: -78.51 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.87 Total: -40.17 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -60.60 1.78 -58.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.176 kcal (2) G-P(sol) polarization free energy of solvation -60.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds