Wall clock time and date at job start Mon Mar 30 2020 04:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47482 * 305.00259 * 3 2 1 5 5 O 1.42906 * 109.46831 * 65.00545 * 3 2 1 6 6 C 1.42896 * 114.00468 * 59.99809 * 5 3 2 7 7 C 1.50706 * 109.47161 * 184.99873 * 3 2 1 8 8 O 1.21282 * 119.99717 * 25.00437 * 7 3 2 9 9 N 1.34777 * 120.00195 * 205.00101 * 7 3 2 10 10 C 1.47064 * 136.05452 * 359.63514 * 9 7 3 11 11 C 1.53753 * 87.88748 * 152.96166 * 10 9 7 12 12 C 1.50697 * 114.09014 * 139.77924 * 11 10 9 13 13 H 1.08006 * 119.99699 * 266.55862 * 12 11 10 14 14 C 1.37879 * 120.00198 * 86.55959 * 12 11 10 15 15 N 1.31516 * 119.99815 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99705 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47222 * 89.99995 * 16 14 12 18 18 H 1.48502 * 109.46870 * 210.00015 * 16 14 12 19 19 H 1.48492 * 109.47502 * 330.00073 * 16 14 12 20 20 C 1.47063 * 136.05966 * 180.02562 * 9 7 3 21 21 H 1.08998 * 109.47494 * 299.99463 * 1 2 3 22 22 H 1.08993 * 109.47314 * 59.99963 * 1 2 3 23 23 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46818 * 239.99963 * 2 1 3 25 25 H 1.08996 * 109.47235 * 120.00802 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 28 28 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47354 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.46939 * 300.00234 * 6 5 3 31 31 H 1.09007 * 109.47066 * 59.99469 * 6 5 3 32 32 H 1.08998 * 113.46882 * 267.69077 * 10 9 7 33 33 H 1.08995 * 113.46959 * 38.13399 * 10 9 7 34 34 H 1.09007 * 114.57212 * 272.66423 * 11 10 9 35 35 H 0.96998 * 119.99802 * 180.02562 * 15 14 12 36 36 H 1.09006 * 113.46419 * 321.86812 * 20 9 7 37 37 H 1.08994 * 113.46859 * 92.30122 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.4299 2.1991 -1.1815 5 8 1.6620 2.0812 1.2212 6 6 2.1824 1.4500 2.3927 7 6 3.5419 1.4442 -0.1238 8 8 4.1086 0.5064 -0.6436 9 7 4.2553 2.4881 0.3430 10 6 3.9528 3.7661 1.0048 11 6 5.3483 3.6989 1.6466 12 6 6.0655 5.0232 1.6995 13 1 6.7431 5.3023 0.9061 14 6 5.8567 5.8785 2.7606 15 7 6.4822 7.0344 2.8064 16 14 4.6852 5.3953 4.1330 17 1 5.4334 4.6669 5.1889 18 1 4.0724 6.6170 4.7137 19 1 3.6186 4.5179 3.5875 20 6 5.6783 2.8535 0.4084 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.3435 2.1978 -1.0920 27 1 1.7182 1.7118 -2.1129 28 1 1.7929 3.2270 -1.1812 29 1 1.8509 1.9947 3.2767 30 1 1.8220 0.4225 2.4423 31 1 3.2717 1.4514 2.3528 32 1 3.8343 4.5974 0.3099 33 1 3.1381 3.6994 1.7258 34 1 5.3887 3.1492 2.5871 35 1 6.3356 7.6360 3.5530 36 1 6.3339 2.0091 0.6213 37 1 6.0144 3.4444 -0.4436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:47 Heat of formation + Delta-G solvation = -64.646710 kcal Electronic energy + Delta-G solvation = -18625.117889 eV Core-core repulsion = 15789.374677 eV Total energy + Delta-G solvation = -2835.743212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84955 -39.69977 -38.45617 -34.80211 -34.62601 -31.76304 -30.50106 -27.71776 -27.25621 -26.69255 -26.02479 -22.76170 -21.10925 -20.05933 -19.17568 -18.40840 -17.53915 -17.00744 -16.60614 -16.46039 -15.98512 -15.26201 -15.08983 -14.67695 -14.45430 -14.25002 -13.72500 -13.54487 -13.41834 -13.32917 -12.94585 -12.76042 -12.66103 -12.64081 -12.46701 -12.13783 -11.86091 -11.83108 -11.54885 -11.22832 -11.09577 -10.70755 -10.26628 -9.67839 -8.27713 -6.35362 1.40625 1.42233 1.44108 1.54934 1.86893 2.39275 2.65773 3.03734 3.30720 3.69396 3.81757 4.00766 4.24652 4.28897 4.37932 4.37976 4.42186 4.52802 4.58845 4.62359 4.64767 4.71493 4.79174 4.86149 4.88481 4.92090 4.97144 5.07380 5.23981 5.34345 5.41513 5.59777 5.96585 6.27743 6.69911 6.78518 7.02956 7.32132 8.87721 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.007594 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.969544 B = 3686.073834 C = 4095.004342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.109 3.891 4 C -0.136 4.136 5 O -0.368 6.368 6 C 0.014 3.986 7 C 0.508 3.492 8 O -0.587 6.587 9 N -0.634 5.634 10 C 0.104 3.896 11 C -0.012 4.012 12 C -0.513 4.513 13 H 0.040 0.960 14 C 0.021 3.979 15 N -0.943 5.943 16 Si 0.937 3.063 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.228 1.228 20 C 0.110 3.890 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.268 0.732 36 H 0.064 0.936 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 -11.355 -2.145 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.066 3.934 4 C -0.193 4.193 5 O -0.287 6.287 6 C -0.082 4.082 7 C 0.298 3.702 8 O -0.469 6.469 9 N -0.366 5.366 10 C -0.018 4.018 11 C -0.031 4.031 12 C -0.551 4.551 13 H 0.059 0.941 14 C -0.178 4.178 15 N -0.582 5.582 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.151 1.151 20 C -0.013 4.013 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.234 -11.692 -2.399 18.576 hybrid contribution 0.587 0.161 0.564 0.830 sum -13.647 -11.531 -1.835 17.960 Atomic orbital electron populations 1.21747 0.92227 1.02780 1.03079 1.21916 0.98696 0.93147 1.03356 1.21870 0.87186 0.96138 0.88168 1.21833 1.03342 0.99848 0.94235 1.87974 1.73398 1.54070 1.13272 1.23032 0.97931 0.99236 0.88001 1.21639 0.91058 0.80747 0.76748 1.90625 1.73147 1.36511 1.46623 1.49993 1.10218 1.18736 1.57676 1.23729 1.00217 0.82842 0.95056 1.20723 0.93385 0.94839 0.94172 1.20910 1.26098 1.00680 1.07459 0.94136 1.25860 0.97053 0.94358 1.00479 1.70040 1.44318 1.10943 1.32904 0.85894 0.80409 0.78540 0.79127 1.19802 1.21432 1.15105 1.23055 0.82451 0.96861 0.98899 0.92100 0.91049 0.91109 0.90585 0.91824 0.87752 0.90096 0.92252 0.87625 0.91850 0.95432 0.90378 0.89784 0.91643 0.92328 0.91748 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.32 71.98 0.67 -1.73 16 2 C -0.13 -3.15 4.41 30.59 0.14 -3.01 16 3 C 0.11 3.05 0.70 -11.54 -0.01 3.04 16 4 C -0.14 -3.17 8.34 71.98 0.60 -2.57 16 5 O -0.37 -10.35 7.98 -148.98 -1.19 -11.54 16 6 C 0.01 0.36 9.20 113.37 1.04 1.41 16 7 C 0.51 18.46 5.80 87.66 0.51 18.96 16 8 O -0.59 -24.65 16.76 -3.03 -0.05 -24.70 16 9 N -0.63 -24.05 3.00 -857.83 -2.57 -26.62 16 10 C 0.10 3.99 6.46 83.26 0.54 4.53 16 11 C -0.01 -0.50 2.98 -11.11 -0.03 -0.54 16 12 C -0.51 -27.08 9.37 25.60 0.24 -26.84 16 13 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 14 C 0.02 1.14 5.47 84.65 0.46 1.60 16 15 N -0.94 -55.74 13.96 21.45 0.30 -55.44 16 16 Si 0.94 40.19 27.15 68.60 1.86 42.05 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.23 -8.61 5.73 99.48 0.57 -8.04 16 20 C 0.11 4.42 8.17 83.18 0.68 5.10 16 21 H 0.06 1.06 7.82 -2.39 -0.02 1.04 16 22 H 0.07 1.06 6.34 -2.39 -0.02 1.05 16 23 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.08 1.92 7.68 -2.39 -0.02 1.90 16 25 H 0.06 1.55 6.29 -2.39 -0.02 1.53 16 26 H 0.10 1.90 6.35 -2.39 -0.02 1.88 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 1.38 6.31 -2.39 -0.02 1.37 16 31 H 0.03 0.83 6.37 -2.38 -0.02 0.82 16 32 H 0.08 3.06 8.10 -2.39 -0.02 3.04 16 33 H 0.08 3.05 4.89 -2.39 -0.01 3.04 16 34 H 0.07 2.75 7.03 -2.38 -0.02 2.73 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 37 H 0.08 3.13 8.10 -2.39 -0.02 3.11 16 Total: -1.00 -63.92 291.36 4.10 -59.82 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.91 Total: 16.48 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.84 Total: -0.05 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.27 Total: -82.06 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.24 Total: -36.23 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.86 Total: 42.05 kcal Total: -63.92 4.10 -59.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.830 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds