Wall clock time and date at job start Mon Mar 30 2020 03:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.52999 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 305.00469 * 4 3 2 6 6 O 1.42905 * 109.46728 * 65.00521 * 4 3 2 7 7 C 1.50697 * 109.46961 * 185.00027 * 4 3 2 8 8 O 1.21281 * 120.00351 * 25.00548 * 7 4 3 9 9 N 1.34780 * 119.99926 * 205.00360 * 7 4 3 10 10 C 1.47070 * 136.05531 * 359.62895 * 9 7 4 11 11 C 1.53762 * 87.88448 * 152.96579 * 10 9 7 12 12 C 1.50698 * 114.26322 * 139.79460 * 11 10 9 13 13 H 1.08007 * 119.99814 * 266.46967 * 12 11 10 14 14 C 1.37872 * 120.00506 * 86.47911 * 12 11 10 15 15 N 1.31524 * 119.99580 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00433 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 59.99340 * 16 14 12 18 18 H 1.48500 * 109.47434 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47204 * 299.99472 * 16 14 12 20 20 C 1.47070 * 136.05946 * 180.02562 * 9 7 4 21 21 H 1.08994 * 109.47265 * 59.99943 * 1 2 3 22 22 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47089 * 299.99764 * 1 2 3 24 24 H 1.09000 * 109.47089 * 240.00236 * 2 1 3 25 25 H 1.08994 * 109.47265 * 120.00057 * 2 1 3 26 26 H 1.09000 * 109.47048 * 60.00211 * 3 2 1 27 27 H 1.08994 * 109.47199 * 300.00098 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 5 4 3 31 31 H 0.96696 * 113.99968 * 59.99451 * 6 4 3 32 32 H 1.09000 * 113.46925 * 267.69580 * 10 9 7 33 33 H 1.09000 * 113.46443 * 38.13865 * 10 9 7 34 34 H 1.08999 * 114.39076 * 272.67799 * 11 10 9 35 35 H 0.96997 * 119.99754 * 180.02562 * 15 14 12 36 36 H 1.09004 * 113.46359 * 321.86301 * 20 9 7 37 37 H 1.08997 * 113.46803 * 92.24157 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0795 0.6153 1.1825 6 8 4.0468 0.8731 -1.2202 7 6 4.0722 2.8580 0.1245 8 8 3.3766 3.7050 0.6438 9 7 5.2943 3.1826 -0.3419 10 6 6.3987 2.4713 -1.0031 11 6 6.8007 3.8095 -1.6450 12 6 8.2877 4.0482 -1.6996 13 1 8.7759 4.5967 -0.9076 14 6 9.0248 3.5666 -2.7605 15 7 8.4302 2.8984 -3.7248 16 14 10.8678 3.8631 -2.8285 17 1 11.5117 3.2526 -1.6378 18 1 11.4230 3.2481 -4.0609 19 1 11.1340 5.3240 -2.8407 20 6 6.1132 4.4025 -0.4072 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.7159 1.0497 2.1137 29 1 5.1695 0.6150 1.1826 30 1 3.7162 -0.4085 1.0929 31 1 3.7616 1.3474 -2.0132 32 1 7.1428 2.0826 -0.3078 33 1 6.0645 1.7254 -1.7242 34 1 6.2944 4.0277 -2.5853 35 1 8.9488 2.5592 -4.4710 36 1 5.5357 5.3020 -0.6205 37 1 6.7812 4.5231 0.4456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:16 Heat of formation + Delta-G solvation = -85.475173 kcal Electronic energy + Delta-G solvation = -17972.359630 eV Core-core repulsion = 15135.713228 eV Total energy + Delta-G solvation = -2836.646402 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.54344 -39.43999 -38.04817 -35.22500 -34.60667 -32.11876 -30.77062 -27.76165 -27.25789 -26.65239 -24.56132 -22.30384 -21.27320 -20.16689 -18.86174 -18.21455 -17.26403 -16.79273 -16.66737 -16.38327 -16.04446 -15.38188 -14.56774 -14.38465 -14.27925 -14.05220 -13.46048 -13.34880 -13.30128 -13.14230 -12.98432 -12.76670 -12.70285 -12.61405 -12.51160 -12.18606 -11.90653 -11.59449 -11.40467 -11.29574 -11.01542 -10.58243 -10.25567 -9.58805 -8.15488 -6.26611 1.46758 1.49438 1.49928 1.57510 1.94941 2.46945 3.12211 3.15902 3.37770 3.71985 3.85952 4.19417 4.25842 4.30908 4.40311 4.49278 4.55853 4.67121 4.68840 4.75689 4.77050 4.87150 4.92490 4.98914 5.04503 5.07818 5.15385 5.26072 5.36674 5.47879 5.59171 5.81948 6.24257 6.49612 6.80840 6.86365 7.11055 7.43086 8.94141 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043675 B = 0.005367 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.946712 B = 5215.694566 C = 5498.706065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.124 4.124 4 C 0.132 3.868 5 C -0.135 4.135 6 O -0.547 6.547 7 C 0.499 3.501 8 O -0.593 6.593 9 N -0.633 5.633 10 C 0.121 3.879 11 C 0.023 3.977 12 C -0.533 4.533 13 H 0.064 0.936 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.099 3.901 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.386 0.614 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.055 0.945 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 -6.908 5.900 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.162 4.162 4 C 0.088 3.912 5 C -0.192 4.192 6 O -0.354 6.354 7 C 0.289 3.711 8 O -0.475 6.475 9 N -0.365 5.365 10 C -0.001 4.001 11 C 0.004 3.996 12 C -0.571 4.571 13 H 0.082 0.918 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.023 4.023 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.236 0.764 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.923 -7.051 6.481 13.791 hybrid contribution 0.777 0.865 -0.627 1.321 sum -9.146 -6.186 5.854 12.497 Atomic orbital electron populations 1.21765 0.94847 1.02334 1.01825 1.21515 0.96389 0.94289 1.03115 1.22041 0.91644 0.99321 1.03219 1.21400 0.94783 0.86923 0.88064 1.21798 1.01636 1.01195 0.94571 1.86561 1.77122 1.56459 1.15263 1.21861 0.80094 0.92109 0.77033 1.90612 1.57487 1.52449 1.46956 1.50062 1.13861 1.15306 1.57305 1.23358 0.84146 0.98629 0.93951 1.20286 0.95145 0.92195 0.91963 1.21179 0.92328 1.36173 1.07376 0.91753 1.25733 1.02836 0.94329 0.94804 1.70047 1.37620 1.36871 1.10808 0.85623 0.80039 0.78549 0.77527 1.19351 1.21153 1.19685 1.23292 0.90907 0.88426 0.99711 0.92977 0.91394 0.92676 0.91363 0.90683 0.90866 0.91989 0.90225 0.92636 0.88168 0.76444 0.91281 0.90876 0.94078 0.92624 0.92627 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.12 -2.26 5.34 30.60 0.16 -2.09 16 3 C -0.12 -3.14 4.12 30.59 0.13 -3.01 16 4 C 0.13 3.91 0.96 -11.54 -0.01 3.90 16 5 C -0.13 -3.46 8.34 71.98 0.60 -2.86 16 6 O -0.55 -16.22 10.15 -148.98 -1.51 -17.73 16 7 C 0.50 19.20 6.94 87.66 0.61 19.81 16 8 O -0.59 -26.07 16.76 -3.03 -0.05 -26.12 16 9 N -0.63 -25.79 3.65 -857.68 -3.13 -28.92 16 10 C 0.12 5.17 7.46 83.27 0.62 5.79 16 11 C 0.02 1.11 3.79 -11.11 -0.04 1.07 16 12 C -0.53 -27.22 8.83 25.60 0.23 -27.00 16 13 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 14 C 0.02 1.22 5.46 84.65 0.46 1.68 16 15 N -0.92 -50.03 13.26 21.45 0.28 -49.74 16 16 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 C 0.10 4.20 8.17 83.19 0.68 4.88 16 21 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 1.37 7.82 -2.39 -0.02 1.35 16 25 H 0.07 1.33 6.34 -2.39 -0.02 1.31 16 26 H 0.07 1.99 7.68 -2.39 -0.02 1.97 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 2.09 6.34 -2.38 -0.02 2.07 16 31 H 0.39 10.25 9.04 -74.06 -0.67 9.58 16 32 H 0.07 2.94 8.10 -2.39 -0.02 2.92 16 33 H 0.07 3.12 6.61 -2.39 -0.02 3.11 16 34 H 0.04 2.15 8.11 -2.39 -0.02 2.14 16 35 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 3.28 8.10 -2.39 -0.02 3.27 16 Total: -1.00 -59.90 305.27 2.15 -57.76 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.38 Total: 21.49 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.15 Total: 0.38 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.85 Total: -78.67 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.56 Total: -43.85 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -59.90 2.15 -57.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.719 kcal (2) G-P(sol) polarization free energy of solvation -59.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds