Wall clock time and date at job start Mon Mar 30 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 C 1.52992 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 60.00162 * 4 3 2 6 6 O 1.42905 * 109.46980 * 299.99855 * 4 3 2 7 7 C 1.50699 * 109.46956 * 180.02562 * 4 3 2 8 8 O 1.21281 * 120.00449 * 334.99773 * 7 4 3 9 9 N 1.34782 * 119.99888 * 154.99757 * 7 4 3 10 10 C 1.47058 * 136.06005 * 359.62939 * 9 7 4 11 11 C 1.53756 * 87.89099 * 152.96408 * 10 9 7 12 12 C 1.50691 * 114.09036 * 139.78041 * 11 10 9 13 13 H 1.08003 * 120.00185 * 266.56610 * 12 11 10 14 14 C 1.37882 * 120.00024 * 86.56216 * 12 11 10 15 15 N 1.31518 * 119.99786 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47152 * 90.00207 * 16 14 12 18 18 H 1.48495 * 109.47256 * 209.99969 * 16 14 12 19 19 H 1.48497 * 109.47232 * 330.00108 * 16 14 12 20 20 C 1.47074 * 136.05309 * 179.97438 * 9 7 4 21 21 H 1.08992 * 109.47399 * 59.99834 * 1 2 3 22 22 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46724 * 299.99348 * 1 2 3 24 24 H 1.09000 * 109.46968 * 240.00192 * 2 1 3 25 25 H 1.09002 * 109.47131 * 120.00654 * 2 1 3 26 26 H 1.08996 * 109.46550 * 60.00034 * 3 2 1 27 27 H 1.09002 * 109.47070 * 300.00374 * 3 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 5 4 3 31 31 H 0.96696 * 113.99968 * 299.99977 * 6 4 3 32 32 H 1.09000 * 113.46735 * 267.69330 * 10 9 7 33 33 H 1.08998 * 113.46918 * 38.13214 * 10 9 7 34 34 H 1.09001 * 114.57213 * 272.66448 * 11 10 9 35 35 H 0.97005 * 119.99690 * 180.02562 * 15 14 12 36 36 H 1.08991 * 113.47186 * 321.86842 * 20 9 7 37 37 H 1.09005 * 113.46045 * 92.31005 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7215 -1.2502 6 8 4.0468 0.7687 1.1659 7 6 4.0723 2.8633 0.0000 8 8 3.3768 3.7526 -0.4431 9 7 5.2945 3.1457 0.4930 10 6 6.3935 2.3811 1.1013 11 6 7.3570 3.4599 0.5797 12 6 8.4511 3.8278 1.5484 13 1 8.3175 4.6605 2.2231 14 6 9.6228 3.1014 1.5734 15 7 10.5774 3.4222 2.4193 16 14 9.8536 1.6607 0.4071 17 1 10.4693 2.1404 -0.8564 18 1 10.7407 0.6505 1.0376 19 1 8.5343 1.0460 0.1125 20 6 6.1134 4.3552 0.6649 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.7158 1.2354 -2.1400 29 1 3.7161 -0.3062 -1.2502 30 1 5.1695 0.7219 -1.2508 31 1 3.7618 1.1721 1.9972 32 1 6.3407 2.3357 2.1891 33 1 6.5465 1.4031 0.6451 34 1 7.7183 3.2926 -0.4350 35 1 11.4019 2.9114 2.4366 36 1 6.0276 5.0588 -0.1631 37 1 5.9866 4.8306 1.6376 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:18 Heat of formation + Delta-G solvation = -63.739398 kcal Electronic energy + Delta-G solvation = -18062.023889 eV Core-core repulsion = 15226.320021 eV Total energy + Delta-G solvation = -2835.703868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.17192 -38.12691 -36.68603 -34.27811 -32.63347 -31.09446 -29.52668 -26.84121 -25.70948 -25.05887 -23.29692 -20.92258 -19.89960 -18.75351 -17.32584 -16.99098 -15.87245 -15.68345 -15.44342 -14.91205 -14.37184 -13.73635 -13.56061 -13.22759 -13.11030 -12.64220 -12.44935 -12.27792 -11.99222 -11.87778 -11.81012 -11.62093 -11.55026 -11.05170 -10.82712 -10.70683 -10.68788 -10.39658 -10.08113 -9.72505 -9.33013 -8.95282 -8.63576 -8.06528 -6.21197 -4.23835 2.90355 3.22118 3.29292 3.31824 3.35519 4.19028 4.31570 4.61767 4.71705 4.85216 5.02740 5.08741 5.13862 5.37320 5.55802 5.65316 5.74537 5.75806 5.77596 5.84342 5.93718 5.96453 6.02370 6.08366 6.23317 6.25987 6.27304 6.40830 6.49208 6.51965 7.14093 7.52361 7.54783 8.28907 8.36779 8.56150 8.81853 9.40038 10.90789 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037751 B = 0.006119 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.514562 B = 4574.652920 C = 4915.821510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.129 4.129 4 C 0.126 3.874 5 C -0.137 4.137 6 O -0.544 6.544 7 C 0.505 3.495 8 O -0.560 6.560 9 N -0.633 5.633 10 C 0.097 3.903 11 C -0.010 4.010 12 C -0.513 4.513 13 H 0.079 0.921 14 C 0.078 3.922 15 N -0.893 5.893 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.259 1.259 20 C 0.110 3.890 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.378 0.622 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -7.605 -4.153 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.167 4.167 4 C 0.082 3.918 5 C -0.195 4.195 6 O -0.349 6.349 7 C 0.294 3.706 8 O -0.440 6.440 9 N -0.366 5.366 10 C -0.025 4.025 11 C -0.030 4.030 12 C -0.551 4.551 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.701 3.299 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.183 1.183 20 C -0.012 4.012 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.225 0.775 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.375 -7.627 -4.841 16.977 hybrid contribution 0.016 -0.357 -0.032 0.359 sum -14.359 -7.984 -4.873 17.137 Atomic orbital electron populations 1.21774 0.95964 1.01393 1.01783 1.21521 0.95417 0.96158 1.02769 1.22056 0.93178 0.97610 1.03861 1.21343 0.93661 0.88441 0.88385 1.21761 1.02505 1.00891 0.94318 1.86580 1.76952 1.56045 1.15317 1.20959 0.79642 0.91236 0.78802 1.90650 1.55807 1.48664 1.48887 1.49997 1.14261 1.14479 1.57902 1.23898 0.82677 0.97572 0.98382 1.20833 0.92188 0.92145 0.97802 1.20761 0.98164 1.16877 1.19306 0.90280 1.24997 0.95420 0.97074 0.95101 1.69896 1.06459 1.40314 1.36242 0.86898 0.78939 0.82682 0.81335 1.20211 1.21226 1.18303 1.23155 0.88214 0.89175 1.00619 0.92805 0.92818 0.92860 0.91668 0.91280 0.91570 0.90033 0.90786 0.90612 0.91344 0.77505 0.89855 0.91820 0.92287 0.92361 0.92129 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.23 5.44 -26.73 -0.15 -1.37 16 3 C -0.13 -1.60 3.99 -26.73 -0.11 -1.70 16 4 C 0.13 1.81 0.96 -91.78 -0.09 1.72 16 5 C -0.14 -1.84 8.47 37.16 0.31 -1.52 16 6 O -0.54 -7.52 10.69 -35.23 -0.38 -7.90 16 7 C 0.51 9.29 6.94 -10.98 -0.08 9.21 16 8 O -0.56 -11.82 16.87 5.56 0.09 -11.73 16 9 N -0.63 -12.17 3.65 -185.06 -0.68 -12.84 16 10 C 0.10 1.91 6.17 -8.37 -0.05 1.86 16 11 C -0.01 -0.22 2.97 -91.14 -0.27 -0.49 16 12 C -0.51 -13.31 9.37 -34.44 -0.32 -13.63 16 13 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 14 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 16 Si 0.87 20.08 27.15 -169.99 -4.61 15.46 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.26 -5.59 5.72 56.52 0.32 -5.26 16 20 C 0.11 2.21 8.17 -8.51 -0.07 2.14 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 25 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.38 4.30 9.04 45.56 0.41 4.71 16 32 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 33 H 0.06 1.25 7.04 -51.93 -0.37 0.88 16 34 H 0.06 1.31 7.03 -51.93 -0.37 0.94 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -29.87 301.20 -6.04 -35.91 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.23 Total: 4.31 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.55 Total: -2.77 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.10 Total: -37.83 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.28 Total: -19.63 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.61 Total: 15.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.87 -6.04 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.828 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds