Wall clock time and date at job start Mon Mar 30 2020 04:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 O 1.42908 * 109.46995 * 294.99566 * 4 3 2 7 7 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 8 8 C 1.50703 * 109.47381 * 184.99897 * 7 4 3 9 9 O 1.21285 * 119.99550 * 359.97438 * 8 7 4 10 10 N 1.34773 * 120.00252 * 180.02562 * 8 7 4 11 11 C 1.47064 * 136.05438 * 359.62036 * 10 8 7 12 12 C 1.53760 * 87.88507 * 152.96805 * 11 10 8 13 13 C 1.50704 * 114.26615 * 139.79119 * 12 11 10 14 14 H 1.08000 * 119.99819 * 266.47647 * 13 12 11 15 15 C 1.37884 * 119.99985 * 86.47468 * 13 12 11 16 16 N 1.31513 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47037 * 60.00087 * 17 15 13 19 19 H 1.48502 * 109.46967 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47212 * 300.00246 * 17 15 13 21 21 C 1.47062 * 136.05821 * 179.97438 * 10 8 7 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 0.96698 * 113.99620 * 300.00189 * 6 4 3 30 30 H 1.09001 * 109.46867 * 304.99179 * 7 4 3 31 31 H 1.09003 * 109.47171 * 64.99639 * 7 4 3 32 32 H 1.09002 * 113.47120 * 267.70020 * 11 10 8 33 33 H 1.08995 * 113.46956 * 38.14240 * 11 10 8 34 34 H 1.08996 * 114.39503 * 272.67566 * 12 11 10 35 35 H 0.96997 * 119.99925 * 179.97438 * 16 15 13 36 36 H 1.08997 * 113.47184 * 321.86484 * 21 10 8 37 37 H 1.09001 * 113.46788 * 92.24116 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 8 4.0468 0.8729 1.2202 7 6 4.0800 2.8795 -0.1263 8 6 5.5819 2.8705 -0.2505 9 8 6.1849 1.8183 -0.2390 10 7 6.2549 4.0317 -0.3732 11 6 5.9029 5.4583 -0.4329 12 6 7.2949 5.7673 0.1425 13 6 7.9688 6.9650 -0.4760 14 1 8.6448 6.8344 -1.3081 15 6 7.7224 8.2276 0.0204 16 7 6.8996 8.3865 1.0339 17 14 8.5583 9.7120 -0.7458 18 1 8.1787 9.8093 -2.1782 19 1 8.1296 10.9432 -0.0348 20 1 10.0315 9.5634 -0.6332 21 6 7.6638 4.4293 -0.5126 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.7617 1.3473 2.0132 30 1 3.6451 3.3432 -1.0118 31 1 3.7920 3.4460 0.7592 32 1 5.7611 5.8284 -1.4483 33 1 5.0854 5.7320 0.2340 34 1 7.3437 5.7601 1.2313 35 1 6.7265 9.2747 1.3834 36 1 8.3464 3.8265 0.0864 37 1 7.9869 4.5269 -1.5490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:39 Heat of formation + Delta-G solvation = -74.849932 kcal Electronic energy + Delta-G solvation = -17237.283313 eV Core-core repulsion = 14401.097656 eV Total energy + Delta-G solvation = -2836.185657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.58439 -38.06910 -36.59654 -34.15555 -32.70434 -31.29056 -29.18547 -27.15234 -25.00646 -24.89931 -22.31611 -21.24503 -20.27095 -18.12274 -16.89171 -16.37632 -16.32979 -15.91228 -14.96983 -14.80440 -14.49814 -14.15733 -13.97966 -13.47746 -13.26698 -12.42634 -12.14853 -12.10293 -11.85302 -11.63313 -11.51364 -11.34664 -11.20659 -10.96163 -10.83800 -10.78890 -10.69854 -10.35348 -9.89668 -9.57733 -9.20637 -8.93127 -8.59324 -7.82077 -6.20059 -4.25599 3.23870 3.24516 3.29423 3.31636 3.58313 4.31419 4.45838 4.65415 4.82124 4.89581 5.07308 5.10599 5.19236 5.31089 5.44682 5.50731 5.66825 5.69712 5.75314 5.90665 5.95898 6.05681 6.18314 6.19745 6.26155 6.28865 6.46015 6.56310 6.66914 6.81207 7.54260 7.77887 7.80336 8.17128 8.58712 8.78219 8.83746 9.41206 10.89698 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045574 B = 0.004223 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.237611 B = 6628.592480 C = 6970.586350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.152 4.152 4 C 0.125 3.875 5 H 0.102 0.898 6 O -0.546 6.546 7 C -0.169 4.169 8 C 0.531 3.469 9 O -0.551 6.551 10 N -0.647 5.647 11 C 0.097 3.903 12 C 0.035 3.965 13 C -0.518 4.518 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.099 3.901 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.366 0.634 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.265 0.735 36 H 0.056 0.944 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.989 -8.836 -1.566 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.190 4.190 4 C 0.065 3.935 5 H 0.120 0.880 6 O -0.350 6.350 7 C -0.209 4.209 8 C 0.320 3.680 9 O -0.430 6.430 10 N -0.382 5.382 11 C -0.025 4.025 12 C 0.016 3.984 13 C -0.556 4.556 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.023 4.023 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.212 0.788 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.604 -9.878 -1.829 14.608 hybrid contribution -0.054 1.502 -0.127 1.508 sum -10.658 -8.376 -1.956 13.696 Atomic orbital electron populations 1.21789 0.96120 1.01443 1.01632 1.21452 0.95256 0.96448 1.02706 1.22365 0.96102 0.97750 1.02798 1.21671 0.91212 0.91906 0.88708 0.88042 1.86701 1.77033 1.56239 1.14981 1.22380 0.94080 0.99748 1.04673 1.19948 0.88962 0.82174 0.76940 1.90674 1.70152 1.30238 1.51986 1.50046 1.11308 1.06457 1.70370 1.23631 1.02438 0.75911 1.00535 1.20371 0.90413 0.90444 0.97158 1.20893 1.27405 0.90470 1.16862 0.91899 1.25029 0.94764 0.99187 0.94532 1.69939 1.34953 1.23287 1.24167 0.86588 0.80031 0.81618 0.79397 1.20064 1.21215 1.20033 1.23299 0.82187 0.96341 1.00467 0.92865 0.92903 0.92886 0.92053 0.91284 0.91055 0.91556 0.78783 0.88671 0.88996 0.90919 0.92362 0.91409 0.92581 0.92579 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.15 5.83 -26.73 -0.16 -1.31 16 3 C -0.15 -1.50 4.89 -26.73 -0.13 -1.63 16 4 C 0.12 1.64 2.51 -26.73 -0.07 1.57 16 5 H 0.10 1.50 7.95 -51.93 -0.41 1.08 16 6 O -0.55 -7.97 12.11 -49.66 -0.60 -8.58 16 7 C -0.17 -2.41 5.21 -27.88 -0.15 -2.55 16 8 C 0.53 10.42 7.96 -10.99 -0.09 10.33 16 9 O -0.55 -12.68 16.20 -8.87 -0.14 -12.82 16 10 N -0.65 -13.29 3.69 -185.08 -0.68 -13.98 16 11 C 0.10 2.03 8.00 -8.37 -0.07 1.96 16 12 C 0.04 0.83 3.79 -91.13 -0.35 0.48 16 13 C -0.52 -13.18 8.83 -34.44 -0.30 -13.48 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -23.96 13.26 55.43 0.74 -23.23 16 17 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.10 2.12 8.17 -8.52 -0.07 2.05 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.37 4.00 9.04 45.56 0.41 4.41 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -30.03 313.36 -7.53 -37.56 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.44 Total: 3.14 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.10 Total: -1.75 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.05 Total: -37.20 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.74 Total: -21.40 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.03 -7.53 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.285 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds