Wall clock time and date at job start Mon Mar 30 2020 04:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 O 1.42908 * 109.46995 * 294.99566 * 4 3 2 7 7 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 8 8 C 1.50703 * 109.47381 * 184.99897 * 7 4 3 9 9 O 1.21285 * 119.99550 * 359.97438 * 8 7 4 10 10 N 1.34773 * 120.00252 * 180.02562 * 8 7 4 11 11 C 1.47064 * 136.05438 * 359.62036 * 10 8 7 12 12 C 1.53760 * 87.88507 * 152.96805 * 11 10 8 13 13 C 1.50704 * 114.26615 * 139.79119 * 12 11 10 14 14 H 1.08000 * 119.99819 * 266.47647 * 13 12 11 15 15 C 1.37884 * 119.99985 * 86.47468 * 13 12 11 16 16 N 1.31513 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47037 * 60.00087 * 17 15 13 19 19 H 1.48502 * 109.46967 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47212 * 300.00246 * 17 15 13 21 21 C 1.47062 * 136.05821 * 179.97438 * 10 8 7 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 0.96698 * 113.99620 * 300.00189 * 6 4 3 30 30 H 1.09001 * 109.46867 * 304.99179 * 7 4 3 31 31 H 1.09003 * 109.47171 * 64.99639 * 7 4 3 32 32 H 1.09002 * 113.47120 * 267.70020 * 11 10 8 33 33 H 1.08995 * 113.46956 * 38.14240 * 11 10 8 34 34 H 1.08996 * 114.39503 * 272.67566 * 12 11 10 35 35 H 0.96997 * 119.99925 * 179.97438 * 16 15 13 36 36 H 1.08997 * 113.47184 * 321.86484 * 21 10 8 37 37 H 1.09001 * 113.46788 * 92.24116 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 8 4.0468 0.8729 1.2202 7 6 4.0800 2.8795 -0.1263 8 6 5.5819 2.8705 -0.2505 9 8 6.1849 1.8183 -0.2390 10 7 6.2549 4.0317 -0.3732 11 6 5.9029 5.4583 -0.4329 12 6 7.2949 5.7673 0.1425 13 6 7.9688 6.9650 -0.4760 14 1 8.6448 6.8344 -1.3081 15 6 7.7224 8.2276 0.0204 16 7 6.8996 8.3865 1.0339 17 14 8.5583 9.7120 -0.7458 18 1 8.1787 9.8093 -2.1782 19 1 8.1296 10.9432 -0.0348 20 1 10.0315 9.5634 -0.6332 21 6 7.6638 4.4293 -0.5126 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.7617 1.3473 2.0132 30 1 3.6451 3.3432 -1.0118 31 1 3.7920 3.4460 0.7592 32 1 5.7611 5.8284 -1.4483 33 1 5.0854 5.7320 0.2340 34 1 7.3437 5.7601 1.2313 35 1 6.7265 9.2747 1.3834 36 1 8.3464 3.8265 0.0864 37 1 7.9869 4.5269 -1.5490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:38 Heat of formation + Delta-G solvation = -94.213129 kcal Electronic energy + Delta-G solvation = -17238.122964 eV Core-core repulsion = 14401.097656 eV Total energy + Delta-G solvation = -2837.025308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16953 -39.39886 -38.05891 -34.99132 -34.64210 -32.52584 -30.74258 -28.29498 -26.77078 -26.53578 -23.40516 -22.09234 -21.93020 -19.71557 -18.73568 -17.82271 -17.51521 -17.17555 -16.58831 -16.18380 -16.04304 -15.43489 -15.07351 -14.72386 -14.23938 -14.13597 -13.79326 -13.29253 -13.21988 -12.91149 -12.75015 -12.68229 -12.59102 -12.55639 -12.17859 -12.15081 -11.65846 -11.50250 -11.40061 -11.05485 -10.95534 -10.61670 -10.48051 -9.52515 -8.16353 -6.27471 1.49247 1.50283 1.57603 1.70032 2.04064 2.46893 3.13795 3.40708 3.63987 3.72296 4.08223 4.12051 4.25695 4.27279 4.36815 4.42506 4.57478 4.59945 4.67447 4.71325 4.74670 4.86236 4.93887 4.97552 5.02160 5.10790 5.11510 5.27985 5.40494 5.49649 5.59715 5.81605 6.23915 6.80589 6.90555 6.97385 7.23600 7.42582 8.93396 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045574 B = 0.004223 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.237611 B = 6628.592480 C = 6970.586350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.127 3.873 5 H 0.080 0.920 6 O -0.571 6.571 7 C -0.158 4.158 8 C 0.523 3.477 9 O -0.589 6.589 10 N -0.649 5.649 11 C 0.115 3.885 12 C 0.023 3.977 13 C -0.531 4.531 14 H 0.065 0.935 15 C 0.023 3.977 16 N -0.917 5.917 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.101 3.899 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.381 0.619 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.050 0.950 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.364 -8.298 -2.310 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.068 3.932 5 H 0.098 0.902 6 O -0.377 6.377 7 C -0.198 4.198 8 C 0.315 3.685 9 O -0.471 6.471 10 N -0.383 5.383 11 C -0.008 4.008 12 C 0.004 3.996 13 C -0.569 4.569 14 H 0.083 0.917 15 C -0.178 4.178 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.021 4.021 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.229 0.771 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.992 -9.342 -2.575 15.418 hybrid contribution 0.424 1.269 0.138 1.345 sum -11.568 -8.073 -2.437 14.316 Atomic orbital electron populations 1.21759 0.94691 1.01982 1.02214 1.21444 0.96458 0.96154 1.01894 1.22269 0.93176 0.98219 1.04204 1.21658 0.93357 0.90557 0.87634 0.90217 1.86659 1.77769 1.57141 1.16121 1.22443 0.89707 1.01115 1.06552 1.20943 0.91080 0.81018 0.75450 1.90656 1.71500 1.31400 1.53508 1.50097 1.10777 1.06813 1.70643 1.23366 1.00788 0.75819 1.00788 1.20256 0.92755 0.91103 0.95530 1.21191 1.27496 0.91307 1.16924 0.91702 1.25745 0.95346 1.01746 0.94943 1.70041 1.36280 1.23821 1.25394 0.85608 0.78901 0.78284 0.78849 1.19153 1.21176 1.19888 1.23192 0.83096 0.95187 1.00652 0.92302 0.92253 0.92470 0.92730 0.92372 0.89625 0.90057 0.77098 0.86273 0.87195 0.90054 0.91712 0.94391 0.92593 0.93186 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -2.12 5.83 30.59 0.18 -1.94 16 3 C -0.14 -2.41 4.89 30.59 0.15 -2.26 16 4 C 0.13 3.16 2.51 30.59 0.08 3.24 16 5 H 0.08 2.32 7.95 -2.39 -0.02 2.30 16 6 O -0.57 -16.21 12.11 -135.19 -1.64 -17.85 16 7 C -0.16 -4.18 5.21 29.85 0.16 -4.02 16 8 C 0.52 20.10 7.96 87.66 0.70 20.80 16 9 O -0.59 -27.14 16.20 10.75 0.17 -26.97 16 10 N -0.65 -26.15 3.69 -857.87 -3.16 -29.31 16 11 C 0.11 4.66 8.00 83.27 0.67 5.32 16 12 C 0.02 1.08 3.79 -11.12 -0.04 1.04 16 13 C -0.53 -26.86 8.83 25.60 0.23 -26.63 16 14 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 15 C 0.02 1.16 5.46 84.66 0.46 1.62 16 16 N -0.92 -49.51 13.26 21.45 0.28 -49.22 16 17 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 21 C 0.10 4.33 8.17 83.17 0.68 5.01 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.38 7.83 9.04 -74.06 -0.67 7.16 16 30 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 32 H 0.08 3.17 8.10 -2.39 -0.02 3.16 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 34 H 0.04 2.00 8.11 -2.39 -0.02 1.98 16 35 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 37 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 Total: -1.00 -63.84 313.36 2.02 -61.82 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.37 Total: 18.32 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 3.96 Total: 0.84 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.88 Total: -78.53 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.46 Total: -44.82 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -63.84 2.02 -61.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.392 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds