Wall clock time and date at job start Mon Mar 30 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47044 * 120.00201 * 2 1 3 5 5 H 1.08999 * 110.45811 * 297.39054 * 4 2 1 6 6 C 1.54477 * 110.62574 * 174.71076 * 4 2 1 7 7 O 1.44421 * 104.80416 * 217.32040 * 6 4 2 8 8 C 1.44423 * 105.27799 * 40.50791 * 7 6 4 9 9 C 1.54483 * 104.80202 * 319.49539 * 8 7 6 10 10 H 1.09001 * 110.62573 * 142.68016 * 9 8 7 11 11 N 1.46501 * 110.50943 * 265.32761 * 9 8 7 12 12 C 1.46506 * 119.99787 * 54.64315 * 11 9 8 13 13 C 1.34773 * 120.00484 * 234.64545 * 11 9 8 14 14 O 1.21690 * 119.99327 * 359.97438 * 13 11 9 15 15 C 1.46368 * 120.00286 * 180.02562 * 13 11 9 16 16 H 1.07998 * 120.00425 * 352.70140 * 15 13 11 17 17 C 1.40055 * 120.00068 * 172.71035 * 15 13 11 18 18 N 1.30672 * 119.99870 * 6.04907 * 17 15 13 19 19 Si 1.86798 * 120.00131 * 186.04641 * 17 15 13 20 20 H 1.48496 * 109.46975 * 94.97916 * 19 17 15 21 21 H 1.48501 * 109.47213 * 214.97938 * 19 17 15 22 22 H 1.48504 * 109.46915 * 334.97693 * 19 17 15 23 23 H 1.09008 * 109.47049 * 59.99698 * 1 2 3 24 24 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47271 * 299.99735 * 1 2 3 26 26 H 1.09003 * 109.46797 * 240.00183 * 2 1 3 27 27 H 1.09001 * 109.46601 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47231 * 299.99786 * 3 2 1 29 29 H 1.08999 * 109.46909 * 60.00042 * 3 2 1 30 30 H 1.09000 * 110.37644 * 336.14814 * 6 4 2 31 31 H 1.08996 * 110.37589 * 98.37310 * 6 4 2 32 32 H 1.08996 * 110.37884 * 200.65776 * 8 7 6 33 33 H 1.09005 * 110.37138 * 78.32279 * 8 7 6 34 34 H 1.08998 * 109.46949 * 270.00036 * 12 11 9 35 35 H 1.08998 * 109.46965 * 150.00033 * 12 11 9 36 36 H 1.08998 * 109.46885 * 29.99942 * 12 11 9 37 37 H 0.96996 * 120.00056 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7240 -0.1939 2.1493 6 6 3.5786 -0.8533 1.2113 7 8 3.8518 -2.1514 1.7823 8 6 2.8332 -3.0244 1.2474 9 6 1.5383 -2.1824 1.2734 10 1 0.9269 -2.3910 0.3955 11 7 0.7801 -2.4445 2.4993 12 6 1.4232 -2.2867 3.8062 13 6 -0.5089 -2.8308 2.4249 14 8 -1.0431 -2.9615 1.3393 15 6 -1.2665 -3.0922 3.6497 16 1 -0.7645 -3.0909 4.6059 17 6 -2.6425 -3.3441 3.5816 18 7 -3.2283 -3.4632 2.4196 19 14 -3.6405 -3.5100 5.1520 20 1 -4.2558 -2.2010 5.4880 21 1 -4.7084 -4.5230 4.9551 22 1 -2.7505 -3.9381 6.2610 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.9383 -0.8077 0.1834 31 1 4.0417 -0.0687 1.8096 32 1 2.7235 -3.9088 1.8750 33 1 3.0784 -3.3118 0.2249 34 1 1.8790 -3.2313 4.1031 35 1 0.6772 -1.9950 4.5453 36 1 2.1919 -1.5166 3.7422 37 1 -4.1812 -3.6380 2.3725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688221169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:10 Heat of formation + Delta-G solvation = -91.466800 kcal Electronic energy + Delta-G solvation = -18650.343937 eV Core-core repulsion = 15813.437719 eV Total energy + Delta-G solvation = -2836.906218 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80070 -37.03262 -35.38068 -33.61901 -32.45377 -29.62480 -28.50757 -26.71905 -26.08432 -25.35086 -22.57535 -21.67254 -19.53838 -18.85145 -16.58507 -16.10972 -15.77575 -15.18043 -15.11607 -14.34939 -14.00723 -13.88356 -13.25731 -12.94903 -12.71827 -12.28070 -12.12226 -11.89751 -11.65959 -11.49533 -11.28617 -11.09540 -11.02612 -10.95218 -10.56472 -10.44367 -10.28802 -10.20135 -10.14166 -10.04258 -9.50369 -8.85930 -7.58268 -7.18914 -6.21782 -4.65058 3.12235 3.20089 3.23237 4.06886 4.28868 4.49046 4.53709 4.94780 5.04692 5.18093 5.36069 5.48344 5.59138 5.60780 5.72830 5.78240 5.92715 5.94394 5.98282 6.11055 6.14124 6.18955 6.22422 6.29638 6.40723 6.45843 6.60421 6.64708 6.72005 6.99433 7.12521 7.43783 7.62880 8.14426 8.36950 9.01455 9.41637 10.55553 10.74377 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.007537 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.926665 B = 3714.311430 C = 4151.520126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.129 4.129 5 H 0.086 0.914 6 C 0.050 3.950 7 O -0.378 6.378 8 C 0.033 3.967 9 C 0.123 3.877 10 H 0.109 0.891 11 N -0.635 5.635 12 C 0.104 3.896 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.543 4.543 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.766 5.766 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.496 6.119 -1.479 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.203 4.203 4 C -0.149 4.149 5 H 0.105 0.895 6 C -0.027 4.027 7 O -0.297 6.297 8 C -0.045 4.045 9 C 0.017 3.983 10 H 0.127 0.873 11 N -0.372 5.372 12 C -0.041 4.041 13 C 0.364 3.636 14 O -0.460 6.460 15 C -0.580 4.580 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.183 5.941 -2.021 11.122 hybrid contribution -0.587 0.031 0.765 0.965 sum 8.595 5.972 -1.255 10.541 Atomic orbital electron populations 1.21921 0.93936 1.04362 1.00648 1.21068 0.96884 0.95311 0.96803 1.21865 1.00343 0.96443 1.01628 1.23025 0.94691 0.97773 0.99403 0.89547 1.23434 0.94988 0.86248 0.97994 1.89076 1.51687 1.19562 1.69357 1.23883 0.87498 0.94613 0.98501 1.22028 0.92482 0.91415 0.92361 0.87317 1.47932 1.12596 1.73483 1.03234 1.21333 0.97106 0.99051 0.86577 1.18251 0.78235 0.76459 0.90606 1.90566 1.67989 1.57073 1.30326 1.21001 0.93069 1.51111 0.92774 0.91002 1.25720 0.98122 0.92691 0.96620 1.70020 1.10583 1.34251 1.24625 0.86403 0.79657 0.78454 0.82549 1.19844 1.20463 1.18851 0.93698 0.89970 0.93067 0.91578 0.93081 0.92923 0.92755 0.92724 0.89817 0.88912 0.92499 0.95193 0.91264 0.93629 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.94 37.16 0.33 -2.31 16 2 C -0.08 -1.20 2.26 -90.62 -0.20 -1.40 16 3 C -0.15 -1.73 9.03 37.16 0.34 -1.40 16 4 C -0.13 -2.05 1.85 -89.06 -0.17 -2.22 16 5 H 0.09 1.49 7.12 -51.93 -0.37 1.12 16 6 C 0.05 0.70 6.27 37.93 0.24 0.94 16 7 O -0.38 -6.24 11.21 -35.23 -0.39 -6.63 16 8 C 0.03 0.56 6.78 37.94 0.26 0.82 16 9 C 0.12 2.37 2.63 -66.36 -0.17 2.19 16 10 H 0.11 2.34 5.31 -51.93 -0.28 2.06 16 11 N -0.64 -14.19 2.76 -173.80 -0.48 -14.67 16 12 C 0.10 2.00 9.06 59.85 0.54 2.54 16 13 C 0.56 15.40 7.60 -12.99 -0.10 15.31 16 14 O -0.58 -17.72 13.33 5.20 0.07 -17.65 16 15 C -0.54 -15.04 8.65 -35.63 -0.31 -15.35 16 16 H 0.07 1.85 6.14 -52.49 -0.32 1.52 16 17 C 0.09 2.42 5.49 -17.36 -0.10 2.33 16 18 N -0.77 -22.51 11.86 55.55 0.66 -21.85 16 19 Si 0.90 19.97 29.56 -169.99 -5.03 14.94 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 23 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.08 1.76 5.41 -51.93 -0.28 1.48 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 27 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.68 7.84 -51.93 -0.41 0.28 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.65 8.01 -51.93 -0.42 1.24 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.37 6.20 -51.93 -0.32 1.05 16 36 H 0.04 0.79 6.66 -51.93 -0.35 0.44 16 37 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 292.12 15.07 4.40 4.40 Total: -1.00 -31.67 292.12 -5.75 -37.42 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.64 Total: 2.58 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 0.66 Total: 1.45 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.18 Total: -36.51 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.33 Total: -24.29 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.67 -5.75 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.044 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds