Wall clock time and date at job start Mon Mar 30 2020 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00251 * 2 1 4 4 C 1.53003 * 109.46473 * 60.00407 * 3 2 1 5 5 C 1.52996 * 109.47353 * 300.00507 * 3 2 1 6 6 C 1.52994 * 109.47326 * 180.02562 * 3 2 1 7 7 C 1.50703 * 109.47307 * 302.98923 * 6 3 2 8 8 O 1.21281 * 119.99730 * 6.35529 * 7 6 3 9 9 N 1.34771 * 120.00152 * 186.34895 * 7 6 3 10 10 C 1.47070 * 136.05767 * 359.63597 * 9 7 6 11 11 C 1.53759 * 87.88970 * 152.96141 * 10 9 7 12 12 C 1.50689 * 114.26977 * 139.79455 * 11 10 9 13 13 H 1.08003 * 119.99906 * 266.47579 * 12 11 10 14 14 C 1.37879 * 120.00502 * 86.47262 * 12 11 10 15 15 N 1.31511 * 119.99790 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00255 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46760 * 90.00299 * 16 14 12 18 18 H 1.48501 * 109.46781 * 209.99877 * 16 14 12 19 19 H 1.48496 * 109.47294 * 330.00261 * 16 14 12 20 20 C 1.47070 * 136.05972 * 179.97438 * 9 7 6 21 21 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47073 * 299.99805 * 1 2 3 23 23 H 1.09003 * 109.47357 * 59.99322 * 1 2 3 24 24 H 1.09003 * 109.47194 * 179.97438 * 4 3 2 25 25 H 1.08994 * 109.47342 * 299.99788 * 4 3 2 26 26 H 1.09006 * 109.47372 * 60.00012 * 4 3 2 27 27 H 1.09001 * 109.46945 * 305.99319 * 5 3 2 28 28 H 1.09001 * 109.47008 * 65.99500 * 5 3 2 29 29 H 1.08997 * 109.47038 * 185.99211 * 5 3 2 30 30 H 1.09001 * 109.47245 * 62.98666 * 6 3 2 31 31 H 1.08997 * 109.47253 * 182.99139 * 6 3 2 32 32 H 1.09004 * 113.46771 * 267.68846 * 10 9 7 33 33 H 1.09001 * 113.46975 * 38.13287 * 10 9 7 34 34 H 1.09003 * 114.38934 * 272.67564 * 11 10 9 35 35 H 0.96998 * 120.00527 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.47112 * 321.87525 * 20 9 7 37 37 H 1.09004 * 113.46407 * 92.24880 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0646 1.2494 5 6 1.5587 2.0648 -1.2491 6 6 3.5354 1.1846 -0.0006 7 6 3.9756 0.3736 1.1908 8 8 3.1490 -0.1612 1.8991 9 7 5.2877 0.2424 1.4690 10 6 6.5485 0.7108 0.8740 11 6 7.1762 0.6231 2.2749 12 6 8.5819 0.0804 2.2908 13 1 8.7517 -0.9743 2.4498 14 6 9.6512 0.9301 2.1024 15 7 9.4444 2.2144 1.9092 16 14 11.3938 0.2574 2.1229 17 1 11.7868 -0.1407 0.7473 18 1 12.3226 1.3041 2.6198 19 1 11.4570 -0.9260 3.0178 20 6 6.0893 -0.4372 2.4979 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 2.0025 3.0602 1.2497 25 1 0.4722 2.1507 1.2494 26 1 1.8804 1.5236 2.1393 27 1 1.7857 1.4730 -2.1359 28 1 0.4849 2.2441 -1.1970 29 1 2.0840 3.0183 -1.3043 30 1 3.8604 0.6908 -0.9164 31 1 3.9787 2.1790 0.0530 32 1 6.9793 0.0082 0.1607 33 1 6.4932 1.7273 0.4844 34 1 7.0544 1.5217 2.8797 35 1 10.1966 2.8122 1.7763 36 1 5.6429 -0.3988 3.4916 37 1 6.3980 -1.4432 2.2134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:46 Heat of formation + Delta-G solvation = -51.248266 kcal Electronic energy + Delta-G solvation = -17826.473357 eV Core-core repulsion = 14991.311145 eV Total energy + Delta-G solvation = -2835.162212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76318 -38.53288 -36.69080 -33.19095 -32.66241 -29.72349 -27.89109 -27.32833 -26.38125 -24.91251 -24.66092 -20.67348 -19.70413 -18.10628 -16.85190 -16.46992 -16.02010 -15.45940 -15.03614 -14.81100 -14.49390 -14.24582 -13.56490 -13.29174 -12.90714 -12.43667 -12.23859 -12.03142 -11.88755 -11.70832 -11.49621 -11.43101 -11.33888 -11.01245 -10.91335 -10.75070 -10.46257 -10.30851 -9.55719 -9.36071 -9.16348 -8.82046 -8.55770 -7.74428 -6.17304 -4.22462 3.24466 3.31992 3.32581 3.35462 3.67734 3.92602 4.34479 4.77048 4.89452 5.05117 5.12675 5.33666 5.37474 5.46412 5.51311 5.60495 5.67727 5.72068 5.83011 5.88085 6.04199 6.07161 6.12780 6.24102 6.35074 6.49955 6.51651 6.62655 6.72170 6.86510 7.43688 7.57843 7.80908 8.20772 8.65779 8.81612 8.92939 9.44288 10.92542 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053120 B = 0.004812 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.985864 B = 5817.155161 C = 6027.787656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.128 3.872 4 C -0.183 4.183 5 C -0.178 4.178 6 C -0.122 4.122 7 C 0.533 3.467 8 O -0.545 6.545 9 N -0.649 5.649 10 C 0.098 3.902 11 C 0.034 3.966 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.101 3.899 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 1.011 -5.736 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.088 3.912 4 C -0.241 4.241 5 C -0.235 4.235 6 C -0.162 4.162 7 C 0.323 3.677 8 O -0.424 6.424 9 N -0.384 5.384 10 C -0.025 4.025 11 C 0.015 3.985 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.022 4.022 21 H 0.098 0.902 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.821 0.769 -5.441 13.949 hybrid contribution 0.797 0.014 -0.265 0.840 sum -12.024 0.783 -5.705 13.332 Atomic orbital electron populations 1.22688 0.82489 1.02116 0.99461 1.88102 1.18507 1.26385 1.94781 1.21130 0.92015 0.83882 0.94128 1.22531 1.01025 1.00519 0.99985 1.22437 1.01734 1.01062 0.98268 1.21650 0.94098 1.01854 0.98609 1.19883 0.80562 0.81451 0.85822 1.90626 1.51074 1.49462 1.51188 1.50063 1.03856 1.52381 1.32055 1.23618 0.79665 0.98023 1.01184 1.20378 0.92286 0.94413 0.91404 1.20931 0.89672 0.94564 1.50288 0.91871 1.25022 0.99392 0.94726 0.94361 1.69948 1.31628 1.02928 1.47891 0.86542 0.83968 0.78804 0.78420 1.20522 1.21146 1.19684 1.23276 0.89990 0.98209 0.90686 0.90249 0.94051 0.94576 0.92134 0.92698 0.89654 0.91725 0.92157 0.91321 0.88720 0.88135 0.90972 0.92359 0.91431 0.92673 0.92670 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.21 101.05 1.03 1.39 16 2 O -0.36 -5.80 8.89 -56.00 -0.50 -6.30 16 3 C 0.13 1.82 0.71 -90.62 -0.06 1.76 16 4 C -0.18 -2.55 7.97 37.16 0.30 -2.26 16 5 C -0.18 -1.91 8.06 37.16 0.30 -1.61 16 6 C -0.12 -1.90 4.79 -27.88 -0.13 -2.04 16 7 C 0.53 10.68 7.56 -10.99 -0.08 10.60 16 8 O -0.54 -12.31 13.99 -15.21 -0.21 -12.53 16 9 N -0.65 -13.54 3.69 -185.05 -0.68 -14.22 16 10 C 0.10 2.07 8.00 -8.37 -0.07 2.00 16 11 C 0.03 0.81 3.79 -91.14 -0.35 0.47 16 12 C -0.52 -13.21 8.83 -34.45 -0.30 -13.52 16 13 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.09 13.26 55.43 0.74 -23.35 16 16 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 20 C 0.10 2.16 8.17 -8.52 -0.07 2.09 16 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.48 6.42 -51.93 -0.33 0.15 16 23 H 0.04 0.36 6.56 -51.93 -0.34 0.02 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 26 H 0.08 1.46 6.01 -51.93 -0.31 1.15 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.57 6.88 -51.93 -0.36 0.22 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 302.21 15.07 4.55 4.55 Total: -1.00 -29.47 302.21 -6.53 -36.00 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.87 Total: 0.25 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 0.46 Total: 0.56 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.05 Total: -37.57 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.71 Total: -18.83 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.47 -6.53 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.250 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds