Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 O 1.42895 * 109.47162 * 239.99389 * 2 1 3 5 5 C 1.53006 * 109.46623 * 119.99820 * 2 1 3 6 6 C 1.52997 * 109.47127 * 60.00064 * 5 2 1 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 2 8 8 O 1.21279 * 120.00218 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.47069 * 136.05284 * 359.63697 * 9 7 6 11 11 C 1.53758 * 87.88391 * 152.95561 * 10 9 7 12 12 C 1.50709 * 114.26562 * 139.78735 * 11 10 9 13 13 H 1.07996 * 120.00245 * 266.47753 * 12 11 10 14 14 C 1.37875 * 119.99790 * 86.47657 * 12 11 10 15 15 N 1.31513 * 120.00274 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99934 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47300 * 90.00273 * 16 14 12 18 18 H 1.48505 * 109.46924 * 209.99819 * 16 14 12 19 19 H 1.48500 * 109.47064 * 329.99954 * 16 14 12 20 20 C 1.47059 * 136.05949 * 179.97438 * 9 7 6 21 21 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 23 23 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 26 26 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 27 27 H 0.96696 * 114.00485 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47002 * 179.97438 * 5 2 1 29 29 H 1.08993 * 109.46955 * 300.00075 * 5 2 1 30 30 H 1.09001 * 109.47289 * 299.99953 * 6 5 2 31 31 H 1.09004 * 109.47261 * 59.99697 * 6 5 2 32 32 H 1.08995 * 113.46811 * 267.68445 * 10 9 7 33 33 H 1.09000 * 113.46782 * 38.13190 * 10 9 7 34 34 H 1.08994 * 114.40031 * 272.67293 * 11 10 9 35 35 H 0.97001 * 119.99974 * 179.97438 * 15 14 12 36 36 H 1.09000 * 113.46879 * 321.87522 * 20 9 7 37 37 H 1.09010 * 113.46500 * 92.25198 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2494 6 6 1.5298 -2.1637 1.2494 7 6 2.0326 -2.8743 2.4795 8 8 2.7297 -2.2849 3.2779 9 7 1.7066 -4.1645 2.6931 10 6 0.9095 -5.1847 1.9954 11 6 1.8006 -6.2501 2.6549 12 6 1.0571 -7.4722 3.1293 13 1 0.7072 -7.5293 4.1494 14 6 0.8236 -8.5174 2.2609 15 7 0.1753 -9.5840 2.6749 16 14 1.4295 -8.4189 0.4966 17 1 2.8011 -8.9817 0.4120 18 1 0.5203 -9.1967 -0.3831 19 1 1.4486 -7.0002 0.0582 20 6 1.9864 -5.1699 3.7292 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 2.9703 -0.7123 -1.2326 28 1 3.1299 -0.7217 1.2492 29 1 1.6765 -0.2074 2.1392 30 1 0.4398 -2.1637 1.2493 31 1 1.8932 -2.6776 0.3594 32 1 -0.1290 -5.2237 2.3238 33 1 1.0079 -5.1455 0.9105 34 1 2.7071 -6.4867 2.0978 35 1 0.0107 -10.3192 2.0639 36 1 3.0021 -5.1180 4.1213 37 1 1.2324 -5.2042 4.5157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022715.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = -89.569832 kcal Electronic energy + Delta-G solvation = -17526.039783 eV Core-core repulsion = 14689.215823 eV Total energy + Delta-G solvation = -2836.823960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27336 -39.64126 -38.61844 -34.66984 -34.24092 -32.18535 -30.90094 -28.26093 -27.49239 -26.75064 -24.89674 -21.85676 -21.07259 -19.78660 -19.13833 -18.13920 -17.18558 -17.01655 -16.70643 -16.34978 -15.83608 -15.33049 -15.19573 -14.73818 -14.22906 -14.01989 -13.67581 -13.47351 -13.36890 -13.16077 -12.89039 -12.74436 -12.62878 -12.53686 -12.43163 -11.99734 -11.83026 -11.62720 -11.46790 -11.22383 -10.92851 -10.75483 -10.60433 -9.63912 -8.27384 -6.35384 1.42946 1.45225 1.55400 1.60716 1.97803 2.39524 3.04342 3.32104 3.49959 3.80560 3.93337 4.02451 4.08256 4.25771 4.27135 4.37813 4.49152 4.59550 4.61662 4.74432 4.78286 4.80615 4.85408 4.90415 4.96334 5.02415 5.10736 5.20033 5.28879 5.36517 5.39847 5.60532 6.28410 6.70917 6.86984 6.89412 7.13289 7.32584 8.88158 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.005318 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.845571 B = 5263.576757 C = 5748.738043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 C -0.174 4.174 4 O -0.574 6.574 5 C -0.120 4.120 6 C -0.122 4.122 7 C 0.527 3.473 8 O -0.596 6.596 9 N -0.648 5.648 10 C 0.098 3.902 11 C -0.014 4.014 12 C -0.515 4.515 13 H 0.040 0.960 14 C 0.021 3.979 15 N -0.944 5.944 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.229 1.229 20 C 0.111 3.889 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.387 0.613 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.268 0.732 36 H 0.062 0.938 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 18.767 -9.006 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.088 3.912 3 C -0.231 4.231 4 O -0.382 6.382 5 C -0.159 4.159 6 C -0.161 4.161 7 C 0.319 3.681 8 O -0.478 6.478 9 N -0.381 5.381 10 C -0.024 4.024 11 C -0.034 4.034 12 C -0.553 4.553 13 H 0.059 0.941 14 C -0.177 4.177 15 N -0.583 5.583 16 Si 0.763 3.237 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.152 1.152 20 C -0.012 4.012 21 H 0.099 0.901 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.237 0.763 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.685 19.082 -8.788 21.076 hybrid contribution 0.645 -0.628 -0.023 0.900 sum 2.330 18.454 -8.811 20.582 Atomic orbital electron populations 1.21881 0.92527 1.02900 1.03091 1.21231 0.95208 0.91175 0.83577 1.22431 1.01940 0.95511 1.03214 1.86521 1.28006 1.79713 1.43938 1.21996 1.01295 0.93462 0.99111 1.21596 1.03226 0.96580 0.94737 1.21077 0.79615 0.78962 0.88436 1.90620 1.41556 1.65651 1.49990 1.50024 1.51057 1.09680 1.27371 1.23724 0.96800 0.83841 0.98050 1.20726 0.96049 0.91741 0.94880 1.20933 1.35822 1.00448 0.98098 0.94139 1.25867 0.94299 0.94199 1.03365 1.70040 1.42409 1.07862 1.37985 0.85861 0.78165 0.80600 0.79062 1.19980 1.21388 1.15196 1.22982 1.00454 0.84654 0.93065 0.90118 0.91521 0.92184 0.91715 0.91316 0.91010 0.76327 0.91578 0.91033 0.87699 0.87834 0.89576 0.90111 0.91603 0.92299 0.91915 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.49 71.98 0.61 -1.86 16 2 C 0.13 2.25 1.09 -10.79 -0.01 2.24 16 3 C -0.17 -2.43 8.82 71.98 0.63 -1.80 16 4 O -0.57 -10.72 12.30 -148.98 -1.83 -12.55 16 5 C -0.12 -2.63 3.74 30.60 0.11 -2.52 16 6 C -0.12 -3.11 5.03 29.85 0.15 -2.96 16 7 C 0.53 18.46 8.08 87.65 0.71 19.17 16 8 O -0.60 -24.63 16.76 -3.03 -0.05 -24.68 16 9 N -0.65 -23.92 3.69 -857.83 -3.16 -27.08 16 10 C 0.10 3.59 7.44 83.27 0.62 4.20 16 11 C -0.01 -0.61 2.96 -11.12 -0.03 -0.65 16 12 C -0.52 -26.99 9.39 25.60 0.24 -26.75 16 13 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 14 C 0.02 1.14 5.47 84.65 0.46 1.61 16 15 N -0.94 -55.58 13.96 21.45 0.30 -55.28 16 16 Si 0.94 40.01 27.15 68.60 1.86 41.87 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.23 -8.52 5.72 99.48 0.57 -7.95 16 20 C 0.11 4.43 8.17 83.17 0.68 5.11 16 21 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.39 4.86 9.05 -74.06 -0.67 4.20 16 28 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 29 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.10 2.42 6.43 -2.39 -0.02 2.40 16 31 H 0.10 2.51 7.68 -2.38 -0.02 2.49 16 32 H 0.09 3.14 8.10 -2.39 -0.02 3.12 16 33 H 0.08 2.63 7.15 -2.39 -0.02 2.61 16 34 H 0.07 2.75 7.03 -2.39 -0.02 2.73 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 3.06 8.10 -2.38 -0.02 3.04 16 Total: -1.00 -65.48 303.85 1.53 -63.95 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.24 Total: 17.96 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.18 Total: -4.19 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.86 Total: -82.36 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.88 Total: -37.23 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.86 Total: 41.87 kcal Total: -65.48 1.53 -63.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022715.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.622 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds