Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99985 * 2 1 4 4 H 1.48493 * 109.47179 * 95.22895 * 3 2 1 5 5 H 1.48494 * 109.46746 * 215.22768 * 3 2 1 6 6 H 1.48498 * 109.47200 * 335.22671 * 3 2 1 7 7 C 1.37878 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 0.85686 * 7 2 1 9 9 C 1.50705 * 119.99859 * 180.85740 * 7 2 1 10 10 C 1.52996 * 115.54896 * 273.34018 * 9 7 2 11 11 O 1.42902 * 109.47206 * 296.47568 * 10 9 7 12 12 C 1.42896 * 114.00030 * 184.79238 * 11 10 9 13 13 H 1.08997 * 109.52589 * 32.53028 * 12 11 10 14 14 C 1.53090 * 109.52530 * 272.39878 * 12 11 10 15 15 O 1.42900 * 109.41755 * 182.48644 * 14 12 11 16 16 C 1.42902 * 114.09923 * 61.16271 * 15 14 12 17 17 C 1.53103 * 109.41248 * 298.84083 * 16 15 14 18 18 C 1.53183 * 109.51890 * 152.65409 * 12 11 10 19 19 H 1.09000 * 109.54599 * 57.02250 * 18 12 11 20 20 N 1.46899 * 109.54334 * 296.75075 * 18 12 11 21 21 C 1.52999 * 117.49782 * 127.63203 * 9 7 2 22 22 C 1.53002 * 60.00124 * 252.50963 * 21 9 7 23 23 H 0.97006 * 119.99878 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47020 * 56.47105 * 10 9 7 25 25 H 1.09001 * 109.47307 * 176.47440 * 10 9 7 26 26 H 1.09000 * 109.48379 * 302.47376 * 14 12 11 27 27 H 1.09001 * 109.47904 * 62.49243 * 14 12 11 28 28 H 1.08994 * 109.48292 * 58.82232 * 16 15 14 29 29 H 1.08997 * 109.48291 * 178.84827 * 16 15 14 30 30 H 1.08994 * 109.52263 * 177.51582 * 17 16 15 31 31 H 1.08997 * 109.52220 * 297.64340 * 17 16 15 32 32 H 1.00903 * 110.99998 * 180.02562 * 20 18 12 33 33 H 1.00897 * 110.99861 * 303.95756 * 20 18 12 34 34 H 1.09000 * 117.50143 * 0.02562 * 21 9 7 35 35 H 1.09004 * 117.49678 * 145.01890 * 21 9 7 36 36 H 1.08996 * 117.49814 * 252.51629 * 22 21 9 37 37 H 1.08997 * 117.49617 * 107.48669 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6072 1.9827 1.3942 5 1 3.4871 1.4745 -0.8076 6 1 1.3958 2.6821 -0.5867 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0130 9 6 3.5114 -1.1941 0.0201 10 6 4.1891 -1.1040 -1.3487 11 8 3.8625 -2.2625 -2.1191 12 6 4.5335 -2.3308 -3.3788 13 1 5.5189 -1.8730 -3.2921 14 6 3.7144 -1.5856 -4.4359 15 8 4.3578 -1.7045 -5.7063 16 6 4.4834 -3.0492 -6.1732 17 6 5.3335 -3.8533 -5.1859 18 6 4.6851 -3.7960 -3.7992 19 1 3.7033 -4.2680 -3.8370 20 7 5.5339 -4.5003 -2.8290 21 6 4.2039 -2.0304 1.0981 22 6 4.2027 -0.5036 1.1975 23 1 -0.4850 0.8401 -0.0004 24 1 3.8404 -0.2118 -1.8687 25 1 5.2696 -1.0485 -1.2163 26 1 2.7152 -2.0175 -4.4927 27 1 3.6403 -0.5330 -4.1628 28 1 3.4944 -3.5003 -6.2527 29 1 4.9634 -3.0509 -7.1518 30 1 5.3939 -4.8899 -5.5173 31 1 6.3357 -3.4276 -5.1372 32 1 5.6488 -5.4694 -3.0855 33 1 6.4283 -4.0435 -2.7325 34 1 3.5696 -2.5808 1.7929 35 1 5.1425 -2.5167 0.8322 36 1 5.1405 0.0145 0.9969 37 1 3.5676 -0.0493 1.9579 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686571165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = -89.129866 kcal Electronic energy + Delta-G solvation = -18261.240190 eV Core-core repulsion = 15424.435309 eV Total energy + Delta-G solvation = -2836.804881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81891 -39.10695 -37.40379 -35.91444 -34.20449 -31.47091 -30.61880 -28.38643 -26.95889 -24.74644 -24.12035 -23.24157 -21.54712 -20.78505 -18.44248 -17.98163 -17.51289 -16.98108 -16.81746 -16.64824 -16.11258 -15.54741 -15.19948 -14.83076 -14.68620 -14.65187 -14.03325 -13.89284 -13.41934 -13.06587 -12.99723 -12.57326 -12.39626 -12.19078 -12.10714 -11.90500 -11.53008 -11.40090 -11.12774 -10.84992 -10.63448 -10.34853 -10.02337 -9.51470 -8.25936 -6.31799 1.36065 1.37331 1.49026 2.38322 2.49907 2.96337 3.08084 3.38475 3.46580 3.70207 3.85417 3.94884 4.02352 4.15455 4.20746 4.35200 4.42949 4.44807 4.49821 4.59402 4.66267 4.70608 4.78281 4.81751 4.85964 4.97835 5.10231 5.14710 5.36954 5.50042 5.73242 6.03527 6.23271 6.34739 6.58055 6.65364 6.76677 7.35711 8.90778 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.007519 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.094186 B = 3723.225889 C = 4220.824699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.237 1.237 6 H -0.298 1.298 7 C -0.475 4.475 8 H 0.022 0.978 9 C -0.030 4.030 10 C 0.108 3.892 11 O -0.365 6.365 12 C 0.060 3.940 13 H 0.067 0.933 14 C 0.042 3.958 15 O -0.391 6.391 16 C 0.050 3.950 17 C -0.173 4.173 18 C 0.098 3.902 19 H 0.071 0.929 20 N -0.841 5.841 21 C -0.157 4.157 22 C -0.186 4.186 23 H 0.264 0.736 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.352 0.648 33 H 0.344 0.656 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.288 -5.245 -10.588 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.186 1.186 5 H -0.160 1.160 6 H -0.225 1.225 7 C -0.513 4.513 8 H 0.041 0.959 9 C -0.031 4.031 10 C 0.031 3.969 11 O -0.284 6.284 12 C 0.001 3.999 13 H 0.085 0.915 14 C -0.036 4.036 15 O -0.310 6.310 16 C -0.026 4.026 17 C -0.213 4.213 18 C -0.014 4.014 19 H 0.089 0.911 20 N -0.372 5.372 21 C -0.195 4.195 22 C -0.223 4.223 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.509 -4.969 -10.069 18.346 hybrid contribution 0.084 0.546 -0.524 0.761 sum 14.592 -4.424 -10.593 18.567 Atomic orbital electron populations 1.70063 1.08389 1.27940 1.53045 1.25869 0.95304 1.02928 0.93966 0.85885 0.79575 0.78159 0.79854 1.18589 1.15985 1.22473 1.20362 0.89232 0.92342 1.49366 0.95943 1.19230 0.92707 1.03596 0.87564 1.22191 0.96249 0.87045 0.91378 1.88103 1.68003 1.43281 1.28985 1.22811 0.95550 0.96743 0.84778 0.91545 1.23016 0.95708 1.01462 0.83448 1.87910 1.80098 1.28359 1.34654 1.22844 0.99841 0.81651 0.98312 1.23023 1.00486 1.02818 0.94963 1.21459 0.97785 0.92181 0.90019 0.91108 1.58606 1.20131 1.06831 1.51589 1.22749 1.01610 0.92435 1.02659 1.23051 1.01888 0.95897 1.01481 0.92671 0.95214 0.92970 0.93232 0.89506 0.92695 0.86164 0.87882 0.90324 0.83323 0.84216 0.90902 0.87929 0.87482 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 2 C 0.02 0.93 5.47 84.65 0.46 1.40 16 3 Si 0.94 44.92 24.86 68.60 1.71 46.62 16 4 H -0.26 -11.75 7.03 99.48 0.70 -11.05 16 5 H -0.24 -10.19 5.81 99.48 0.58 -9.61 16 6 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 7 C -0.48 -28.31 9.33 25.60 0.24 -28.08 16 8 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 9 C -0.03 -1.43 1.09 -52.93 -0.06 -1.48 16 10 C 0.11 4.52 5.34 71.98 0.38 4.91 16 11 O -0.36 -15.35 9.83 -148.98 -1.46 -16.81 16 12 C 0.06 1.92 2.38 30.69 0.07 1.99 16 13 H 0.07 1.95 7.75 -2.39 -0.02 1.94 16 14 C 0.04 1.33 6.43 72.01 0.46 1.80 16 15 O -0.39 -10.89 10.77 -148.98 -1.60 -12.49 16 16 C 0.05 0.99 6.84 72.02 0.49 1.49 16 17 C -0.17 -3.05 5.71 30.69 0.18 -2.88 16 18 C 0.10 2.50 3.02 45.04 0.14 2.63 16 19 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 20 N -0.84 -19.61 9.19 -168.16 -1.55 -21.15 16 21 C -0.16 -6.48 9.95 30.59 0.30 -6.18 16 22 C -0.19 -7.57 7.64 30.60 0.23 -7.33 16 23 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 24 H 0.03 1.30 6.24 -2.39 -0.01 1.28 16 25 H 0.05 1.85 7.94 -2.39 -0.02 1.83 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 2.93 7.86 -2.39 -0.02 2.91 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.35 6.30 9.04 -89.69 -0.81 5.49 16 33 H 0.34 6.96 8.98 -89.70 -0.81 6.16 16 34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 37 H 0.08 3.37 7.20 -2.39 -0.02 3.35 16 Total: -1.00 -71.49 296.41 -0.39 -71.88 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.69 Total: 24.81 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 2.91 Total: -31.74 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.25 Total: -82.27 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -3.07 Total: -29.31 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.71 Total: 46.62 kcal Total: -71.49 -0.39 -71.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686571165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.245 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds