Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 O 1.42895 * 109.47162 * 239.99389 * 2 1 3 5 5 C 1.53006 * 109.46623 * 119.99820 * 2 1 3 6 6 C 1.52997 * 109.47127 * 60.00064 * 5 2 1 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 2 8 8 O 1.21279 * 120.00218 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.47069 * 136.05284 * 359.63697 * 9 7 6 11 11 C 1.53758 * 87.88391 * 152.95561 * 10 9 7 12 12 C 1.50709 * 114.26562 * 139.78735 * 11 10 9 13 13 H 1.07996 * 120.00245 * 266.47753 * 12 11 10 14 14 C 1.37875 * 119.99790 * 86.47657 * 12 11 10 15 15 N 1.31513 * 120.00274 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99934 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47300 * 90.00273 * 16 14 12 18 18 H 1.48505 * 109.46924 * 209.99819 * 16 14 12 19 19 H 1.48500 * 109.47064 * 329.99954 * 16 14 12 20 20 C 1.47059 * 136.05949 * 179.97438 * 9 7 6 21 21 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 23 23 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 26 26 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 27 27 H 0.96696 * 114.00485 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47002 * 179.97438 * 5 2 1 29 29 H 1.08993 * 109.46955 * 300.00075 * 5 2 1 30 30 H 1.09001 * 109.47289 * 299.99953 * 6 5 2 31 31 H 1.09004 * 109.47261 * 59.99697 * 6 5 2 32 32 H 1.08995 * 113.46811 * 267.68445 * 10 9 7 33 33 H 1.09000 * 113.46782 * 38.13190 * 10 9 7 34 34 H 1.08994 * 114.40031 * 272.67293 * 11 10 9 35 35 H 0.97001 * 119.99974 * 179.97438 * 15 14 12 36 36 H 1.09000 * 113.46879 * 321.87522 * 20 9 7 37 37 H 1.09010 * 113.46500 * 92.25198 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2494 6 6 1.5298 -2.1637 1.2494 7 6 2.0326 -2.8743 2.4795 8 8 2.7297 -2.2849 3.2779 9 7 1.7066 -4.1645 2.6931 10 6 0.9095 -5.1847 1.9954 11 6 1.8006 -6.2501 2.6549 12 6 1.0571 -7.4722 3.1293 13 1 0.7072 -7.5293 4.1494 14 6 0.8236 -8.5174 2.2609 15 7 0.1753 -9.5840 2.6749 16 14 1.4295 -8.4189 0.4966 17 1 2.8011 -8.9817 0.4120 18 1 0.5203 -9.1967 -0.3831 19 1 1.4486 -7.0002 0.0582 20 6 1.9864 -5.1699 3.7292 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 2.9703 -0.7123 -1.2326 28 1 3.1299 -0.7217 1.2492 29 1 1.6765 -0.2074 2.1392 30 1 0.4398 -2.1637 1.2493 31 1 1.8932 -2.6776 0.3594 32 1 -0.1290 -5.2237 2.3238 33 1 1.0079 -5.1455 0.9105 34 1 2.7071 -6.4867 2.0978 35 1 0.0107 -10.3192 2.0639 36 1 3.0021 -5.1180 4.1213 37 1 1.2324 -5.2042 4.5157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022715.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = -67.744661 kcal Electronic energy + Delta-G solvation = -17525.093373 eV Core-core repulsion = 14689.215823 eV Total energy + Delta-G solvation = -2835.877549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78001 -38.62586 -37.17014 -33.33443 -32.66054 -31.02803 -29.38683 -27.56873 -25.85803 -25.09102 -23.65916 -20.43942 -19.99459 -18.25973 -17.23329 -16.82418 -16.21956 -15.74899 -15.34016 -14.95580 -14.44080 -14.21378 -13.71968 -13.13143 -13.03490 -12.76946 -12.44714 -12.26431 -12.15056 -11.95905 -11.83857 -11.74011 -11.54000 -10.99715 -10.86085 -10.70087 -10.66595 -10.10286 -10.07071 -9.82190 -9.36818 -9.11934 -8.67179 -8.04216 -6.22203 -4.25058 3.06908 3.20663 3.29953 3.30107 3.45109 4.07493 4.29944 4.59891 4.64075 4.76939 5.01566 5.10987 5.19557 5.28469 5.41523 5.55075 5.61084 5.70574 5.74482 5.77106 5.87269 5.94390 5.97141 6.11191 6.15942 6.20139 6.25192 6.34163 6.41586 6.55279 7.13157 7.52564 7.53575 8.31549 8.40625 8.63991 8.81373 9.38882 10.89800 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.005318 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.845571 B = 5263.576757 C = 5748.738043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.124 3.876 3 C -0.176 4.176 4 O -0.560 6.560 5 C -0.126 4.126 6 C -0.131 4.131 7 C 0.530 3.470 8 O -0.566 6.566 9 N -0.646 5.646 10 C 0.084 3.916 11 C -0.007 4.007 12 C -0.514 4.514 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.892 5.892 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.260 1.260 20 C 0.112 3.888 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.375 0.625 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.060 0.940 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 16.851 -6.858 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.083 3.917 3 C -0.234 4.234 4 O -0.366 6.366 5 C -0.164 4.164 6 C -0.171 4.171 7 C 0.320 3.680 8 O -0.447 6.447 9 N -0.380 5.380 10 C -0.038 4.038 11 C -0.026 4.026 12 C -0.551 4.551 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.702 3.298 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.185 1.185 20 C -0.010 4.010 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.222 0.778 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.290 17.132 -6.638 18.418 hybrid contribution 0.749 -0.038 -0.821 1.112 sum 2.039 17.094 -7.459 18.761 Atomic orbital electron populations 1.21823 0.92766 1.03163 1.02256 1.21263 0.95013 0.90583 0.84798 1.22467 1.01525 0.96733 1.02678 1.86546 1.26639 1.79536 1.43910 1.22011 1.01650 0.94576 0.98166 1.21555 1.02480 0.95995 0.97059 1.20254 0.80525 0.79594 0.87581 1.90632 1.40251 1.65199 1.48576 1.50008 1.50927 1.09201 1.27859 1.23971 0.97387 0.85376 0.97100 1.20793 0.95708 0.92652 0.93482 1.20775 1.36069 0.98629 0.99664 0.90233 1.25008 0.94187 0.94797 0.98646 1.69893 1.40189 1.06658 1.36133 0.86890 0.79075 0.78969 0.84826 1.20147 1.21213 1.18450 1.23091 1.00310 0.84506 0.93067 0.91148 0.92035 0.91410 0.92302 0.91881 0.91518 0.77761 0.91046 0.90414 0.89111 0.88768 0.89728 0.92252 0.92203 0.92340 0.92135 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.49 37.16 0.32 -1.08 16 2 C 0.12 1.26 1.09 -90.62 -0.10 1.16 16 3 C -0.18 -1.48 8.82 37.16 0.33 -1.15 16 4 O -0.56 -6.07 12.30 -35.23 -0.43 -6.50 16 5 C -0.13 -1.53 3.74 -26.73 -0.10 -1.63 16 6 C -0.13 -1.86 5.03 -27.89 -0.14 -2.00 16 7 C 0.53 9.84 8.08 -10.98 -0.09 9.75 16 8 O -0.57 -12.07 16.76 5.56 0.09 -11.98 16 9 N -0.65 -12.57 3.69 -185.07 -0.68 -13.25 16 10 C 0.08 1.65 7.44 -8.37 -0.06 1.58 16 11 C -0.01 -0.15 2.96 -91.13 -0.27 -0.42 16 12 C -0.51 -13.30 9.39 -34.44 -0.32 -13.62 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 16 Si 0.88 19.91 27.15 -169.99 -4.62 15.30 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.26 -5.51 5.72 56.52 0.32 -5.19 16 20 C 0.11 2.27 8.17 -8.52 -0.07 2.20 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.38 2.89 9.05 45.56 0.41 3.30 16 28 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.09 1.19 6.43 -51.93 -0.33 0.86 16 31 H 0.09 1.31 7.68 -51.93 -0.40 0.91 16 32 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 33 H 0.06 1.10 7.15 -51.93 -0.37 0.73 16 34 H 0.06 1.32 7.03 -51.93 -0.37 0.95 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -30.56 303.85 -6.14 -36.70 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.25 Total: 3.30 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.61 Total: -3.24 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.09 Total: -38.16 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.34 Total: -18.48 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.62 Total: 15.30 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.56 -6.14 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022715.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.045 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds