Wall clock time and date at job start Mon Mar 30 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47231 * 2 1 4 4 C 1.52997 * 109.47281 * 174.83686 * 3 2 1 5 5 C 1.52999 * 109.46743 * 294.83702 * 3 2 1 6 6 O 1.42895 * 109.47291 * 299.99715 * 5 3 2 7 7 C 1.50693 * 109.46923 * 54.83286 * 3 2 1 8 8 O 1.21283 * 120.00601 * 237.02299 * 7 3 2 9 9 N 1.34777 * 120.00312 * 57.03058 * 7 3 2 10 10 C 1.47588 * 134.48677 * 355.44890 * 9 7 3 11 11 C 1.53952 * 86.11631 * 155.36010 * 10 9 7 12 12 C 1.50703 * 113.73993 * 137.95259 * 11 10 9 13 13 H 1.07995 * 120.00013 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99422 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00443 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99672 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47390 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47251 * 119.99706 * 16 14 12 19 19 H 1.48498 * 109.47166 * 239.99714 * 16 14 12 20 20 C 1.47580 * 134.50152 * 175.44802 * 9 7 3 21 21 H 1.08996 * 109.47136 * 300.00296 * 1 2 3 22 22 H 1.09001 * 109.47133 * 60.00074 * 1 2 3 23 23 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47549 * 240.00337 * 2 1 3 25 25 H 1.08997 * 109.47251 * 119.99429 * 2 1 3 26 26 H 1.08999 * 109.47011 * 294.01738 * 4 3 2 27 27 H 1.09002 * 109.47210 * 54.02070 * 4 3 2 28 28 H 1.09005 * 109.47065 * 174.02037 * 4 3 2 29 29 H 1.09000 * 109.47235 * 59.99988 * 5 3 2 30 30 H 1.09005 * 109.46835 * 179.97438 * 5 3 2 31 31 H 0.96706 * 114.00166 * 180.02562 * 6 5 3 32 32 H 1.09000 * 113.77122 * 41.05244 * 10 9 7 33 33 H 1.09008 * 113.76504 * 269.66042 * 10 9 7 34 34 H 1.09000 * 113.73600 * 269.15265 * 11 10 9 35 35 H 0.97000 * 120.00463 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.76916 * 90.33309 * 20 9 7 37 37 H 1.09004 * 113.76554 * 318.94186 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5645 1.4445 0.1298 5 6 1.6387 2.1253 -1.3091 6 8 2.2115 1.4176 -2.4105 7 6 1.4359 2.1889 1.1614 8 8 0.7969 3.2009 0.9657 9 7 1.6059 1.7319 2.4179 10 6 2.2288 0.5300 3.0059 11 6 2.4130 1.3762 4.2787 12 6 2.1010 0.6327 5.5519 13 1 1.7814 -0.3981 5.5109 14 6 2.2225 1.2689 6.7690 15 7 2.6112 2.5243 6.8190 16 14 1.8351 0.3476 8.3472 17 1 1.4217 -1.0408 8.0212 18 1 3.0429 0.3151 9.2107 19 1 0.7323 1.0364 9.0645 20 6 1.2440 2.2320 3.7584 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.8463 1.0551 1.1081 27 1 3.9963 0.8166 -0.6495 28 1 3.9369 2.4634 0.0233 29 1 0.5527 2.1239 -1.4016 30 1 2.0017 3.1531 -1.3089 31 1 1.9985 1.7958 -3.2746 32 1 3.1663 0.2432 2.5294 33 1 1.5401 -0.3058 3.1298 34 1 3.3641 1.9071 4.3188 35 1 2.6964 2.9720 7.6753 36 1 0.2660 1.8963 4.1033 37 1 1.3952 3.3043 3.8827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598021470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:44 Heat of formation + Delta-G solvation = -66.992582 kcal Electronic energy + Delta-G solvation = -18286.099874 eV Core-core repulsion = 15450.254937 eV Total energy + Delta-G solvation = -2835.844937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10990 -37.75990 -36.52804 -34.61521 -32.64256 -30.39380 -28.98633 -26.31024 -25.30784 -25.10077 -23.34735 -21.74976 -19.51682 -17.91585 -17.35252 -16.69896 -15.85657 -15.51815 -15.15293 -14.71644 -14.46777 -13.90538 -13.65324 -13.05860 -12.91184 -12.46536 -12.40401 -12.18570 -11.90332 -11.83544 -11.43073 -11.23412 -10.98796 -10.96164 -10.78028 -10.72823 -10.36097 -10.29435 -9.87058 -9.62832 -9.18919 -8.82358 -8.58941 -7.83544 -6.17244 -4.23474 3.18354 3.23028 3.32008 3.34633 3.47899 4.31666 4.38627 4.76569 4.91959 4.98696 5.13438 5.35189 5.41957 5.58095 5.65850 5.75401 5.80924 5.87802 6.00397 6.08235 6.12073 6.19864 6.22606 6.28255 6.39146 6.45790 6.51579 6.57088 6.80603 6.89166 7.54195 7.60134 7.79776 8.16296 8.52272 8.76650 8.80256 9.43555 10.92370 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044686 B = 0.005720 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.450205 B = 4894.113082 C = 5008.775280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.073 4.073 4 C -0.137 4.137 5 C 0.100 3.900 6 O -0.571 6.571 7 C 0.539 3.461 8 O -0.567 6.567 9 N -0.634 5.634 10 C 0.093 3.907 11 C 0.033 3.967 12 C -0.520 4.520 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.113 3.887 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.377 0.623 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.264 0.736 36 H 0.072 0.928 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 -4.172 -12.967 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.076 4.076 4 C -0.195 4.195 5 C 0.022 3.978 6 O -0.376 6.376 7 C 0.328 3.672 8 O -0.448 6.448 9 N -0.366 5.366 10 C -0.029 4.029 11 C 0.014 3.986 12 C -0.558 4.558 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.009 4.009 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.223 0.777 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.477 -3.790 -12.630 13.195 hybrid contribution -0.532 0.042 0.470 0.711 sum -1.009 -3.747 -12.160 12.764 Atomic orbital electron populations 1.21838 0.95819 1.01556 1.01973 1.21560 0.96042 0.93967 1.03140 1.20683 0.97655 0.96697 0.92603 1.21812 0.92322 1.02483 1.02851 1.21896 0.96913 0.94002 0.85000 1.86400 1.77026 1.57379 1.16783 1.19867 0.79707 0.84818 0.82814 1.90629 1.42677 1.26936 1.84575 1.50349 1.56919 1.24745 1.04626 1.23665 0.95894 0.89315 0.94031 1.20525 0.95023 0.92170 0.90861 1.20992 1.46571 0.98260 0.89982 0.91833 1.25031 0.94360 0.94863 0.99326 1.69964 1.45867 1.10465 1.25881 0.86497 0.78074 0.80044 0.83173 1.19585 1.20886 1.20929 1.23658 1.00946 1.00046 0.76233 0.92631 0.92764 0.92544 0.90446 0.90988 0.91457 0.91191 0.92570 0.92905 0.93063 0.77684 0.91757 0.90593 0.91732 0.92667 0.91024 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.35 37.16 0.35 -1.80 16 2 C -0.11 -1.53 4.67 -26.73 -0.12 -1.66 16 3 C -0.07 -1.14 0.40 -155.66 -0.06 -1.20 16 4 C -0.14 -2.00 8.19 37.16 0.30 -1.69 16 5 C 0.10 1.40 4.97 37.16 0.18 1.59 16 6 O -0.57 -6.67 12.34 -35.23 -0.43 -7.10 16 7 C 0.54 10.61 5.20 -10.99 -0.06 10.55 16 8 O -0.57 -12.93 16.71 5.55 0.09 -12.84 16 9 N -0.63 -12.82 3.51 -178.39 -0.63 -13.45 16 10 C 0.09 1.76 5.78 -2.97 -0.02 1.74 16 11 C 0.03 0.77 3.62 -90.84 -0.33 0.44 16 12 C -0.52 -13.11 8.77 -34.44 -0.30 -13.41 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -24.43 13.27 55.43 0.74 -23.70 16 16 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.11 2.57 8.39 -2.98 -0.02 2.54 16 21 H 0.05 0.90 7.07 -51.93 -0.37 0.53 16 22 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.01 7.53 -51.93 -0.39 0.62 16 25 H 0.07 1.01 5.93 -51.93 -0.31 0.70 16 26 H 0.07 1.00 5.50 -51.93 -0.29 0.72 16 27 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.75 6.55 -51.93 -0.34 0.41 16 30 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.38 2.64 9.12 45.56 0.42 3.05 16 32 H 0.06 1.08 5.90 -51.93 -0.31 0.77 16 33 H 0.08 1.37 8.06 -51.92 -0.42 0.95 16 34 H 0.06 1.63 8.13 -51.93 -0.42 1.21 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -29.61 296.43 -5.79 -35.40 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.83 Total: 3.37 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.18 Total: -1.23 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.11 Total: -37.15 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.34 Total: -19.94 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.61 -5.79 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.596 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds