Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48492 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46806 * 299.99974 * 3 2 1 6 6 H 1.48491 * 109.47332 * 59.99897 * 3 2 1 7 7 C 1.37880 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99736 * 184.69700 * 7 2 1 9 9 C 1.50695 * 119.99914 * 4.69479 * 7 2 1 10 10 C 1.52995 * 115.55341 * 324.46570 * 9 7 2 11 11 O 1.42898 * 109.47497 * 185.80451 * 10 9 7 12 12 C 1.42899 * 114.00104 * 175.01709 * 11 10 9 13 13 H 1.08999 * 109.52476 * 34.74825 * 12 11 10 14 14 C 1.53095 * 109.52330 * 274.55141 * 12 11 10 15 15 O 1.42895 * 109.41456 * 297.70420 * 14 12 11 16 16 C 1.42908 * 114.09964 * 298.84137 * 15 14 12 17 17 C 1.53090 * 109.41395 * 61.15998 * 16 15 14 18 18 C 1.53175 * 109.16370 * 302.38920 * 17 16 15 19 19 H 1.09003 * 109.61867 * 297.07791 * 18 17 16 20 20 N 1.46898 * 109.54610 * 176.84919 * 18 17 16 21 21 C 1.52998 * 117.49658 * 110.13534 * 9 7 2 22 22 C 1.53000 * 117.49910 * 178.79363 * 9 7 2 23 23 H 0.96999 * 119.99342 * 4.99537 * 1 2 3 24 24 H 1.09000 * 109.47188 * 65.80072 * 10 9 7 25 25 H 1.08998 * 109.47451 * 305.80516 * 10 9 7 26 26 H 1.08995 * 109.47453 * 57.68979 * 14 12 11 27 27 H 1.08997 * 109.47725 * 177.72279 * 14 12 11 28 28 H 1.08997 * 109.47578 * 301.17290 * 16 15 14 29 29 H 1.09002 * 109.47800 * 181.14156 * 16 15 14 30 30 H 1.09002 * 109.52192 * 182.48689 * 17 16 15 31 31 H 1.08998 * 109.52331 * 62.29739 * 17 16 15 32 32 H 1.00906 * 110.99627 * 60.44271 * 20 18 17 33 33 H 1.00896 * 111.00223 * 184.39898 * 20 18 17 34 34 H 1.09003 * 117.49865 * 214.99653 * 21 9 7 35 35 H 1.09001 * 117.50198 * 0.02562 * 21 9 7 36 36 H 1.09000 * 117.49806 * 359.97438 * 22 9 7 37 37 H 1.09003 * 117.50177 * 144.97151 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0818 -1.1956 0.0771 9 6 1.2548 -2.4970 -0.1057 10 6 -0.1015 -2.5374 0.6011 11 8 -0.6343 -3.8617 0.5342 12 6 -1.8507 -4.0364 1.2634 13 1 -2.4430 -3.1230 1.2079 14 6 -1.5293 -4.3513 2.7267 15 8 -0.8021 -5.5792 2.7996 16 6 -1.5147 -6.7103 2.2947 17 6 -1.8354 -6.4902 0.8141 18 6 -2.6458 -5.1993 0.6616 19 1 -3.5967 -5.3002 1.1849 20 7 -2.8937 -4.9400 -0.7629 21 6 1.3976 -3.2901 -1.4062 22 6 2.0784 -3.7862 -0.1282 23 1 -0.4849 0.8369 -0.0732 24 1 -0.7868 -1.8450 0.1123 25 1 0.0238 -2.2486 1.6446 26 1 -0.9270 -3.5464 3.1478 27 1 -2.4574 -4.4444 3.2907 28 1 -2.4425 -6.8343 2.8532 29 1 -0.9016 -7.6049 2.4048 30 1 -2.4172 -7.3319 0.4383 31 1 -0.9072 -6.4065 0.2488 32 1 -3.4171 -5.6941 -1.1819 33 1 -3.3644 -4.0571 -0.8931 34 1 0.5253 -3.8408 -1.7582 35 1 2.0342 -2.8698 -2.1848 36 1 3.1626 -3.6919 -0.0665 37 1 1.6542 -4.6631 0.3611 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686571169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = -63.634062 kcal Electronic energy + Delta-G solvation = -18555.187587 eV Core-core repulsion = 15719.488286 eV Total energy + Delta-G solvation = -2835.699300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.42036 -36.98828 -35.34186 -34.21915 -32.12024 -30.39460 -29.26077 -26.00126 -24.91461 -23.49974 -23.03467 -20.85273 -19.58925 -18.83166 -16.47196 -16.05417 -15.88321 -15.62919 -15.29078 -14.93465 -14.57215 -13.92161 -13.65639 -13.39137 -12.91287 -12.67848 -12.32494 -11.95067 -11.60927 -11.25640 -11.03371 -11.01950 -10.67870 -10.44102 -10.30535 -9.97768 -9.96752 -9.60615 -9.25239 -8.86512 -8.54739 -8.45340 -8.31836 -7.80243 -5.98890 -4.08848 3.26824 3.34985 3.40247 4.09410 4.36316 4.50729 4.70657 4.94613 5.10532 5.10671 5.19669 5.32601 5.50428 5.66455 5.71448 5.76126 5.86366 5.88473 6.01307 6.25526 6.47671 6.54749 6.70824 6.76959 7.04495 7.10711 7.29299 7.34338 7.43753 7.54508 7.63533 7.67246 7.69218 8.02638 8.33436 8.65036 8.92895 9.51919 10.97178 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.006810 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.099763 B = 4110.617113 C = 4148.415136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.479 4.479 8 H 0.064 0.936 9 C 0.050 3.950 10 C 0.103 3.897 11 O -0.364 6.364 12 C 0.067 3.933 13 H 0.058 0.942 14 C 0.040 3.960 15 O -0.368 6.368 16 C 0.063 3.937 17 C -0.143 4.143 18 C 0.099 3.901 19 H 0.034 0.966 20 N -0.829 5.829 21 C -0.196 4.196 22 C -0.202 4.202 23 H 0.260 0.740 24 H 0.097 0.903 25 H 0.024 0.976 26 H 0.099 0.901 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.333 0.667 33 H 0.342 0.658 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -9.340 3.123 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.049 3.951 10 C 0.028 3.972 11 O -0.283 6.283 12 C 0.007 3.993 13 H 0.076 0.924 14 C -0.038 4.038 15 O -0.286 6.286 16 C -0.014 4.014 17 C -0.182 4.182 18 C -0.013 4.013 19 H 0.051 0.949 20 N -0.359 5.359 21 C -0.234 4.234 22 C -0.239 4.239 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.042 0.958 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.222 -9.354 3.085 12.214 hybrid contribution -1.006 1.115 0.201 1.515 sum -8.228 -8.240 3.286 12.099 Atomic orbital electron populations 1.69842 1.05879 1.26430 1.50587 1.25033 0.95001 0.99291 0.94335 0.86421 0.80155 0.83210 0.77601 1.19671 1.20849 1.20973 1.20700 0.92862 0.88891 1.49229 0.91825 1.18969 0.91826 0.89720 0.94541 1.22545 0.96052 0.80475 0.98136 1.87951 1.36282 1.33321 1.70719 1.22427 0.89101 0.96666 0.91096 0.92378 1.23159 0.96508 0.87516 0.96610 1.87983 1.42436 1.15549 1.82658 1.22514 0.96219 0.89694 0.92991 1.22134 1.02330 0.96081 0.97606 1.21373 0.95344 0.95473 0.89101 0.94855 1.58446 1.56793 1.06920 1.13772 1.22891 1.01771 1.06714 0.92037 1.22782 0.97082 1.00503 1.03514 0.92953 0.88571 0.95752 0.88318 0.93561 0.94153 0.89097 0.92034 0.88938 0.85449 0.84488 0.90713 0.91505 0.91712 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 10.30 55.43 0.57 -24.01 16 2 C 0.06 1.77 5.40 -17.82 -0.10 1.67 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.48 -13.51 9.06 -34.44 -0.31 -13.82 16 8 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 9 C 0.05 1.32 2.46 -155.67 -0.38 0.94 16 10 C 0.10 2.57 4.75 37.16 0.18 2.74 16 11 O -0.36 -7.92 7.50 -42.72 -0.32 -8.24 16 12 C 0.07 1.17 2.57 -26.59 -0.07 1.10 16 13 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 14 C 0.04 0.65 6.42 37.21 0.24 0.88 16 15 O -0.37 -6.32 10.69 -42.72 -0.46 -6.78 16 16 C 0.06 0.84 6.84 37.20 0.25 1.10 16 17 C -0.14 -1.99 5.56 -26.59 -0.15 -2.14 16 18 C 0.10 1.42 3.12 -67.53 -0.21 1.21 16 19 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 20 N -0.83 -11.75 9.07 -4.51 -0.04 -11.79 16 21 C -0.20 -4.89 9.67 -26.70 -0.26 -5.14 16 22 C -0.20 -4.91 9.63 -26.69 -0.26 -5.17 16 23 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 24 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 25 H 0.02 0.63 7.41 -51.93 -0.38 0.24 16 26 H 0.10 1.71 7.44 -51.93 -0.39 1.33 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.59 7.83 -51.93 -0.41 1.19 16 32 H 0.33 3.79 9.04 -39.29 -0.36 3.43 16 33 H 0.34 4.66 9.00 -39.29 -0.35 4.31 16 34 H 0.07 1.85 7.85 -51.93 -0.41 1.44 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 36 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.87 7.48 -51.93 -0.39 1.48 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -29.81 296.89 -7.76 -37.57 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.91 Total: 9.31 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.06 Total: -16.63 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.53 Total: -35.79 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.78 Total: -15.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.81 -7.76 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686571169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.065 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds