Wall clock time and date at job start Mon Mar 30 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00251 * 2 1 4 4 C 1.53003 * 109.46473 * 60.00407 * 3 2 1 5 5 C 1.52996 * 109.47353 * 300.00507 * 3 2 1 6 6 C 1.52994 * 109.47326 * 180.02562 * 3 2 1 7 7 C 1.50703 * 109.47307 * 302.98923 * 6 3 2 8 8 O 1.21281 * 119.99730 * 6.35529 * 7 6 3 9 9 N 1.34771 * 120.00152 * 186.34895 * 7 6 3 10 10 C 1.47070 * 136.05767 * 359.63597 * 9 7 6 11 11 C 1.53759 * 87.88970 * 152.96141 * 10 9 7 12 12 C 1.50689 * 114.26977 * 139.79455 * 11 10 9 13 13 H 1.08003 * 119.99906 * 266.47579 * 12 11 10 14 14 C 1.37879 * 120.00502 * 86.47262 * 12 11 10 15 15 N 1.31511 * 119.99790 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00255 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46760 * 90.00299 * 16 14 12 18 18 H 1.48501 * 109.46781 * 209.99877 * 16 14 12 19 19 H 1.48496 * 109.47294 * 330.00261 * 16 14 12 20 20 C 1.47070 * 136.05972 * 179.97438 * 9 7 6 21 21 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47073 * 299.99805 * 1 2 3 23 23 H 1.09003 * 109.47357 * 59.99322 * 1 2 3 24 24 H 1.09003 * 109.47194 * 179.97438 * 4 3 2 25 25 H 1.08994 * 109.47342 * 299.99788 * 4 3 2 26 26 H 1.09006 * 109.47372 * 60.00012 * 4 3 2 27 27 H 1.09001 * 109.46945 * 305.99319 * 5 3 2 28 28 H 1.09001 * 109.47008 * 65.99500 * 5 3 2 29 29 H 1.08997 * 109.47038 * 185.99211 * 5 3 2 30 30 H 1.09001 * 109.47245 * 62.98666 * 6 3 2 31 31 H 1.08997 * 109.47253 * 182.99139 * 6 3 2 32 32 H 1.09004 * 113.46771 * 267.68846 * 10 9 7 33 33 H 1.09001 * 113.46975 * 38.13287 * 10 9 7 34 34 H 1.09003 * 114.38934 * 272.67564 * 11 10 9 35 35 H 0.96998 * 120.00527 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.47112 * 321.87525 * 20 9 7 37 37 H 1.09004 * 113.46407 * 92.24880 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0646 1.2494 5 6 1.5587 2.0648 -1.2491 6 6 3.5354 1.1846 -0.0006 7 6 3.9756 0.3736 1.1908 8 8 3.1490 -0.1612 1.8991 9 7 5.2877 0.2424 1.4690 10 6 6.5485 0.7108 0.8740 11 6 7.1762 0.6231 2.2749 12 6 8.5819 0.0804 2.2908 13 1 8.7517 -0.9743 2.4498 14 6 9.6512 0.9301 2.1024 15 7 9.4444 2.2144 1.9092 16 14 11.3938 0.2574 2.1229 17 1 11.7868 -0.1407 0.7473 18 1 12.3226 1.3041 2.6198 19 1 11.4570 -0.9260 3.0178 20 6 6.0893 -0.4372 2.4979 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 2.0025 3.0602 1.2497 25 1 0.4722 2.1507 1.2494 26 1 1.8804 1.5236 2.1393 27 1 1.7857 1.4730 -2.1359 28 1 0.4849 2.2441 -1.1970 29 1 2.0840 3.0183 -1.3043 30 1 3.8604 0.6908 -0.9164 31 1 3.9787 2.1790 0.0530 32 1 6.9793 0.0082 0.1607 33 1 6.4932 1.7273 0.4844 34 1 7.0544 1.5217 2.8797 35 1 10.1966 2.8122 1.7763 36 1 5.6429 -0.3988 3.4916 37 1 6.3980 -1.4432 2.2134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:45 Heat of formation + Delta-G solvation = -68.774059 kcal Electronic energy + Delta-G solvation = -17827.233332 eV Core-core repulsion = 14991.311145 eV Total energy + Delta-G solvation = -2835.922187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25741 -39.89477 -38.27399 -34.62854 -34.31405 -31.33094 -29.23014 -28.29036 -27.57438 -26.69311 -26.32119 -22.33883 -20.90772 -19.70773 -18.72106 -17.89878 -17.41657 -16.82024 -16.44025 -16.32947 -15.89956 -15.65903 -15.18598 -14.35015 -14.25977 -13.96318 -13.59333 -13.26498 -13.22152 -13.14155 -12.93271 -12.75203 -12.71752 -12.57715 -12.44132 -12.21287 -12.08765 -11.50522 -11.33561 -11.03319 -10.65286 -10.50583 -10.28993 -9.46133 -8.15217 -6.26090 1.48406 1.50639 1.60021 1.76433 2.09320 2.48037 2.90222 3.15084 3.59860 3.72322 4.00643 4.13341 4.31095 4.40887 4.49122 4.54688 4.56255 4.57588 4.63309 4.69548 4.71814 4.73314 4.86278 4.89271 4.91059 4.97869 5.06442 5.15278 5.22193 5.42257 5.61309 5.83121 6.25788 6.43457 6.82114 7.01927 7.31308 7.44127 8.94819 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053120 B = 0.004812 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.985864 B = 5817.155161 C = 6027.787656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.123 3.877 4 C -0.180 4.180 5 C -0.169 4.169 6 C -0.119 4.119 7 C 0.526 3.474 8 O -0.573 6.573 9 N -0.652 5.652 10 C 0.114 3.886 11 C 0.023 3.977 12 C -0.529 4.529 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.918 5.918 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.104 3.896 21 H 0.084 0.916 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.051 0.949 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 1.247 -7.193 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C 0.083 3.917 4 C -0.238 4.238 5 C -0.226 4.226 6 C -0.158 4.158 7 C 0.318 3.682 8 O -0.454 6.454 9 N -0.387 5.387 10 C -0.008 4.008 11 C 0.004 3.996 12 C -0.568 4.568 13 H 0.082 0.918 14 C -0.177 4.177 15 N -0.556 5.556 16 Si 0.783 3.217 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.019 4.019 21 H 0.103 0.897 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.219 1.001 -6.906 14.948 hybrid contribution 0.846 -0.079 0.250 0.886 sum -12.373 0.922 -6.655 14.079 Atomic orbital electron populations 1.22856 0.80759 1.02965 1.00614 1.88044 1.20590 1.27709 1.95077 1.21282 0.90872 0.83773 0.95757 1.22486 1.02296 1.00601 0.98385 1.22363 1.02840 1.01171 0.96275 1.21767 0.95637 1.01860 0.96558 1.20753 0.79625 0.81221 0.86601 1.90614 1.51564 1.50675 1.52499 1.50122 1.04324 1.52467 1.31781 1.23350 0.79356 0.98513 0.99621 1.20261 0.92435 0.93960 0.92950 1.21212 0.90751 0.94720 1.50071 0.91783 1.25734 1.02997 0.94912 0.94082 1.70047 1.32659 1.03973 1.48921 0.85557 0.79421 0.78088 0.78601 1.19800 1.21184 1.19288 1.23155 0.89592 0.98046 0.91085 0.89744 0.94052 0.92118 0.90739 0.90927 0.93477 0.91304 0.90640 0.89799 0.87451 0.86384 0.90408 0.91765 0.94247 0.92613 0.93019 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.21 113.37 1.16 1.70 16 2 O -0.39 -12.24 8.89 -129.12 -1.15 -13.39 16 3 C 0.12 3.24 0.71 -10.80 -0.01 3.24 16 4 C -0.18 -4.78 7.97 71.98 0.57 -4.21 16 5 C -0.17 -3.07 8.06 71.98 0.58 -2.49 16 6 C -0.12 -3.50 4.79 29.85 0.14 -3.36 16 7 C 0.53 20.89 7.56 87.66 0.66 21.55 16 8 O -0.57 -26.14 13.99 16.82 0.24 -25.91 16 9 N -0.65 -27.06 3.69 -857.77 -3.16 -30.22 16 10 C 0.11 4.78 8.00 83.27 0.67 5.44 16 11 C 0.02 1.11 3.79 -11.13 -0.04 1.07 16 12 C -0.53 -27.10 8.83 25.60 0.23 -26.87 16 13 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 14 C 0.02 1.19 5.46 84.66 0.46 1.65 16 15 N -0.92 -49.96 13.26 21.45 0.28 -49.67 16 16 Si 0.96 40.77 29.54 68.60 2.03 42.80 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 C 0.10 4.51 8.17 83.17 0.68 5.19 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.04 0.90 6.42 -2.39 -0.02 0.89 16 23 H 0.06 1.04 6.56 -2.39 -0.02 1.02 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.07 1.61 6.54 -2.39 -0.02 1.60 16 26 H 0.05 1.62 6.01 -2.38 -0.01 1.60 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.15 6.88 -2.39 -0.02 1.13 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.08 3.17 8.10 -2.38 -0.02 3.15 16 33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.04 2.09 8.11 -2.39 -0.02 2.07 16 35 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 37 H 0.08 3.23 8.10 -2.38 -0.02 3.22 16 Total: -1.00 -62.93 302.21 4.37 -58.56 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.04 Total: 14.92 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.10 Total: 2.91 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.88 Total: -79.89 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.91 Total: -39.29 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -62.93 4.37 -58.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.217 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds