Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48492 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46806 * 299.99974 * 3 2 1 6 6 H 1.48491 * 109.47332 * 59.99897 * 3 2 1 7 7 C 1.37880 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99736 * 184.69700 * 7 2 1 9 9 C 1.50695 * 119.99914 * 4.69479 * 7 2 1 10 10 C 1.52995 * 115.55341 * 324.46570 * 9 7 2 11 11 O 1.42898 * 109.47497 * 185.80451 * 10 9 7 12 12 C 1.42899 * 114.00104 * 175.01709 * 11 10 9 13 13 H 1.08999 * 109.52476 * 34.74825 * 12 11 10 14 14 C 1.53095 * 109.52330 * 274.55141 * 12 11 10 15 15 O 1.42895 * 109.41456 * 297.70420 * 14 12 11 16 16 C 1.42908 * 114.09964 * 298.84137 * 15 14 12 17 17 C 1.53090 * 109.41395 * 61.15998 * 16 15 14 18 18 C 1.53175 * 109.16370 * 302.38920 * 17 16 15 19 19 H 1.09003 * 109.61867 * 297.07791 * 18 17 16 20 20 N 1.46898 * 109.54610 * 176.84919 * 18 17 16 21 21 C 1.52998 * 117.49658 * 110.13534 * 9 7 2 22 22 C 1.53000 * 117.49910 * 178.79363 * 9 7 2 23 23 H 0.96999 * 119.99342 * 4.99537 * 1 2 3 24 24 H 1.09000 * 109.47188 * 65.80072 * 10 9 7 25 25 H 1.08998 * 109.47451 * 305.80516 * 10 9 7 26 26 H 1.08995 * 109.47453 * 57.68979 * 14 12 11 27 27 H 1.08997 * 109.47725 * 177.72279 * 14 12 11 28 28 H 1.08997 * 109.47578 * 301.17290 * 16 15 14 29 29 H 1.09002 * 109.47800 * 181.14156 * 16 15 14 30 30 H 1.09002 * 109.52192 * 182.48689 * 17 16 15 31 31 H 1.08998 * 109.52331 * 62.29739 * 17 16 15 32 32 H 1.00906 * 110.99627 * 60.44271 * 20 18 17 33 33 H 1.00896 * 111.00223 * 184.39898 * 20 18 17 34 34 H 1.09003 * 117.49865 * 214.99653 * 21 9 7 35 35 H 1.09001 * 117.50198 * 0.02562 * 21 9 7 36 36 H 1.09000 * 117.49806 * 359.97438 * 22 9 7 37 37 H 1.09003 * 117.50177 * 144.97151 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0818 -1.1956 0.0771 9 6 1.2548 -2.4970 -0.1057 10 6 -0.1015 -2.5374 0.6011 11 8 -0.6343 -3.8617 0.5342 12 6 -1.8507 -4.0364 1.2634 13 1 -2.4430 -3.1230 1.2079 14 6 -1.5293 -4.3513 2.7267 15 8 -0.8021 -5.5792 2.7996 16 6 -1.5147 -6.7103 2.2947 17 6 -1.8354 -6.4902 0.8141 18 6 -2.6458 -5.1993 0.6616 19 1 -3.5967 -5.3002 1.1849 20 7 -2.8937 -4.9400 -0.7629 21 6 1.3976 -3.2901 -1.4062 22 6 2.0784 -3.7862 -0.1282 23 1 -0.4849 0.8369 -0.0732 24 1 -0.7868 -1.8450 0.1123 25 1 0.0238 -2.2486 1.6446 26 1 -0.9270 -3.5464 3.1478 27 1 -2.4574 -4.4444 3.2907 28 1 -2.4425 -6.8343 2.8532 29 1 -0.9016 -7.6049 2.4048 30 1 -2.4172 -7.3319 0.4383 31 1 -0.9072 -6.4065 0.2488 32 1 -3.4171 -5.6941 -1.1819 33 1 -3.3644 -4.0571 -0.8931 34 1 0.5253 -3.8408 -1.7582 35 1 2.0342 -2.8698 -2.1848 36 1 3.1626 -3.6919 -0.0665 37 1 1.6542 -4.6631 0.3611 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686571169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = -84.321750 kcal Electronic energy + Delta-G solvation = -18556.084672 eV Core-core repulsion = 15719.488286 eV Total energy + Delta-G solvation = -2836.596386 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72596 -38.79083 -36.87944 -35.61037 -34.21609 -31.53492 -30.57286 -28.03970 -26.86620 -24.64108 -24.30415 -22.86664 -21.02039 -20.67754 -18.35395 -17.43897 -17.26880 -16.99380 -16.63749 -16.40962 -16.21411 -15.62438 -15.14873 -14.96795 -14.53028 -14.14788 -13.64282 -13.44480 -13.42789 -12.92234 -12.77718 -12.59259 -12.35549 -12.24902 -11.96728 -11.63359 -11.34638 -11.24640 -11.08391 -10.68595 -10.56483 -10.16557 -9.71578 -9.47158 -8.05305 -6.24608 1.41433 1.43425 1.55674 2.40254 2.86174 3.00394 3.17281 3.55356 3.69133 3.76154 3.94975 3.99131 4.23061 4.38564 4.43432 4.53465 4.57258 4.62936 4.71919 4.74019 4.77444 4.85664 5.01891 5.03810 5.15223 5.28890 5.38953 5.48498 5.62365 5.67712 5.96403 6.23047 6.31742 6.35704 6.67847 6.73147 6.90442 7.38748 8.88986 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.006810 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.099763 B = 4110.617113 C = 4148.415136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.019 3.981 10 C 0.128 3.872 11 O -0.373 6.373 12 C 0.053 3.947 13 H 0.053 0.947 14 C 0.043 3.957 15 O -0.397 6.397 16 C 0.058 3.942 17 C -0.138 4.138 18 C 0.103 3.897 19 H 0.066 0.934 20 N -0.847 5.847 21 C -0.187 4.187 22 C -0.184 4.184 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.003 0.997 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.350 0.650 33 H 0.343 0.657 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -10.056 3.415 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.018 3.982 10 C 0.052 3.948 11 O -0.292 6.292 12 C -0.006 4.006 13 H 0.070 0.930 14 C -0.035 4.035 15 O -0.316 6.316 16 C -0.019 4.019 17 C -0.177 4.177 18 C -0.009 4.009 19 H 0.084 0.916 20 N -0.379 5.379 21 C -0.225 4.225 22 C -0.221 4.221 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.021 0.979 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.169 -10.099 3.374 13.421 hybrid contribution -0.779 1.258 0.118 1.484 sum -8.948 -8.841 3.492 13.055 Atomic orbital electron populations 1.69977 1.06892 1.27370 1.50205 1.25781 0.95919 1.02340 0.93670 0.85412 0.78821 0.78996 0.77872 1.19493 1.20126 1.20251 1.20918 0.92768 0.90354 1.50799 0.92658 1.19180 0.93029 0.90069 0.95883 1.21967 0.95061 0.81644 0.96096 1.87911 1.38356 1.31153 1.71792 1.22814 0.87659 0.98065 0.92056 0.92951 1.23081 0.97491 0.87032 0.95857 1.87941 1.44067 1.16533 1.83079 1.22779 0.97647 0.88763 0.92697 1.22090 1.00860 0.96985 0.97726 1.21387 0.96055 0.94046 0.89396 0.91591 1.58404 1.57662 1.07781 1.14038 1.22787 1.01713 1.06213 0.91777 1.22697 0.97142 0.99523 1.02779 0.92637 0.90841 0.97916 0.90611 0.89970 0.91098 0.87673 0.88890 0.92806 0.83562 0.84377 0.90780 0.91525 0.91133 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.75 10.30 21.45 0.22 -50.53 16 2 C 0.02 1.24 5.40 84.65 0.46 1.70 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.51 -29.29 9.06 25.60 0.23 -29.06 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.02 1.01 2.46 -52.93 -0.13 0.88 16 10 C 0.13 6.58 4.75 71.98 0.34 6.92 16 11 O -0.37 -16.49 7.50 -141.82 -1.06 -17.55 16 12 C 0.05 1.84 2.57 30.69 0.08 1.92 16 13 H 0.05 1.84 7.89 -2.39 -0.02 1.83 16 14 C 0.04 1.36 6.42 72.01 0.46 1.82 16 15 O -0.40 -13.18 10.69 -141.82 -1.52 -14.70 16 16 C 0.06 1.38 6.84 72.01 0.49 1.87 16 17 C -0.14 -3.53 5.56 30.68 0.17 -3.36 16 18 C 0.10 2.72 3.12 45.04 0.14 2.86 16 19 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 20 N -0.85 -22.70 9.07 -168.18 -1.52 -24.23 16 21 C -0.19 -9.39 9.67 30.62 0.30 -9.09 16 22 C -0.18 -9.03 9.63 30.62 0.29 -8.74 16 23 H 0.26 13.89 8.32 -92.71 -0.77 13.12 16 24 H 0.07 4.10 5.94 -2.39 -0.01 4.09 16 25 H 0.00 0.14 7.41 -2.39 -0.02 0.12 16 26 H 0.08 2.70 7.44 -2.39 -0.02 2.68 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.80 7.83 -2.39 -0.02 1.79 16 32 H 0.35 7.18 9.04 -89.69 -0.81 6.37 16 33 H 0.34 9.01 9.00 -89.70 -0.81 8.21 16 34 H 0.07 3.69 7.85 -2.39 -0.02 3.67 16 35 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.08 3.83 7.48 -2.39 -0.02 3.82 16 Total: -1.00 -64.38 296.89 0.43 -63.95 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.55 Total: 29.87 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 2.84 Total: -32.27 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.30 Total: -74.76 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -2.58 Total: -32.25 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.38 0.43 -63.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686571169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.368 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds