Wall clock time and date at job start Mon Mar 30 2020 03:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.52999 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 305.00469 * 4 3 2 6 6 O 1.42905 * 109.46728 * 65.00521 * 4 3 2 7 7 C 1.50697 * 109.46961 * 185.00027 * 4 3 2 8 8 O 1.21281 * 120.00351 * 25.00548 * 7 4 3 9 9 N 1.34780 * 119.99926 * 205.00360 * 7 4 3 10 10 C 1.47070 * 136.05531 * 359.62895 * 9 7 4 11 11 C 1.53762 * 87.88448 * 152.96579 * 10 9 7 12 12 C 1.50698 * 114.26322 * 139.79460 * 11 10 9 13 13 H 1.08007 * 119.99814 * 266.46967 * 12 11 10 14 14 C 1.37872 * 120.00506 * 86.47911 * 12 11 10 15 15 N 1.31524 * 119.99580 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00433 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 59.99340 * 16 14 12 18 18 H 1.48500 * 109.47434 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47204 * 299.99472 * 16 14 12 20 20 C 1.47070 * 136.05946 * 180.02562 * 9 7 4 21 21 H 1.08994 * 109.47265 * 59.99943 * 1 2 3 22 22 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47089 * 299.99764 * 1 2 3 24 24 H 1.09000 * 109.47089 * 240.00236 * 2 1 3 25 25 H 1.08994 * 109.47265 * 120.00057 * 2 1 3 26 26 H 1.09000 * 109.47048 * 60.00211 * 3 2 1 27 27 H 1.08994 * 109.47199 * 300.00098 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 5 4 3 31 31 H 0.96696 * 113.99968 * 59.99451 * 6 4 3 32 32 H 1.09000 * 113.46925 * 267.69580 * 10 9 7 33 33 H 1.09000 * 113.46443 * 38.13865 * 10 9 7 34 34 H 1.08999 * 114.39076 * 272.67799 * 11 10 9 35 35 H 0.96997 * 119.99754 * 180.02562 * 15 14 12 36 36 H 1.09004 * 113.46359 * 321.86301 * 20 9 7 37 37 H 1.08997 * 113.46803 * 92.24157 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0795 0.6153 1.1825 6 8 4.0468 0.8731 -1.2202 7 6 4.0722 2.8580 0.1245 8 8 3.3766 3.7050 0.6438 9 7 5.2943 3.1826 -0.3419 10 6 6.3987 2.4713 -1.0031 11 6 6.8007 3.8095 -1.6450 12 6 8.2877 4.0482 -1.6996 13 1 8.7759 4.5967 -0.9076 14 6 9.0248 3.5666 -2.7605 15 7 8.4302 2.8984 -3.7248 16 14 10.8678 3.8631 -2.8285 17 1 11.5117 3.2526 -1.6378 18 1 11.4230 3.2481 -4.0609 19 1 11.1340 5.3240 -2.8407 20 6 6.1132 4.4025 -0.4072 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.7159 1.0497 2.1137 29 1 5.1695 0.6150 1.1826 30 1 3.7162 -0.4085 1.0929 31 1 3.7616 1.3474 -2.0132 32 1 7.1428 2.0826 -0.3078 33 1 6.0645 1.7254 -1.7242 34 1 6.2944 4.0277 -2.5853 35 1 8.9488 2.5592 -4.4710 36 1 5.5357 5.3020 -0.6205 37 1 6.7812 4.5231 0.4456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:16 Heat of formation + Delta-G solvation = -66.604439 kcal Electronic energy + Delta-G solvation = -17971.541333 eV Core-core repulsion = 15135.713228 eV Total energy + Delta-G solvation = -2835.828105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00159 -37.89867 -36.53261 -34.19461 -32.65922 -30.94555 -29.07691 -26.73941 -25.43506 -24.89311 -23.29696 -20.92798 -19.91279 -18.63161 -17.11323 -16.50486 -15.71894 -15.52842 -15.29646 -14.78713 -14.45866 -13.96060 -13.42600 -13.03918 -12.78422 -12.35371 -12.34158 -12.13407 -11.84459 -11.74691 -11.65941 -11.39494 -11.19183 -10.98387 -10.86110 -10.80435 -10.60092 -10.40135 -10.22647 -9.46595 -9.17885 -8.77386 -8.52265 -7.86432 -6.17108 -4.22547 3.03598 3.25958 3.31456 3.33080 3.50960 4.32090 4.35170 4.76553 4.83975 4.95283 5.12052 5.17594 5.24438 5.46851 5.63756 5.75091 5.84390 5.86567 5.90237 6.03810 6.05727 6.12235 6.19657 6.26075 6.32616 6.36132 6.44042 6.64466 6.73203 6.92709 7.55296 7.69148 7.80247 8.19403 8.49753 8.72547 8.80529 9.43926 10.92594 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043675 B = 0.005367 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.946712 B = 5215.694566 C = 5498.706065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.126 3.874 5 C -0.136 4.136 6 O -0.543 6.543 7 C 0.504 3.496 8 O -0.566 6.566 9 N -0.632 5.632 10 C 0.103 3.897 11 C 0.034 3.966 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.885 5.885 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.095 3.905 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.380 0.620 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 -5.914 5.196 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.083 3.917 5 C -0.193 4.193 6 O -0.349 6.349 7 C 0.292 3.708 8 O -0.446 6.446 9 N -0.364 5.364 10 C -0.019 4.019 11 C 0.014 3.986 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.027 4.027 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.800 -6.057 5.769 12.884 hybrid contribution 0.792 0.509 -0.409 1.027 sum -9.007 -5.548 5.360 11.860 Atomic orbital electron populations 1.21775 0.96043 1.01323 1.01760 1.21545 0.95389 0.96293 1.02705 1.22072 0.93427 0.97542 1.03816 1.21321 0.93535 0.89495 0.87383 1.21745 1.02384 1.00078 0.95103 1.86568 1.76828 1.56563 1.14939 1.20968 0.81092 0.90546 0.78228 1.90631 1.57073 1.51097 1.45844 1.50057 1.13483 1.15961 1.56906 1.23689 0.84005 0.99919 0.94313 1.20403 0.95902 0.90114 0.92132 1.20866 0.91259 1.36353 1.07234 0.91987 1.25012 0.98779 0.94517 0.95114 1.69942 1.36151 1.35808 1.10237 0.86602 0.84968 0.78637 0.77500 1.20083 1.21200 1.20081 1.23409 0.90735 0.88021 1.00512 0.92854 0.92872 0.92852 0.91276 0.91660 0.90037 0.91568 0.90990 0.91437 0.90589 0.77196 0.91295 0.90731 0.91468 0.92586 0.92628 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.34 5.34 -26.73 -0.14 -1.48 16 3 C -0.13 -1.75 4.12 -26.73 -0.11 -1.86 16 4 C 0.13 1.96 0.96 -91.78 -0.09 1.87 16 5 C -0.14 -1.88 8.34 37.16 0.31 -1.57 16 6 O -0.54 -8.38 10.15 -35.23 -0.36 -8.74 16 7 C 0.50 9.84 6.94 -10.99 -0.08 9.76 16 8 O -0.57 -12.55 16.76 5.56 0.09 -12.45 16 9 N -0.63 -12.95 3.65 -185.03 -0.68 -13.63 16 10 C 0.10 2.19 7.46 -8.36 -0.06 2.13 16 11 C 0.03 0.79 3.79 -91.11 -0.35 0.45 16 12 C -0.52 -13.27 8.83 -34.44 -0.30 -13.58 16 13 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.88 -24.04 13.26 55.43 0.74 -23.31 16 16 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.10 2.02 8.17 -8.49 -0.07 1.95 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 25 H 0.06 0.68 6.34 -51.93 -0.33 0.35 16 26 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 31 H 0.38 5.18 9.04 45.56 0.41 5.60 16 32 H 0.07 1.49 8.10 -51.93 -0.42 1.06 16 33 H 0.07 1.60 6.61 -51.93 -0.34 1.25 16 34 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -28.72 305.27 -6.41 -35.13 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.16 Total: 5.01 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.62 Total: -1.69 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.06 Total: -36.94 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.26 Total: -21.20 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.72 -6.41 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.476 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds