Wall clock time and date at job start Mon Mar 30 2020 04:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46540 * 2 1 4 4 C 1.52999 * 109.47011 * 119.99224 * 2 1 3 5 5 H 1.08995 * 110.83213 * 297.45560 * 4 2 1 6 6 C 1.55343 * 111.00609 * 61.24194 * 4 2 1 7 7 O 1.44376 * 103.50563 * 155.20624 * 6 4 2 8 8 C 1.43753 * 106.97328 * 319.90671 * 7 6 4 9 9 C 1.54100 * 107.28974 * 26.51104 * 8 7 6 10 10 H 1.08998 * 110.48721 * 116.78331 * 9 8 7 11 11 N 1.46499 * 110.48704 * 239.29121 * 9 8 7 12 12 C 1.46502 * 119.99959 * 53.80018 * 11 9 8 13 13 C 1.34778 * 120.00492 * 233.79438 * 11 9 8 14 14 O 1.21693 * 119.99629 * 0.02562 * 13 11 9 15 15 C 1.46377 * 120.00439 * 180.02562 * 13 11 9 16 16 H 1.08001 * 119.99564 * 359.73039 * 15 13 11 17 17 C 1.40046 * 120.00038 * 180.02562 * 15 13 11 18 18 N 1.30666 * 119.99792 * 359.72778 * 17 15 13 19 19 Si 1.86795 * 119.99902 * 179.72505 * 17 15 13 20 20 H 1.48496 * 109.47197 * 60.00193 * 19 17 15 21 21 H 1.48498 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47149 * 300.00100 * 19 17 15 23 23 H 1.08994 * 109.47776 * 299.99961 * 1 2 3 24 24 H 1.08999 * 109.47284 * 60.00879 * 1 2 3 25 25 H 1.09008 * 109.46633 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47313 * 240.00227 * 2 1 3 27 27 H 1.09000 * 109.47047 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47064 * 299.99465 * 3 2 1 29 29 H 1.08996 * 109.47572 * 59.99537 * 3 2 1 30 30 H 1.09010 * 110.64257 * 36.68251 * 6 4 2 31 31 H 1.08999 * 110.58917 * 273.69970 * 6 4 2 32 32 H 1.08998 * 109.87798 * 267.09053 * 8 7 6 33 33 H 1.08994 * 109.87995 * 145.93788 * 8 7 6 34 34 H 1.09000 * 109.47482 * 264.67507 * 12 11 9 35 35 H 1.08998 * 109.47268 * 24.67326 * 12 11 9 36 36 H 1.09004 * 109.47400 * 144.67188 * 12 11 9 37 37 H 0.97004 * 119.99977 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7264 -0.1991 2.1533 6 6 1.5678 -2.2009 1.2699 7 8 2.5557 -2.8586 2.0921 8 6 3.8330 -2.3003 1.7409 9 6 3.5797 -0.8770 1.2073 10 1 4.0557 -0.1378 1.8515 11 7 4.0707 -0.7497 -0.1670 12 6 3.6274 -1.6959 -1.1939 13 6 4.9302 0.2380 -0.4869 14 8 5.2987 1.0238 0.3662 15 6 5.4204 0.3655 -1.8602 16 1 5.0967 -0.3345 -2.6162 17 6 6.3138 1.3915 -2.1923 18 7 6.7057 2.2382 -1.2774 19 14 6.9454 1.5496 -3.9432 20 1 5.8004 1.7586 -4.8654 21 1 7.8713 2.7071 -4.0328 22 1 7.6669 0.3085 -4.3231 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.5671 -2.6181 0.2629 31 1 0.5785 -2.2813 1.7204 32 1 4.3030 -2.9079 0.9675 33 1 4.4736 -2.2575 2.6217 34 1 4.3589 -2.4985 -1.2886 35 1 2.6626 -2.1156 -0.9091 36 1 3.5309 -1.1779 -2.1480 37 1 7.3249 2.9486 -1.5074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688221167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:06 Heat of formation + Delta-G solvation = -98.514638 kcal Electronic energy + Delta-G solvation = -18984.929792 eV Core-core repulsion = 16147.717956 eV Total energy + Delta-G solvation = -2837.211835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.50201 -38.90697 -36.69572 -35.16981 -34.55757 -31.30840 -29.78104 -28.17057 -27.88723 -27.13538 -23.82729 -23.06532 -21.45093 -20.01315 -18.52858 -17.87665 -17.32638 -17.10809 -16.54753 -15.88281 -15.66292 -15.21075 -14.58298 -14.41819 -14.11117 -13.77130 -13.67711 -13.46010 -13.31161 -13.02546 -12.99615 -12.73545 -12.59286 -12.40419 -12.24007 -12.07421 -12.02415 -11.41933 -11.35375 -11.22942 -10.88117 -10.59610 -9.73009 -9.02770 -8.26103 -6.80674 1.39665 1.42110 1.53110 2.23257 2.49074 2.73594 3.06189 3.53149 3.70306 3.83195 3.93126 4.17066 4.18304 4.28262 4.36303 4.47397 4.60792 4.70293 4.80087 4.80696 4.83833 4.91460 4.94136 5.03112 5.06498 5.14271 5.19334 5.35441 5.37907 5.56853 5.63572 5.74085 5.84925 6.16231 6.45415 6.91134 7.44978 8.51546 8.70779 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.008039 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.228461 B = 3482.187134 C = 3747.880649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.152 4.152 4 C -0.121 4.121 5 H 0.083 0.917 6 C 0.054 3.946 7 O -0.388 6.388 8 C 0.046 3.954 9 C 0.114 3.886 10 H 0.065 0.935 11 N -0.629 5.629 12 C 0.092 3.908 13 C 0.553 3.447 14 O -0.626 6.626 15 C -0.567 4.567 16 H 0.089 0.911 17 C 0.032 3.968 18 N -0.819 5.819 19 Si 0.987 3.013 20 H -0.254 1.254 21 H -0.278 1.278 22 H -0.256 1.256 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.045 -7.884 -0.974 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.209 4.209 4 C -0.141 4.141 5 H 0.102 0.898 6 C -0.022 4.022 7 O -0.307 6.307 8 C -0.032 4.032 9 C 0.009 3.991 10 H 0.083 0.917 11 N -0.365 5.365 12 C -0.050 4.050 13 C 0.359 3.641 14 O -0.513 6.513 15 C -0.603 4.603 16 H 0.107 0.893 17 C -0.183 4.183 18 N -0.449 5.449 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.180 1.180 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.788 -7.495 -0.305 13.139 hybrid contribution 0.864 0.720 -0.575 1.263 sum -9.924 -6.775 -0.879 12.048 Atomic orbital electron populations 1.21838 0.93137 1.02686 1.01986 1.21045 0.96419 0.94898 0.97321 1.21900 1.01831 0.97137 1.00039 1.23123 0.93886 0.97420 0.99650 0.89837 1.23925 0.93123 0.89232 0.95916 1.88815 1.16514 1.62906 1.62468 1.23460 0.86554 0.92898 1.00325 1.21999 0.94832 0.96600 0.85699 0.91669 1.47667 1.48696 1.32387 1.07709 1.21723 0.99128 0.92297 0.91867 1.18380 0.77312 0.78889 0.89489 1.90560 1.62471 1.45881 1.52437 1.21456 1.28850 1.15486 0.94515 0.89273 1.26880 0.94654 0.93665 1.03131 1.70181 1.25708 1.12617 1.36404 0.85215 0.78745 0.78659 0.76628 1.17820 1.20271 1.17989 0.92562 0.92453 0.90749 0.90298 0.93812 0.93677 0.93806 0.90786 0.86556 0.91770 0.89725 0.94187 0.89931 0.91722 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.99 71.98 0.65 -2.43 16 2 C -0.08 -2.38 1.94 -10.79 -0.02 -2.40 16 3 C -0.15 -5.86 8.95 71.98 0.64 -5.21 16 4 C -0.12 -3.68 2.49 -9.37 -0.02 -3.71 16 5 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 6 C 0.05 1.33 5.76 72.79 0.42 1.75 16 7 O -0.39 -11.72 11.52 -148.98 -1.72 -13.44 16 8 C 0.05 1.51 7.19 72.35 0.52 2.03 16 9 C 0.11 4.42 2.86 45.98 0.13 4.55 16 10 H 0.06 3.04 6.98 -2.39 -0.02 3.03 16 11 N -0.63 -27.00 1.72 -822.13 -1.41 -28.41 16 12 C 0.09 3.15 6.97 127.77 0.89 4.04 16 13 C 0.55 30.66 5.74 86.36 0.50 31.15 16 14 O -0.63 -40.56 13.48 -4.33 -0.06 -40.62 16 15 C -0.57 -31.01 8.73 24.83 0.22 -30.79 16 16 H 0.09 4.37 6.12 -2.91 -0.02 4.35 16 17 C 0.03 1.75 5.50 85.30 0.47 2.22 16 18 N -0.82 -49.53 11.83 21.83 0.26 -49.28 16 19 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 20 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.29 7.28 -2.38 -0.02 1.28 16 26 H 0.08 2.50 4.52 -2.39 -0.01 2.49 16 27 H 0.04 2.15 4.02 -2.39 -0.01 2.14 16 28 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.67 5.83 -2.38 -0.01 1.65 16 31 H 0.12 2.23 8.06 -2.39 -0.02 2.21 16 32 H 0.06 2.12 7.07 -2.39 -0.02 2.10 16 33 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.04 1.31 8.00 -2.39 -0.02 1.29 16 35 H 0.08 2.26 3.97 -2.39 -0.01 2.25 16 36 H 0.06 2.27 6.40 -2.38 -0.02 2.26 16 37 H 0.27 15.05 8.29 -92.71 -0.77 14.29 16 Total: -1.00 -71.16 279.92 4.56 -66.60 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.07 Total: 21.46 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.39 Total: 1.20 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.15 Total: -77.68 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -1.77 Total: -54.06 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -71.16 4.56 -66.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.912 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds