Wall clock time and date at job start Mon Mar 30 2020 04:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46540 * 2 1 4 4 C 1.52999 * 109.47011 * 119.99224 * 2 1 3 5 5 H 1.08995 * 110.83213 * 297.45560 * 4 2 1 6 6 C 1.55343 * 111.00609 * 61.24194 * 4 2 1 7 7 O 1.44376 * 103.50563 * 155.20624 * 6 4 2 8 8 C 1.43753 * 106.97328 * 319.90671 * 7 6 4 9 9 C 1.54100 * 107.28974 * 26.51104 * 8 7 6 10 10 H 1.08998 * 110.48721 * 116.78331 * 9 8 7 11 11 N 1.46499 * 110.48704 * 239.29121 * 9 8 7 12 12 C 1.46502 * 119.99959 * 53.80018 * 11 9 8 13 13 C 1.34778 * 120.00492 * 233.79438 * 11 9 8 14 14 O 1.21693 * 119.99629 * 0.02562 * 13 11 9 15 15 C 1.46377 * 120.00439 * 180.02562 * 13 11 9 16 16 H 1.08001 * 119.99564 * 359.73039 * 15 13 11 17 17 C 1.40046 * 120.00038 * 180.02562 * 15 13 11 18 18 N 1.30666 * 119.99792 * 359.72778 * 17 15 13 19 19 Si 1.86795 * 119.99902 * 179.72505 * 17 15 13 20 20 H 1.48496 * 109.47197 * 60.00193 * 19 17 15 21 21 H 1.48498 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47149 * 300.00100 * 19 17 15 23 23 H 1.08994 * 109.47776 * 299.99961 * 1 2 3 24 24 H 1.08999 * 109.47284 * 60.00879 * 1 2 3 25 25 H 1.09008 * 109.46633 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47313 * 240.00227 * 2 1 3 27 27 H 1.09000 * 109.47047 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47064 * 299.99465 * 3 2 1 29 29 H 1.08996 * 109.47572 * 59.99537 * 3 2 1 30 30 H 1.09010 * 110.64257 * 36.68251 * 6 4 2 31 31 H 1.08999 * 110.58917 * 273.69970 * 6 4 2 32 32 H 1.08998 * 109.87798 * 267.09053 * 8 7 6 33 33 H 1.08994 * 109.87995 * 145.93788 * 8 7 6 34 34 H 1.09000 * 109.47482 * 264.67507 * 12 11 9 35 35 H 1.08998 * 109.47268 * 24.67326 * 12 11 9 36 36 H 1.09004 * 109.47400 * 144.67188 * 12 11 9 37 37 H 0.97004 * 119.99977 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7264 -0.1991 2.1533 6 6 1.5678 -2.2009 1.2699 7 8 2.5557 -2.8586 2.0921 8 6 3.8330 -2.3003 1.7409 9 6 3.5797 -0.8770 1.2073 10 1 4.0557 -0.1378 1.8515 11 7 4.0707 -0.7497 -0.1670 12 6 3.6274 -1.6959 -1.1939 13 6 4.9302 0.2380 -0.4869 14 8 5.2987 1.0238 0.3662 15 6 5.4204 0.3655 -1.8602 16 1 5.0967 -0.3345 -2.6162 17 6 6.3138 1.3915 -2.1923 18 7 6.7057 2.2382 -1.2774 19 14 6.9454 1.5496 -3.9432 20 1 5.8004 1.7586 -4.8654 21 1 7.8713 2.7071 -4.0328 22 1 7.6669 0.3085 -4.3231 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.5671 -2.6181 0.2629 31 1 0.5785 -2.2813 1.7204 32 1 4.3030 -2.9079 0.9675 33 1 4.4736 -2.2575 2.6217 34 1 4.3589 -2.4985 -1.2886 35 1 2.6626 -2.1156 -0.9091 36 1 3.5309 -1.1779 -2.1480 37 1 7.3249 2.9486 -1.5074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688221167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:07 Heat of formation + Delta-G solvation = -77.699322 kcal Electronic energy + Delta-G solvation = -18984.027172 eV Core-core repulsion = 16147.717956 eV Total energy + Delta-G solvation = -2836.309216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04369 -37.11787 -35.26477 -33.46685 -32.49531 -29.80975 -28.44487 -26.65194 -26.15338 -25.56043 -22.53864 -21.39016 -19.98236 -18.40261 -16.77082 -16.20605 -15.71892 -15.55705 -15.06608 -14.18149 -14.13094 -13.62209 -13.20529 -13.12914 -12.42015 -12.36284 -12.22408 -11.90958 -11.72787 -11.66769 -11.34332 -11.05348 -11.03151 -10.91732 -10.71005 -10.31686 -10.24418 -10.08225 -9.91423 -9.85685 -9.30767 -8.87978 -7.64155 -7.26953 -6.24175 -4.69823 3.12006 3.17781 3.18843 4.02164 4.20907 4.48486 4.54782 4.94555 5.11862 5.20907 5.44793 5.46946 5.60189 5.65705 5.70992 5.76582 5.89482 5.99747 6.05237 6.07547 6.19943 6.25056 6.31198 6.36485 6.44202 6.51683 6.59249 6.66749 6.89244 7.09867 7.22976 7.39659 7.56470 8.08564 8.30205 8.97561 9.35300 10.51628 10.70218 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.008039 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.228461 B = 3482.187134 C = 3747.880649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.127 4.127 5 H 0.081 0.919 6 C 0.049 3.951 7 O -0.385 6.385 8 C 0.035 3.965 9 C 0.122 3.878 10 H 0.106 0.894 11 N -0.633 5.633 12 C 0.094 3.906 13 C 0.561 3.439 14 O -0.575 6.575 15 C -0.542 4.542 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.765 5.765 19 Si 0.905 3.095 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -6.017 0.414 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.147 4.147 5 H 0.099 0.901 6 C -0.028 4.028 7 O -0.304 6.304 8 C -0.043 4.043 9 C 0.016 3.984 10 H 0.124 0.876 11 N -0.371 5.371 12 C -0.050 4.050 13 C 0.368 3.632 14 O -0.459 6.459 15 C -0.578 4.578 16 H 0.089 0.911 17 C -0.132 4.132 18 N -0.394 5.394 19 Si 0.729 3.271 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.794 -5.572 1.083 10.467 hybrid contribution 0.310 0.148 -1.082 1.136 sum -8.484 -5.424 0.001 10.069 Atomic orbital electron populations 1.21910 0.96395 1.00800 1.01328 1.21097 0.93838 0.97463 0.97789 1.21970 1.05047 0.94352 0.99747 1.23167 0.96592 0.95515 0.99418 0.90068 1.23772 0.92450 0.91507 0.95035 1.88806 1.16699 1.62946 1.61905 1.23654 0.85820 0.94510 1.00274 1.21925 0.92706 0.96255 0.87499 0.87613 1.47932 1.49894 1.33161 1.06125 1.21567 0.97397 0.93036 0.93028 1.18157 0.76910 0.78453 0.89678 1.90607 1.60413 1.43661 1.51170 1.20951 1.28366 1.14729 0.93802 0.91112 1.25713 0.94855 0.94522 0.98090 1.69999 1.24484 1.11497 1.33372 0.86476 0.79131 0.78335 0.83109 1.19265 1.20563 1.19291 0.93214 0.92975 0.93305 0.89622 0.88980 0.93778 0.94301 0.92111 0.89760 0.91919 0.89989 0.94953 0.93114 0.91234 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.99 37.16 0.33 -1.56 16 2 C -0.08 -1.34 1.94 -90.62 -0.18 -1.51 16 3 C -0.15 -2.93 8.95 37.16 0.33 -2.59 16 4 C -0.13 -2.04 2.49 -88.42 -0.22 -2.26 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 6 C 0.05 0.70 5.76 38.40 0.22 0.92 16 7 O -0.38 -6.36 11.52 -35.23 -0.41 -6.77 16 8 C 0.04 0.60 7.19 37.73 0.27 0.87 16 9 C 0.12 2.34 2.86 -66.40 -0.19 2.15 16 10 H 0.11 2.32 6.98 -51.93 -0.36 1.95 16 11 N -0.63 -13.45 1.72 -173.84 -0.30 -13.75 16 12 C 0.09 1.67 6.97 59.85 0.42 2.08 16 13 C 0.56 14.97 5.74 -12.99 -0.07 14.90 16 14 O -0.58 -17.53 13.48 5.19 0.07 -17.46 16 15 C -0.54 -14.56 8.73 -35.63 -0.31 -14.87 16 16 H 0.07 1.75 6.12 -52.49 -0.32 1.42 16 17 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 18 N -0.77 -22.19 11.83 55.55 0.66 -21.53 16 19 Si 0.90 19.64 29.56 -169.99 -5.02 14.61 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.55 7.28 -51.92 -0.38 0.17 16 26 H 0.09 1.45 4.52 -51.93 -0.23 1.21 16 27 H 0.09 2.18 4.02 -51.93 -0.21 1.97 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.83 5.83 -51.92 -0.30 0.53 16 31 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.06 1.08 7.07 -51.93 -0.37 0.71 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.05 0.77 3.97 -51.93 -0.21 0.57 16 36 H 0.07 1.27 6.40 -51.93 -0.33 0.94 16 37 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -31.03 279.92 -5.49 -36.52 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.22 Total: 3.73 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.51 Total: 0.41 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.36 Total: -35.28 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.34 Total: -24.23 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.03 -5.49 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.176 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds