Wall clock time and date at job start Mon Mar 30 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47482 * 305.00259 * 3 2 1 5 5 O 1.42906 * 109.46831 * 65.00545 * 3 2 1 6 6 C 1.42896 * 114.00468 * 59.99809 * 5 3 2 7 7 C 1.50706 * 109.47161 * 184.99873 * 3 2 1 8 8 O 1.21282 * 119.99717 * 25.00437 * 7 3 2 9 9 N 1.34777 * 120.00195 * 205.00101 * 7 3 2 10 10 C 1.47064 * 136.05452 * 359.63514 * 9 7 3 11 11 C 1.53753 * 87.88748 * 152.96166 * 10 9 7 12 12 C 1.50697 * 114.09014 * 139.77924 * 11 10 9 13 13 H 1.08006 * 119.99699 * 266.55862 * 12 11 10 14 14 C 1.37879 * 120.00198 * 86.55959 * 12 11 10 15 15 N 1.31516 * 119.99815 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99705 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47222 * 89.99995 * 16 14 12 18 18 H 1.48502 * 109.46870 * 210.00015 * 16 14 12 19 19 H 1.48492 * 109.47502 * 330.00073 * 16 14 12 20 20 C 1.47063 * 136.05966 * 180.02562 * 9 7 3 21 21 H 1.08998 * 109.47494 * 299.99463 * 1 2 3 22 22 H 1.08993 * 109.47314 * 59.99963 * 1 2 3 23 23 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46818 * 239.99963 * 2 1 3 25 25 H 1.08996 * 109.47235 * 120.00802 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 28 28 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47354 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.46939 * 300.00234 * 6 5 3 31 31 H 1.09007 * 109.47066 * 59.99469 * 6 5 3 32 32 H 1.08998 * 113.46882 * 267.69077 * 10 9 7 33 33 H 1.08995 * 113.46959 * 38.13399 * 10 9 7 34 34 H 1.09007 * 114.57212 * 272.66423 * 11 10 9 35 35 H 0.96998 * 119.99802 * 180.02562 * 15 14 12 36 36 H 1.09006 * 113.46419 * 321.86812 * 20 9 7 37 37 H 1.08994 * 113.46859 * 92.30122 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.4299 2.1991 -1.1815 5 8 1.6620 2.0812 1.2212 6 6 2.1824 1.4500 2.3927 7 6 3.5419 1.4442 -0.1238 8 8 4.1086 0.5064 -0.6436 9 7 4.2553 2.4881 0.3430 10 6 3.9528 3.7661 1.0048 11 6 5.3483 3.6989 1.6466 12 6 6.0655 5.0232 1.6995 13 1 6.7431 5.3023 0.9061 14 6 5.8567 5.8785 2.7606 15 7 6.4822 7.0344 2.8064 16 14 4.6852 5.3953 4.1330 17 1 5.4334 4.6669 5.1889 18 1 4.0724 6.6170 4.7137 19 1 3.6186 4.5179 3.5875 20 6 5.6783 2.8535 0.4084 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.3435 2.1978 -1.0920 27 1 1.7182 1.7118 -2.1129 28 1 1.7929 3.2270 -1.1812 29 1 1.8509 1.9947 3.2767 30 1 1.8220 0.4225 2.4423 31 1 3.2717 1.4514 2.3528 32 1 3.8343 4.5974 0.3099 33 1 3.1381 3.6994 1.7258 34 1 5.3887 3.1492 2.5871 35 1 6.3356 7.6360 3.5530 36 1 6.3339 2.0091 0.6213 37 1 6.0144 3.4444 -0.4436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598025183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:47 Heat of formation + Delta-G solvation = -45.419155 kcal Electronic energy + Delta-G solvation = -18624.284119 eV Core-core repulsion = 15789.374677 eV Total energy + Delta-G solvation = -2834.909443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42060 -38.23643 -36.96596 -33.69654 -32.64115 -30.35529 -29.13914 -26.40890 -25.80843 -25.07297 -24.73856 -21.35106 -19.60844 -18.63311 -17.26686 -16.90057 -16.18777 -15.72243 -15.26841 -15.02721 -14.31743 -13.85812 -13.58932 -13.24054 -12.98635 -12.83574 -12.50527 -12.35192 -12.01444 -11.79684 -11.74562 -11.65114 -11.49528 -11.08372 -10.89083 -10.77341 -10.64782 -10.08882 -10.00714 -9.67523 -9.32721 -8.88410 -8.61943 -8.05206 -6.21114 -4.23572 2.88951 3.20937 3.28854 3.30750 3.35685 3.81783 4.31016 4.65081 4.78578 4.89901 5.03974 5.27544 5.34046 5.43142 5.53694 5.57300 5.63413 5.77100 5.81725 5.83431 5.89536 5.94703 5.96336 6.09130 6.18572 6.25986 6.27893 6.41061 6.50387 6.53792 7.12504 7.14528 7.54779 8.29451 8.37137 8.56976 8.82165 9.39989 10.90924 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.007594 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.969544 B = 3686.073834 C = 4095.004342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.107 3.893 4 C -0.136 4.136 5 O -0.364 6.364 6 C 0.019 3.981 7 C 0.511 3.489 8 O -0.559 6.559 9 N -0.634 5.634 10 C 0.088 3.912 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.892 5.892 16 Si 0.874 3.126 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.257 1.257 20 C 0.110 3.890 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -9.894 -2.691 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.065 3.935 4 C -0.193 4.193 5 O -0.282 6.282 6 C -0.077 4.077 7 C 0.300 3.700 8 O -0.440 6.440 9 N -0.366 5.366 10 C -0.035 4.035 11 C -0.027 4.027 12 C -0.550 4.550 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.700 3.300 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.182 1.182 20 C -0.012 4.012 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.509 -10.208 -2.928 15.660 hybrid contribution -0.357 -0.266 0.814 0.928 sum -11.866 -10.475 -2.114 15.968 Atomic orbital electron populations 1.21773 0.94736 1.01466 1.02534 1.21916 0.96659 0.94959 1.03917 1.21733 0.90114 0.94311 0.87375 1.21770 1.01832 1.00801 0.94939 1.87976 1.73690 1.53551 1.13012 1.22906 0.99316 0.97663 0.87821 1.20791 0.89418 0.81874 0.77946 1.90642 1.72135 1.35692 1.45483 1.50014 1.10808 1.18539 1.57283 1.24031 1.01565 0.82687 0.95189 1.20810 0.92182 0.96645 0.93103 1.20761 1.26673 0.98927 1.08644 0.90281 1.25000 0.95241 0.94653 0.97748 1.69893 1.41995 1.09348 1.31665 0.86912 0.81990 0.78528 0.82541 1.20260 1.21238 1.18156 1.23165 0.81360 0.96932 0.99696 0.92138 0.92165 0.92717 0.89820 0.91363 0.90375 0.90695 0.91240 0.89280 0.93757 0.93156 0.90048 0.90956 0.92377 0.92378 0.92175 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.32 37.16 0.35 -1.19 16 2 C -0.14 -1.80 4.41 -26.74 -0.12 -1.92 16 3 C 0.11 1.64 0.70 -91.77 -0.06 1.57 16 4 C -0.14 -1.78 8.34 37.16 0.31 -1.47 16 5 O -0.36 -5.69 7.98 -35.23 -0.28 -5.97 16 6 C 0.02 0.28 9.20 101.05 0.93 1.21 16 7 C 0.51 9.67 5.80 -10.98 -0.06 9.60 16 8 O -0.56 -12.00 16.76 5.56 0.09 -11.90 16 9 N -0.63 -12.40 3.00 -185.07 -0.55 -12.96 16 10 C 0.09 1.75 6.46 -8.38 -0.05 1.70 16 11 C -0.01 -0.17 2.98 -91.12 -0.27 -0.44 16 12 C -0.51 -13.27 9.37 -34.44 -0.32 -13.60 16 13 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 16 Si 0.87 19.88 27.15 -169.99 -4.61 15.26 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.26 -5.44 5.73 56.52 0.32 -5.12 16 20 C 0.11 2.23 8.17 -8.51 -0.07 2.16 16 21 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 22 H 0.06 0.57 6.34 -51.93 -0.33 0.24 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 25 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 26 H 0.08 0.86 6.35 -51.93 -0.33 0.53 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.55 6.31 -51.93 -0.33 0.23 16 31 H 0.05 0.83 6.37 -51.92 -0.33 0.50 16 32 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 33 H 0.07 1.42 4.89 -51.93 -0.25 1.17 16 34 H 0.06 1.27 7.03 -51.93 -0.37 0.91 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 LS Contribution 291.36 15.07 4.39 4.39 Total: -1.00 -29.56 291.36 -5.33 -34.89 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.66 Total: 1.67 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 0.52 Total: -0.41 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.22 Total: -37.93 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.19 Total: -17.88 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.61 Total: 15.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.56 -5.33 -34.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.529 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds