Wall clock time and date at job start Mon Mar 30 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47066 * 2 1 4 4 C 1.53007 * 109.46696 * 119.99523 * 2 1 3 5 5 H 1.09004 * 110.82711 * 309.19668 * 4 2 1 6 6 C 1.54990 * 110.90421 * 185.54881 * 4 2 1 7 7 O 1.44387 * 103.48966 * 204.78132 * 6 4 2 8 8 C 1.43741 * 106.97442 * 40.05712 * 7 6 4 9 9 C 1.54101 * 107.29508 * 333.48959 * 8 7 6 10 10 H 1.09002 * 110.48923 * 243.34841 * 9 8 7 11 11 N 1.46500 * 110.48499 * 120.83779 * 9 8 7 12 12 C 1.46505 * 120.00187 * 306.48130 * 11 9 8 13 13 C 1.34780 * 119.99983 * 126.49016 * 11 9 8 14 14 O 1.21681 * 120.00052 * 359.97438 * 13 11 9 15 15 C 1.46378 * 120.00191 * 180.02562 * 13 11 9 16 16 H 1.08001 * 119.99785 * 5.62345 * 15 13 11 17 17 C 1.40047 * 120.00200 * 185.62251 * 15 13 11 18 18 N 1.30669 * 119.99896 * 354.76360 * 17 15 13 19 19 Si 1.86796 * 120.00179 * 174.76061 * 17 15 13 20 20 H 1.48503 * 109.47022 * 94.99587 * 19 17 15 21 21 H 1.48500 * 109.47436 * 214.99596 * 19 17 15 22 22 H 1.48505 * 109.47070 * 334.99986 * 19 17 15 23 23 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47887 * 300.00770 * 1 2 3 25 25 H 1.09005 * 109.46773 * 60.00650 * 1 2 3 26 26 H 1.08996 * 109.47335 * 239.99749 * 2 1 3 27 27 H 1.08997 * 109.47115 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47178 * 299.99669 * 3 2 1 29 29 H 1.08999 * 109.46973 * 59.99254 * 3 2 1 30 30 H 1.08997 * 110.62145 * 86.27650 * 6 4 2 31 31 H 1.08999 * 110.62197 * 323.27859 * 6 4 2 32 32 H 1.08994 * 109.87876 * 92.91336 * 8 7 6 33 33 H 1.08997 * 109.87942 * 213.91560 * 8 7 6 34 34 H 1.09001 * 109.46859 * 93.83971 * 12 11 9 35 35 H 1.08995 * 109.46948 * 213.83742 * 12 11 9 36 36 H 1.08996 * 109.46649 * 333.84150 * 12 11 9 37 37 H 0.96999 * 120.00077 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.5620 -0.3273 2.1464 6 6 3.5829 -0.6205 1.3550 7 8 3.9419 -1.7713 2.1498 8 6 3.1137 -2.8604 1.7093 9 6 1.8218 -2.2494 1.1328 10 1 0.9580 -2.5576 1.7219 11 7 1.6508 -2.6403 -0.2687 12 6 2.7293 -2.4043 -1.2318 13 6 0.5013 -3.2168 -0.6721 14 8 -0.3944 -3.4130 0.1278 15 6 0.3306 -3.6078 -2.0723 16 1 1.1566 -3.5186 -2.7624 17 6 -0.9037 -4.0977 -2.5171 18 7 -1.8714 -4.3023 -1.6633 19 14 -1.1666 -4.4586 -4.3310 20 1 -0.9022 -5.8962 -4.5930 21 1 -2.5683 -4.1375 -4.7015 22 1 -0.2381 -3.6290 -5.1404 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3635 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 3.8739 0.3006 1.8599 31 1 4.0400 -0.6787 0.3672 32 1 3.6306 -3.4305 0.9375 33 1 2.8754 -3.5092 2.5521 34 1 3.3483 -3.2981 -1.3102 35 1 2.3012 -2.1722 -2.2069 36 1 3.3407 -1.5673 -0.8947 37 1 -2.7262 -4.6420 -1.9713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688221168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:08 Heat of formation + Delta-G solvation = -79.490424 kcal Electronic energy + Delta-G solvation = -18964.876475 eV Core-core repulsion = 16128.489591 eV Total energy + Delta-G solvation = -2836.386884 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03624 -37.08415 -35.30031 -33.48269 -32.49301 -29.81306 -28.45810 -26.67450 -26.15004 -25.55662 -22.58212 -21.38605 -19.94703 -18.41746 -16.76981 -16.19700 -15.73742 -15.54618 -15.06386 -14.18082 -14.11854 -13.59631 -13.19116 -13.15542 -12.43982 -12.39723 -12.20282 -11.93658 -11.73530 -11.65828 -11.34342 -11.05847 -11.02057 -10.96017 -10.73831 -10.32625 -10.23116 -10.10600 -9.97528 -9.85111 -9.30435 -8.88749 -7.63175 -7.26835 -6.24746 -4.69027 3.09917 3.18037 3.20926 4.02250 4.21048 4.48003 4.55717 4.95151 5.12367 5.20309 5.44205 5.46746 5.60301 5.65931 5.70101 5.76561 5.89475 5.99126 6.03727 6.06913 6.18823 6.23735 6.28888 6.35188 6.42184 6.51684 6.58812 6.64259 6.89859 7.10015 7.12108 7.39939 7.56805 8.08802 8.30880 8.98024 9.35945 10.51988 10.70670 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.008075 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.002489 B = 3466.823000 C = 3733.859913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.127 4.127 5 H 0.081 0.919 6 C 0.049 3.951 7 O -0.385 6.385 8 C 0.035 3.965 9 C 0.123 3.877 10 H 0.106 0.894 11 N -0.632 5.632 12 C 0.093 3.907 13 C 0.561 3.439 14 O -0.576 6.576 15 C -0.542 4.542 16 H 0.071 0.929 17 C 0.089 3.911 18 N -0.765 5.765 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 7.451 1.126 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.147 4.147 5 H 0.099 0.901 6 C -0.027 4.027 7 O -0.304 6.304 8 C -0.043 4.043 9 C 0.016 3.984 10 H 0.124 0.876 11 N -0.370 5.370 12 C -0.051 4.051 13 C 0.367 3.633 14 O -0.458 6.458 15 C -0.579 4.579 16 H 0.089 0.911 17 C -0.131 4.131 18 N -0.393 5.393 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.521 7.255 1.756 10.597 hybrid contribution -0.205 -0.165 -1.108 1.139 sum 7.316 7.090 0.648 10.208 Atomic orbital electron populations 1.21851 0.94575 1.04219 0.99852 1.21155 0.96766 0.94440 0.98191 1.21918 1.00243 0.97005 1.01304 1.23104 0.95321 0.96960 0.99317 0.90082 1.23717 0.94387 0.89211 0.95382 1.88806 1.61147 1.20338 1.60095 1.23648 0.91290 0.89891 0.99449 1.21915 0.97966 0.91892 0.86585 0.87624 1.47929 1.17573 1.65893 1.05640 1.21563 0.90687 0.98609 0.94251 1.18198 0.79069 0.76646 0.89371 1.90596 1.40785 1.59004 1.55461 1.20974 0.98013 1.45284 0.93592 0.91074 1.25711 0.95578 0.93207 0.98652 1.70015 1.02884 1.31795 1.34648 0.86416 0.78217 0.79177 0.83346 1.19847 1.20412 1.18827 0.89895 0.94201 0.93629 0.89128 0.93207 0.92963 0.93238 0.89746 0.92117 0.91956 0.90001 0.95013 0.91038 0.93169 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.04 37.16 0.34 -2.39 16 2 C -0.09 -1.39 1.94 -90.61 -0.18 -1.57 16 3 C -0.15 -1.88 8.89 37.16 0.33 -1.55 16 4 C -0.13 -2.04 2.49 -88.61 -0.22 -2.26 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 6 C 0.05 0.71 5.44 38.21 0.21 0.91 16 7 O -0.38 -6.37 11.52 -35.23 -0.41 -6.78 16 8 C 0.04 0.60 7.19 37.73 0.27 0.87 16 9 C 0.12 2.35 2.94 -66.40 -0.20 2.15 16 10 H 0.11 2.32 6.98 -51.93 -0.36 1.95 16 11 N -0.63 -13.45 1.74 -173.84 -0.30 -13.76 16 12 C 0.09 1.65 6.97 59.85 0.42 2.07 16 13 C 0.56 15.01 6.18 -12.98 -0.08 14.93 16 14 O -0.58 -17.59 13.63 5.21 0.07 -17.52 16 15 C -0.54 -14.59 8.67 -35.63 -0.31 -14.90 16 16 H 0.07 1.76 6.19 -52.49 -0.32 1.44 16 17 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 18 N -0.76 -22.20 11.85 55.55 0.66 -21.55 16 19 Si 0.90 19.63 29.56 -169.99 -5.03 14.61 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 H 0.08 1.92 5.15 -51.93 -0.27 1.66 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.56 4.34 -51.93 -0.23 1.34 16 27 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.06 0.83 5.84 -51.93 -0.30 0.53 16 32 H 0.06 1.07 7.01 -51.93 -0.36 0.71 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.55 7.95 -51.93 -0.41 0.13 16 35 H 0.07 1.31 6.39 -51.93 -0.33 0.98 16 36 H 0.05 0.77 4.07 -51.93 -0.21 0.55 16 37 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -31.15 281.09 -5.54 -36.70 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.26 Total: 3.51 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.49 Total: 0.55 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.36 Total: -35.30 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.33 Total: -24.30 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.15 -5.54 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.795 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds