Wall clock time and date at job start Mon Mar 30 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 C 1.52992 * 109.47106 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 60.00162 * 4 3 2 6 6 O 1.42905 * 109.46980 * 299.99855 * 4 3 2 7 7 C 1.50699 * 109.46956 * 180.02562 * 4 3 2 8 8 O 1.21281 * 120.00449 * 334.99773 * 7 4 3 9 9 N 1.34782 * 119.99888 * 154.99757 * 7 4 3 10 10 C 1.47058 * 136.06005 * 359.62939 * 9 7 4 11 11 C 1.53756 * 87.89099 * 152.96408 * 10 9 7 12 12 C 1.50691 * 114.09036 * 139.78041 * 11 10 9 13 13 H 1.08003 * 120.00185 * 266.56610 * 12 11 10 14 14 C 1.37882 * 120.00024 * 86.56216 * 12 11 10 15 15 N 1.31518 * 119.99786 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47152 * 90.00207 * 16 14 12 18 18 H 1.48495 * 109.47256 * 209.99969 * 16 14 12 19 19 H 1.48497 * 109.47232 * 330.00108 * 16 14 12 20 20 C 1.47074 * 136.05309 * 179.97438 * 9 7 4 21 21 H 1.08992 * 109.47399 * 59.99834 * 1 2 3 22 22 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46724 * 299.99348 * 1 2 3 24 24 H 1.09000 * 109.46968 * 240.00192 * 2 1 3 25 25 H 1.09002 * 109.47131 * 120.00654 * 2 1 3 26 26 H 1.08996 * 109.46550 * 60.00034 * 3 2 1 27 27 H 1.09002 * 109.47070 * 300.00374 * 3 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 5 4 3 31 31 H 0.96696 * 113.99968 * 299.99977 * 6 4 3 32 32 H 1.09000 * 113.46735 * 267.69330 * 10 9 7 33 33 H 1.08998 * 113.46918 * 38.13214 * 10 9 7 34 34 H 1.09001 * 114.57213 * 272.66448 * 11 10 9 35 35 H 0.97005 * 119.99690 * 180.02562 * 15 14 12 36 36 H 1.08991 * 113.47186 * 321.86842 * 20 9 7 37 37 H 1.09005 * 113.46045 * 92.31005 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7215 -1.2502 6 8 4.0468 0.7687 1.1659 7 6 4.0723 2.8633 0.0000 8 8 3.3768 3.7526 -0.4431 9 7 5.2945 3.1457 0.4930 10 6 6.3935 2.3811 1.1013 11 6 7.3570 3.4599 0.5797 12 6 8.4511 3.8278 1.5484 13 1 8.3175 4.6605 2.2231 14 6 9.6228 3.1014 1.5734 15 7 10.5774 3.4222 2.4193 16 14 9.8536 1.6607 0.4071 17 1 10.4693 2.1404 -0.8564 18 1 10.7407 0.6505 1.0376 19 1 8.5343 1.0460 0.1125 20 6 6.1134 4.3552 0.6649 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.7158 1.2354 -2.1400 29 1 3.7161 -0.3062 -1.2502 30 1 5.1695 0.7219 -1.2508 31 1 3.7618 1.1721 1.9972 32 1 6.3407 2.3357 2.1891 33 1 6.5465 1.4031 0.6451 34 1 7.7183 3.2926 -0.4350 35 1 11.4019 2.9114 2.4366 36 1 6.0276 5.0588 -0.1631 37 1 5.9866 4.8306 1.6376 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:18 Heat of formation + Delta-G solvation = -84.817295 kcal Electronic energy + Delta-G solvation = -18062.937895 eV Core-core repulsion = 15226.320021 eV Total energy + Delta-G solvation = -2836.617874 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61185 -39.55693 -38.07592 -35.19534 -34.63868 -32.18901 -31.16027 -27.77451 -27.45301 -26.72830 -24.46550 -22.15513 -21.25214 -20.18474 -19.18714 -18.49563 -17.28224 -16.95713 -16.59803 -16.37992 -15.85889 -15.27320 -14.89559 -14.63529 -14.32945 -14.19668 -13.51721 -13.44572 -13.37036 -13.29734 -13.05300 -12.72556 -12.65996 -12.58146 -12.49901 -11.92106 -11.83797 -11.63588 -11.50346 -11.38722 -11.21179 -10.71145 -10.35076 -9.66517 -8.27829 -6.35153 1.41662 1.44021 1.45885 1.54765 1.87003 2.38985 3.03625 3.13903 3.31649 3.69990 3.85137 4.01528 4.20773 4.26994 4.29318 4.42902 4.53116 4.61345 4.66390 4.73332 4.75356 4.80438 4.87658 4.92152 4.92823 5.02184 5.08210 5.26195 5.35395 5.37173 5.48259 5.60566 6.27903 6.51354 6.70496 6.80641 7.06747 7.32511 8.87643 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037751 B = 0.006119 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.514562 B = 4574.652920 C = 4915.821510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.123 4.123 4 C 0.133 3.867 5 C -0.138 4.138 6 O -0.546 6.546 7 C 0.502 3.498 8 O -0.589 6.589 9 N -0.634 5.634 10 C 0.115 3.885 11 C -0.018 4.018 12 C -0.513 4.513 13 H 0.042 0.958 14 C 0.023 3.977 15 N -0.943 5.943 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.233 1.233 20 C 0.110 3.890 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.388 0.612 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.268 0.732 36 H 0.063 0.937 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.799 -9.799 -5.263 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.161 4.161 4 C 0.089 3.911 5 C -0.195 4.195 6 O -0.353 6.353 7 C 0.292 3.708 8 O -0.470 6.470 9 N -0.366 5.366 10 C -0.008 4.008 11 C -0.037 4.037 12 C -0.551 4.551 13 H 0.060 0.940 14 C -0.176 4.176 15 N -0.582 5.582 16 Si 0.761 3.239 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.156 1.156 20 C -0.012 4.012 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.932 -9.823 -5.949 19.639 hybrid contribution 0.450 0.448 0.359 0.730 sum -15.482 -9.375 -5.589 18.942 Atomic orbital electron populations 1.21768 0.94958 1.02279 1.01829 1.21489 0.96250 0.94321 1.03166 1.22024 0.91539 0.99216 1.03309 1.21358 0.94762 0.85728 0.89233 1.21817 1.01692 1.02213 0.93806 1.86568 1.77153 1.55804 1.15729 1.21842 0.78719 0.92806 0.77404 1.90636 1.56388 1.50112 1.49907 1.49972 1.14780 1.13636 1.58240 1.23588 0.81710 0.96950 0.98506 1.20767 0.91779 0.94247 0.96953 1.20920 0.99537 1.15568 1.19122 0.93971 1.25824 0.95015 1.00013 0.96710 1.70037 1.07325 1.42201 1.38631 0.85891 0.79954 0.79170 0.78879 1.19920 1.21343 1.15574 1.23038 0.87793 0.89592 1.00802 0.92764 0.91519 0.92892 0.90948 0.91129 0.91866 0.90938 0.90331 0.88236 0.92598 0.76273 0.89634 0.90803 0.91885 0.92306 0.91862 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.11 -1.97 5.44 30.60 0.17 -1.80 16 3 C -0.12 -2.75 3.99 30.59 0.12 -2.63 16 4 C 0.13 3.50 0.96 -11.54 -0.01 3.49 16 5 C -0.14 -3.27 8.47 71.98 0.61 -2.66 16 6 O -0.55 -13.46 10.69 -148.98 -1.59 -15.05 16 7 C 0.50 17.58 6.94 87.66 0.61 18.19 16 8 O -0.59 -24.18 16.87 -3.03 -0.05 -24.24 16 9 N -0.63 -23.31 3.65 -857.81 -3.13 -26.45 16 10 C 0.11 4.28 6.17 83.27 0.51 4.79 16 11 C -0.02 -0.77 2.97 -11.13 -0.03 -0.80 16 12 C -0.51 -26.96 9.37 25.60 0.24 -26.72 16 13 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 14 C 0.02 1.25 5.47 84.66 0.46 1.71 16 15 N -0.94 -55.61 13.96 21.45 0.30 -55.31 16 16 Si 0.94 40.61 27.15 68.60 1.86 42.48 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.23 -9.01 5.72 99.48 0.57 -8.44 16 20 C 0.11 4.36 8.17 83.17 0.68 5.04 16 21 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 1.15 6.43 -2.39 -0.02 1.14 16 25 H 0.07 1.22 7.68 -2.39 -0.02 1.20 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 1.88 6.43 -2.39 -0.02 1.87 16 30 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.39 7.78 9.04 -74.06 -0.67 7.11 16 32 H 0.09 3.17 8.10 -2.39 -0.02 3.15 16 33 H 0.07 2.64 7.04 -2.39 -0.02 2.62 16 34 H 0.06 2.68 7.03 -2.39 -0.02 2.66 16 35 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 3.14 8.10 -2.38 -0.02 3.12 16 Total: -1.00 -63.85 301.20 1.70 -62.15 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.24 Total: 19.32 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.07 Total: -2.90 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.83 Total: -81.76 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.64 Total: -39.29 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.86 Total: 42.48 kcal Total: -63.85 1.70 -62.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.668 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds