Wall clock time and date at job start Mon Mar 30 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47066 * 2 1 4 4 C 1.53007 * 109.46696 * 119.99523 * 2 1 3 5 5 H 1.09004 * 110.82711 * 309.19668 * 4 2 1 6 6 C 1.54990 * 110.90421 * 185.54881 * 4 2 1 7 7 O 1.44387 * 103.48966 * 204.78132 * 6 4 2 8 8 C 1.43741 * 106.97442 * 40.05712 * 7 6 4 9 9 C 1.54101 * 107.29508 * 333.48959 * 8 7 6 10 10 H 1.09002 * 110.48923 * 243.34841 * 9 8 7 11 11 N 1.46500 * 110.48499 * 120.83779 * 9 8 7 12 12 C 1.46505 * 120.00187 * 306.48130 * 11 9 8 13 13 C 1.34780 * 119.99983 * 126.49016 * 11 9 8 14 14 O 1.21681 * 120.00052 * 359.97438 * 13 11 9 15 15 C 1.46378 * 120.00191 * 180.02562 * 13 11 9 16 16 H 1.08001 * 119.99785 * 5.62345 * 15 13 11 17 17 C 1.40047 * 120.00200 * 185.62251 * 15 13 11 18 18 N 1.30669 * 119.99896 * 354.76360 * 17 15 13 19 19 Si 1.86796 * 120.00179 * 174.76061 * 17 15 13 20 20 H 1.48503 * 109.47022 * 94.99587 * 19 17 15 21 21 H 1.48500 * 109.47436 * 214.99596 * 19 17 15 22 22 H 1.48505 * 109.47070 * 334.99986 * 19 17 15 23 23 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47887 * 300.00770 * 1 2 3 25 25 H 1.09005 * 109.46773 * 60.00650 * 1 2 3 26 26 H 1.08996 * 109.47335 * 239.99749 * 2 1 3 27 27 H 1.08997 * 109.47115 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47178 * 299.99669 * 3 2 1 29 29 H 1.08999 * 109.46973 * 59.99254 * 3 2 1 30 30 H 1.08997 * 110.62145 * 86.27650 * 6 4 2 31 31 H 1.08999 * 110.62197 * 323.27859 * 6 4 2 32 32 H 1.08994 * 109.87876 * 92.91336 * 8 7 6 33 33 H 1.08997 * 109.87942 * 213.91560 * 8 7 6 34 34 H 1.09001 * 109.46859 * 93.83971 * 12 11 9 35 35 H 1.08995 * 109.46948 * 213.83742 * 12 11 9 36 36 H 1.08996 * 109.46649 * 333.84150 * 12 11 9 37 37 H 0.96999 * 120.00077 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.5620 -0.3273 2.1464 6 6 3.5829 -0.6205 1.3550 7 8 3.9419 -1.7713 2.1498 8 6 3.1137 -2.8604 1.7093 9 6 1.8218 -2.2494 1.1328 10 1 0.9580 -2.5576 1.7219 11 7 1.6508 -2.6403 -0.2687 12 6 2.7293 -2.4043 -1.2318 13 6 0.5013 -3.2168 -0.6721 14 8 -0.3944 -3.4130 0.1278 15 6 0.3306 -3.6078 -2.0723 16 1 1.1566 -3.5186 -2.7624 17 6 -0.9037 -4.0977 -2.5171 18 7 -1.8714 -4.3023 -1.6633 19 14 -1.1666 -4.4586 -4.3310 20 1 -0.9022 -5.8962 -4.5930 21 1 -2.5683 -4.1375 -4.7015 22 1 -0.2381 -3.6290 -5.1404 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3635 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 3.8739 0.3006 1.8599 31 1 4.0400 -0.6787 0.3672 32 1 3.6306 -3.4305 0.9375 33 1 2.8754 -3.5092 2.5521 34 1 3.3483 -3.2981 -1.3102 35 1 2.3012 -2.1722 -2.2069 36 1 3.3407 -1.5673 -0.8947 37 1 -2.7262 -4.6420 -1.9713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688221168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:08 Heat of formation + Delta-G solvation = -100.409344 kcal Electronic energy + Delta-G solvation = -18965.783587 eV Core-core repulsion = 16128.489591 eV Total energy + Delta-G solvation = -2837.293996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48858 -38.89185 -36.71546 -35.19643 -34.56259 -31.31257 -29.79205 -28.17938 -27.87567 -27.14099 -23.86846 -23.06845 -21.40946 -20.02678 -18.53157 -17.87851 -17.31438 -17.12227 -16.54426 -15.87462 -15.64468 -15.19405 -14.59112 -14.42427 -14.13269 -13.82188 -13.64180 -13.45477 -13.33977 -13.02179 -12.99983 -12.76654 -12.58401 -12.41274 -12.27135 -12.09715 -11.99854 -11.44702 -11.37743 -11.20240 -10.90436 -10.59237 -9.72978 -9.03376 -8.27208 -6.80532 1.39271 1.39942 1.55217 2.22995 2.48768 2.73276 3.06269 3.52555 3.70884 3.83505 3.92852 4.17053 4.18512 4.28182 4.35995 4.45476 4.61404 4.69971 4.79746 4.79996 4.84094 4.90039 4.93585 5.02825 5.07439 5.13025 5.18692 5.34981 5.37609 5.54985 5.61126 5.73993 5.84872 6.16120 6.45040 6.90970 7.44739 8.51262 8.70492 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.008075 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.002489 B = 3466.823000 C = 3733.859913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.121 4.121 5 H 0.083 0.917 6 C 0.054 3.946 7 O -0.388 6.388 8 C 0.046 3.954 9 C 0.115 3.885 10 H 0.065 0.935 11 N -0.628 5.628 12 C 0.092 3.908 13 C 0.551 3.449 14 O -0.627 6.627 15 C -0.566 4.566 16 H 0.089 0.911 17 C 0.032 3.968 18 N -0.820 5.820 19 Si 0.987 3.013 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.247 1.247 23 H 0.029 0.971 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 9.028 -0.116 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.141 4.141 5 H 0.101 0.899 6 C -0.021 4.021 7 O -0.307 6.307 8 C -0.032 4.032 9 C 0.009 3.991 10 H 0.083 0.917 11 N -0.364 5.364 12 C -0.051 4.051 13 C 0.357 3.643 14 O -0.514 6.514 15 C -0.603 4.603 16 H 0.107 0.893 17 C -0.183 4.183 18 N -0.449 5.449 19 Si 0.807 3.193 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.170 1.170 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.935 8.860 0.519 13.322 hybrid contribution -0.917 -0.622 -0.639 1.279 sum 9.018 8.239 -0.120 12.215 Atomic orbital electron populations 1.21778 0.96979 1.00857 1.00493 1.21108 0.94604 0.96969 0.97501 1.21845 1.01662 0.94033 1.02111 1.23058 0.97298 0.94189 0.99541 0.89855 1.23872 0.92263 0.89634 0.96365 1.88815 1.60687 1.20645 1.60586 1.23453 0.90145 0.90173 0.99478 1.21990 0.97550 0.94711 0.84874 0.91709 1.47660 1.16913 1.64683 1.07129 1.21715 0.89847 1.00244 0.93249 1.18441 0.79904 0.76598 0.89339 1.90550 1.43099 1.61059 1.56674 1.21471 0.99027 1.45568 0.94219 0.89271 1.26885 0.94944 0.92317 1.04170 1.70191 1.03717 1.33368 1.37650 0.85152 0.78397 0.79374 0.76342 1.19002 1.20080 1.16976 0.95151 0.93118 0.93412 0.90281 0.90811 0.92422 0.92303 0.86545 0.90803 0.91781 0.89724 0.94153 0.91601 0.89998 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.04 71.98 0.65 -4.74 16 2 C -0.08 -2.53 1.94 -10.79 -0.02 -2.55 16 3 C -0.14 -3.03 8.89 71.98 0.64 -2.39 16 4 C -0.12 -3.70 2.49 -9.49 -0.02 -3.72 16 5 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 6 C 0.05 1.34 5.44 72.66 0.40 1.74 16 7 O -0.39 -11.74 11.52 -148.98 -1.72 -13.46 16 8 C 0.05 1.51 7.19 72.35 0.52 2.03 16 9 C 0.11 4.44 2.94 45.98 0.14 4.57 16 10 H 0.06 3.03 6.98 -2.39 -0.02 3.02 16 11 N -0.63 -27.06 1.74 -822.14 -1.43 -28.50 16 12 C 0.09 3.14 6.97 127.77 0.89 4.03 16 13 C 0.55 30.70 6.18 86.36 0.53 31.24 16 14 O -0.63 -40.79 13.63 -4.29 -0.06 -40.85 16 15 C -0.57 -31.08 8.67 24.83 0.22 -30.87 16 16 H 0.09 4.39 6.19 -2.91 -0.02 4.38 16 17 C 0.03 1.76 5.50 85.30 0.47 2.23 16 18 N -0.82 -49.61 11.85 21.83 0.26 -49.35 16 19 Si 0.99 40.47 29.56 68.60 2.03 42.50 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 23 H 0.03 1.46 5.15 -2.39 -0.01 1.45 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.08 2.59 4.34 -2.39 -0.01 2.58 16 27 H 0.07 1.28 7.07 -2.39 -0.02 1.26 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.07 1.67 5.84 -2.39 -0.01 1.65 16 32 H 0.06 2.11 7.01 -2.39 -0.02 2.10 16 33 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.04 1.31 7.95 -2.39 -0.02 1.30 16 35 H 0.07 2.33 6.39 -2.39 -0.02 2.32 16 36 H 0.08 2.25 4.07 -2.39 -0.01 2.24 16 37 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 Total: -1.00 -71.60 281.09 4.55 -67.05 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.07 Total: 21.03 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.41 Total: 1.57 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.17 Total: -77.85 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -1.77 Total: -54.30 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -71.60 4.55 -67.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.357 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds