Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48493 * 109.47179 * 95.22895 * 3 2 1 5 5 H 1.48494 * 109.46746 * 215.22768 * 3 2 1 6 6 H 1.48498 * 109.47200 * 335.22671 * 3 2 1 7 7 C 1.37878 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 0.85686 * 7 2 1 9 9 C 1.50705 * 119.99859 * 180.85740 * 7 2 1 10 10 C 1.52996 * 115.54896 * 273.34018 * 9 7 2 11 11 O 1.42902 * 109.47206 * 296.47568 * 10 9 7 12 12 C 1.42896 * 114.00030 * 184.79238 * 11 10 9 13 13 H 1.08997 * 109.52589 * 32.53028 * 12 11 10 14 14 C 1.53090 * 109.52530 * 272.39878 * 12 11 10 15 15 O 1.42900 * 109.41755 * 182.48644 * 14 12 11 16 16 C 1.42902 * 114.09923 * 61.16271 * 15 14 12 17 17 C 1.53103 * 109.41248 * 298.84083 * 16 15 14 18 18 C 1.53183 * 109.51890 * 152.65409 * 12 11 10 19 19 H 1.09000 * 109.54599 * 57.02250 * 18 12 11 20 20 N 1.46899 * 109.54334 * 296.75075 * 18 12 11 21 21 C 1.52999 * 117.49782 * 127.63203 * 9 7 2 22 22 C 1.53002 * 60.00124 * 252.50963 * 21 9 7 23 23 H 0.97006 * 119.99878 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47020 * 56.47105 * 10 9 7 25 25 H 1.09001 * 109.47307 * 176.47440 * 10 9 7 26 26 H 1.09000 * 109.48379 * 302.47376 * 14 12 11 27 27 H 1.09001 * 109.47904 * 62.49243 * 14 12 11 28 28 H 1.08994 * 109.48292 * 58.82232 * 16 15 14 29 29 H 1.08997 * 109.48291 * 178.84827 * 16 15 14 30 30 H 1.08994 * 109.52263 * 177.51582 * 17 16 15 31 31 H 1.08997 * 109.52220 * 297.64340 * 17 16 15 32 32 H 1.00903 * 110.99998 * 180.02562 * 20 18 12 33 33 H 1.00897 * 110.99861 * 303.95756 * 20 18 12 34 34 H 1.09000 * 117.50143 * 0.02562 * 21 9 7 35 35 H 1.09004 * 117.49678 * 145.01890 * 21 9 7 36 36 H 1.08996 * 117.49814 * 252.51629 * 22 21 9 37 37 H 1.08997 * 117.49617 * 107.48669 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6072 1.9827 1.3942 5 1 3.4871 1.4745 -0.8076 6 1 1.3958 2.6821 -0.5867 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0130 9 6 3.5114 -1.1941 0.0201 10 6 4.1891 -1.1040 -1.3487 11 8 3.8625 -2.2625 -2.1191 12 6 4.5335 -2.3308 -3.3788 13 1 5.5189 -1.8730 -3.2921 14 6 3.7144 -1.5856 -4.4359 15 8 4.3578 -1.7045 -5.7063 16 6 4.4834 -3.0492 -6.1732 17 6 5.3335 -3.8533 -5.1859 18 6 4.6851 -3.7960 -3.7992 19 1 3.7033 -4.2680 -3.8370 20 7 5.5339 -4.5003 -2.8290 21 6 4.2039 -2.0304 1.0981 22 6 4.2027 -0.5036 1.1975 23 1 -0.4850 0.8401 -0.0004 24 1 3.8404 -0.2118 -1.8687 25 1 5.2696 -1.0485 -1.2163 26 1 2.7152 -2.0175 -4.4927 27 1 3.6403 -0.5330 -4.1628 28 1 3.4944 -3.5003 -6.2527 29 1 4.9634 -3.0509 -7.1518 30 1 5.3939 -4.8899 -5.5173 31 1 6.3357 -3.4276 -5.1372 32 1 5.6488 -5.4694 -3.0855 33 1 6.4283 -4.0435 -2.7325 34 1 3.5696 -2.5808 1.7929 35 1 5.1425 -2.5167 0.8322 36 1 5.1405 0.0145 0.9969 37 1 3.5676 -0.0493 1.9579 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686571165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = -64.079108 kcal Electronic energy + Delta-G solvation = -18260.153907 eV Core-core repulsion = 15424.435309 eV Total energy + Delta-G solvation = -2835.718599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64737 -37.48868 -35.90806 -34.75154 -31.99012 -30.47095 -29.41945 -26.55484 -24.99463 -23.65369 -23.00831 -21.52275 -20.37169 -18.91531 -16.77818 -16.40630 -16.35589 -15.76422 -15.41848 -14.94225 -14.81783 -14.07270 -13.85503 -13.50557 -13.28904 -12.93515 -12.61325 -12.36159 -12.09384 -11.55052 -11.33664 -11.27181 -11.07509 -10.65229 -10.40180 -10.23359 -9.96636 -9.87637 -9.54806 -9.06862 -8.66838 -8.57998 -8.46380 -8.35831 -6.01658 -4.02080 3.32309 3.40935 3.42936 3.73442 4.21272 4.47054 4.47639 4.73806 4.82100 4.91531 5.14433 5.21642 5.22340 5.29154 5.43447 5.55933 5.62960 5.68559 5.80196 5.91444 6.05159 6.08684 6.17319 6.20471 6.32506 6.46776 6.54659 6.81836 7.11063 7.15730 7.16873 7.22523 7.47554 7.82198 8.03310 8.63662 9.05138 9.61340 11.10911 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.007519 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.094186 B = 3723.225889 C = 4220.824699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.295 1.295 7 C -0.471 4.471 8 H 0.079 0.921 9 C 0.003 3.997 10 C 0.101 3.899 11 O -0.335 6.335 12 C 0.065 3.935 13 H 0.055 0.945 14 C 0.036 3.964 15 O -0.382 6.382 16 C 0.061 3.939 17 C -0.188 4.188 18 C 0.095 3.905 19 H 0.091 0.909 20 N -0.828 5.828 21 C -0.169 4.169 22 C -0.201 4.201 23 H 0.263 0.737 24 H 0.042 0.958 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.337 0.663 33 H 0.336 0.664 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.930 -5.559 -9.753 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.222 1.222 7 C -0.508 4.508 8 H 0.097 0.903 9 C 0.002 3.998 10 C 0.024 3.976 11 O -0.253 6.253 12 C 0.005 3.995 13 H 0.073 0.927 14 C -0.041 4.041 15 O -0.301 6.301 16 C -0.016 4.016 17 C -0.228 4.228 18 C -0.017 4.017 19 H 0.109 0.891 20 N -0.355 5.355 21 C -0.207 4.207 22 C -0.239 4.239 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.117 -5.250 -9.226 15.371 hybrid contribution 1.189 0.810 -0.747 1.621 sum 12.307 -4.441 -9.973 16.451 Atomic orbital electron populations 1.69896 1.06243 1.26851 1.50956 1.24977 0.94591 0.98793 0.94416 0.86906 0.80066 0.83609 0.78704 1.20249 1.18898 1.22171 1.20247 0.86203 0.94458 1.49931 0.90285 1.19264 0.95293 1.00086 0.85158 1.22397 0.95032 0.87204 0.92961 1.88138 1.66619 1.43536 1.27016 1.22562 0.95685 0.94524 0.86721 0.92662 1.23225 0.96220 1.02291 0.82371 1.87924 1.80427 1.25977 1.35734 1.22512 0.99071 0.83158 0.96892 1.23135 1.00865 1.01186 0.97598 1.21564 0.97980 0.94263 0.87922 0.89098 1.58683 1.19692 1.05772 1.51376 1.22732 1.01200 0.92118 1.04603 1.23007 1.01243 0.95693 1.03909 0.92711 0.93965 0.96073 0.91614 0.88314 0.92816 0.89051 0.90656 0.91235 0.84986 0.85178 0.89574 0.90813 0.91145 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.92 24.86 -169.99 -4.23 17.70 16 4 H -0.28 -6.73 7.03 56.52 0.40 -6.33 16 5 H -0.26 -6.22 5.81 56.52 0.33 -5.89 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 7 C -0.47 -13.54 9.33 -34.44 -0.32 -13.86 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.00 0.07 1.09 -155.66 -0.17 -0.10 16 10 C 0.10 2.20 5.34 37.16 0.20 2.40 16 11 O -0.34 -7.10 9.83 -35.23 -0.35 -7.44 16 12 C 0.06 1.07 2.38 -26.59 -0.06 1.01 16 13 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 14 C 0.04 0.59 6.43 37.20 0.24 0.82 16 15 O -0.38 -5.60 10.77 -35.23 -0.38 -5.98 16 16 C 0.06 0.68 6.84 37.21 0.25 0.94 16 17 C -0.19 -1.95 5.71 -26.58 -0.15 -2.10 16 18 C 0.09 1.29 3.02 -67.52 -0.20 1.08 16 19 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 20 N -0.83 -10.57 9.19 -4.50 -0.04 -10.61 16 21 C -0.17 -3.65 9.95 -26.73 -0.27 -3.91 16 22 C -0.20 -4.40 7.64 -26.73 -0.20 -4.60 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.04 0.95 6.24 -51.93 -0.32 0.63 16 25 H 0.02 0.42 7.94 -51.93 -0.41 0.00 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.65 7.86 -51.93 -0.41 1.24 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.34 3.43 9.04 -39.29 -0.36 3.07 16 33 H 0.34 3.88 8.98 -39.29 -0.35 3.53 16 34 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.06 7.20 -51.93 -0.37 1.69 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -31.72 296.41 -6.61 -38.33 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.07 Total: 6.88 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.79 Total: -16.28 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.73 Total: -37.67 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.73 Total: -13.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.23 Total: 17.70 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.72 -6.61 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686571165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.750 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds