Wall clock time and date at job start Mon Mar 30 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47231 * 2 1 4 4 C 1.52997 * 109.47281 * 174.83686 * 3 2 1 5 5 C 1.52999 * 109.46743 * 294.83702 * 3 2 1 6 6 O 1.42895 * 109.47291 * 299.99715 * 5 3 2 7 7 C 1.50693 * 109.46923 * 54.83286 * 3 2 1 8 8 O 1.21283 * 120.00601 * 237.02299 * 7 3 2 9 9 N 1.34777 * 120.00312 * 57.03058 * 7 3 2 10 10 C 1.47588 * 134.48677 * 355.44890 * 9 7 3 11 11 C 1.53952 * 86.11631 * 155.36010 * 10 9 7 12 12 C 1.50703 * 113.73993 * 137.95259 * 11 10 9 13 13 H 1.07995 * 120.00013 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99422 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00443 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99672 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47390 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47251 * 119.99706 * 16 14 12 19 19 H 1.48498 * 109.47166 * 239.99714 * 16 14 12 20 20 C 1.47580 * 134.50152 * 175.44802 * 9 7 3 21 21 H 1.08996 * 109.47136 * 300.00296 * 1 2 3 22 22 H 1.09001 * 109.47133 * 60.00074 * 1 2 3 23 23 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47549 * 240.00337 * 2 1 3 25 25 H 1.08997 * 109.47251 * 119.99429 * 2 1 3 26 26 H 1.08999 * 109.47011 * 294.01738 * 4 3 2 27 27 H 1.09002 * 109.47210 * 54.02070 * 4 3 2 28 28 H 1.09005 * 109.47065 * 174.02037 * 4 3 2 29 29 H 1.09000 * 109.47235 * 59.99988 * 5 3 2 30 30 H 1.09005 * 109.46835 * 179.97438 * 5 3 2 31 31 H 0.96706 * 114.00166 * 180.02562 * 6 5 3 32 32 H 1.09000 * 113.77122 * 41.05244 * 10 9 7 33 33 H 1.09008 * 113.76504 * 269.66042 * 10 9 7 34 34 H 1.09000 * 113.73600 * 269.15265 * 11 10 9 35 35 H 0.97000 * 120.00463 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.76916 * 90.33309 * 20 9 7 37 37 H 1.09004 * 113.76554 * 318.94186 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5645 1.4445 0.1298 5 6 1.6387 2.1253 -1.3091 6 8 2.2115 1.4176 -2.4105 7 6 1.4359 2.1889 1.1614 8 8 0.7969 3.2009 0.9657 9 7 1.6059 1.7319 2.4179 10 6 2.2288 0.5300 3.0059 11 6 2.4130 1.3762 4.2787 12 6 2.1010 0.6327 5.5519 13 1 1.7814 -0.3981 5.5109 14 6 2.2225 1.2689 6.7690 15 7 2.6112 2.5243 6.8190 16 14 1.8351 0.3476 8.3472 17 1 1.4217 -1.0408 8.0212 18 1 3.0429 0.3151 9.2107 19 1 0.7323 1.0364 9.0645 20 6 1.2440 2.2320 3.7584 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.8463 1.0551 1.1081 27 1 3.9963 0.8166 -0.6495 28 1 3.9369 2.4634 0.0233 29 1 0.5527 2.1239 -1.4016 30 1 2.0017 3.1531 -1.3089 31 1 1.9985 1.7958 -3.2746 32 1 3.1663 0.2432 2.5294 33 1 1.5401 -0.3058 3.1298 34 1 3.3641 1.9071 4.3188 35 1 2.6964 2.9720 7.6753 36 1 0.2660 1.8963 4.1033 37 1 1.3952 3.3043 3.8827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598021470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:44 Heat of formation + Delta-G solvation = -87.977336 kcal Electronic energy + Delta-G solvation = -18287.009841 eV Core-core repulsion = 15450.254937 eV Total energy + Delta-G solvation = -2836.754904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62331 -39.24052 -37.93635 -35.76941 -34.58767 -31.54855 -30.72000 -27.50825 -27.14594 -26.75517 -24.50231 -23.27285 -21.16620 -19.45127 -18.68463 -18.31158 -17.45251 -16.80114 -16.61610 -16.34958 -16.02627 -15.28509 -15.03857 -14.36894 -14.15678 -13.96656 -13.87763 -13.63779 -13.38076 -13.12538 -13.09092 -12.82113 -12.74683 -12.48115 -12.15283 -12.11548 -11.90024 -11.59296 -11.25927 -11.05903 -10.87890 -10.59791 -10.44467 -9.53831 -8.16119 -6.27919 1.45807 1.49036 1.59551 1.62923 1.94064 2.45767 3.14102 3.23022 3.48254 3.77282 3.87623 4.15311 4.21528 4.31601 4.47234 4.48285 4.54525 4.57501 4.59945 4.66253 4.74313 4.81294 4.90074 4.94105 5.01422 5.06848 5.10114 5.20568 5.25921 5.41133 5.59870 5.82292 6.22484 6.82675 6.87466 6.92340 7.15172 7.42998 8.94066 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044686 B = 0.005720 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.450205 B = 4894.113082 C = 5008.775280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.071 4.071 4 C -0.133 4.133 5 C 0.109 3.891 6 O -0.570 6.570 7 C 0.535 3.465 8 O -0.604 6.604 9 N -0.634 5.634 10 C 0.114 3.886 11 C 0.022 3.978 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.016 3.984 15 N -0.924 5.924 16 Si 0.959 3.041 17 H -0.258 1.258 18 H -0.282 1.282 19 H -0.286 1.286 20 C 0.113 3.887 21 H 0.025 0.975 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -6.431 -14.240 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.074 4.074 4 C -0.191 4.191 5 C 0.031 3.969 6 O -0.378 6.378 7 C 0.326 3.674 8 O -0.487 6.487 9 N -0.366 5.366 10 C -0.007 4.007 11 C 0.003 3.997 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.785 3.215 17 H -0.182 1.182 18 H -0.208 1.208 19 H -0.213 1.213 20 C -0.010 4.010 21 H 0.045 0.955 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.249 0.751 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.301 -6.077 -13.941 15.211 hybrid contribution -0.589 0.785 0.791 1.260 sum -0.890 -5.292 -13.150 14.203 Atomic orbital electron populations 1.21823 0.95879 1.02546 1.00721 1.21574 0.95923 0.92573 1.04120 1.20718 0.98093 0.97307 0.91274 1.21801 0.91350 1.02562 1.03337 1.21635 0.96652 0.93421 0.85237 1.86338 1.76772 1.57183 1.17482 1.20697 0.78939 0.84438 0.83344 1.90604 1.44330 1.28700 1.85101 1.50312 1.56995 1.25057 1.04232 1.23568 0.97342 0.88536 0.91248 1.20439 0.93638 0.93118 0.92493 1.21366 1.45530 0.98674 0.90741 0.90899 1.25832 0.94431 0.95503 1.02634 1.70094 1.47596 1.12123 1.26477 0.85486 0.77527 0.79274 0.79249 1.18205 1.20839 1.21272 1.23404 1.00710 0.98376 0.78516 0.95540 0.92354 0.90434 0.88510 0.90809 0.91924 0.89014 0.93267 0.93321 0.94128 0.75072 0.88990 0.89003 0.94515 0.92842 0.91378 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.35 71.98 0.67 -3.21 16 2 C -0.10 -2.60 4.67 30.60 0.14 -2.46 16 3 C -0.07 -2.08 0.40 -52.93 -0.02 -2.10 16 4 C -0.13 -3.56 8.19 71.98 0.59 -2.97 16 5 C 0.11 2.86 4.97 71.98 0.36 3.22 16 6 O -0.57 -11.39 12.34 -148.98 -1.84 -13.23 16 7 C 0.53 20.88 5.20 87.65 0.46 21.34 16 8 O -0.60 -27.98 16.71 -3.04 -0.05 -28.04 16 9 N -0.63 -25.57 3.51 -836.68 -2.94 -28.51 16 10 C 0.11 4.14 5.78 86.48 0.50 4.64 16 11 C 0.02 1.05 3.62 -10.88 -0.04 1.01 16 12 C -0.52 -26.31 8.77 25.60 0.22 -26.09 16 13 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 14 C 0.02 0.82 5.46 84.65 0.46 1.28 16 15 N -0.92 -52.23 13.27 21.45 0.28 -51.95 16 16 Si 0.96 41.11 29.54 68.60 2.03 43.14 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.11 5.29 8.39 86.48 0.73 6.02 16 21 H 0.03 0.81 7.07 -2.39 -0.02 0.80 16 22 H 0.06 1.42 6.57 -2.39 -0.02 1.40 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.10 2.10 7.53 -2.39 -0.02 2.09 16 25 H 0.07 1.81 5.93 -2.39 -0.01 1.80 16 26 H 0.06 1.71 5.50 -2.39 -0.01 1.70 16 27 H 0.09 2.07 7.87 -2.39 -0.02 2.05 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 1.32 6.55 -2.39 -0.02 1.30 16 30 H 0.04 1.14 8.07 -2.38 -0.02 1.13 16 31 H 0.40 4.23 9.12 -74.05 -0.68 3.55 16 32 H 0.09 2.85 5.90 -2.39 -0.01 2.83 16 33 H 0.09 3.08 8.06 -2.38 -0.02 3.06 16 34 H 0.04 1.91 8.13 -2.39 -0.02 1.89 16 35 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.07 3.20 8.09 -2.39 -0.02 3.18 16 37 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.18 296.43 1.95 -62.23 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.39 Total: 15.67 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.07 Total: 0.68 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -2.65 Total: -80.46 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.89 Total: -41.26 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -64.18 1.95 -62.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.746 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds