Wall clock time and date at job start Mon Mar 30 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47044 * 120.00201 * 2 1 3 5 5 H 1.08999 * 110.45811 * 297.39054 * 4 2 1 6 6 C 1.54477 * 110.62574 * 174.71076 * 4 2 1 7 7 O 1.44421 * 104.80416 * 217.32040 * 6 4 2 8 8 C 1.44423 * 105.27799 * 40.50791 * 7 6 4 9 9 C 1.54483 * 104.80202 * 319.49539 * 8 7 6 10 10 H 1.09001 * 110.62573 * 142.68016 * 9 8 7 11 11 N 1.46501 * 110.50943 * 265.32761 * 9 8 7 12 12 C 1.46506 * 119.99787 * 54.64315 * 11 9 8 13 13 C 1.34773 * 120.00484 * 234.64545 * 11 9 8 14 14 O 1.21690 * 119.99327 * 359.97438 * 13 11 9 15 15 C 1.46368 * 120.00286 * 180.02562 * 13 11 9 16 16 H 1.07998 * 120.00425 * 352.70140 * 15 13 11 17 17 C 1.40055 * 120.00068 * 172.71035 * 15 13 11 18 18 N 1.30672 * 119.99870 * 6.04907 * 17 15 13 19 19 Si 1.86798 * 120.00131 * 186.04641 * 17 15 13 20 20 H 1.48496 * 109.46975 * 94.97916 * 19 17 15 21 21 H 1.48501 * 109.47213 * 214.97938 * 19 17 15 22 22 H 1.48504 * 109.46915 * 334.97693 * 19 17 15 23 23 H 1.09008 * 109.47049 * 59.99698 * 1 2 3 24 24 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47271 * 299.99735 * 1 2 3 26 26 H 1.09003 * 109.46797 * 240.00183 * 2 1 3 27 27 H 1.09001 * 109.46601 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47231 * 299.99786 * 3 2 1 29 29 H 1.08999 * 109.46909 * 60.00042 * 3 2 1 30 30 H 1.09000 * 110.37644 * 336.14814 * 6 4 2 31 31 H 1.08996 * 110.37589 * 98.37310 * 6 4 2 32 32 H 1.08996 * 110.37884 * 200.65776 * 8 7 6 33 33 H 1.09005 * 110.37138 * 78.32279 * 8 7 6 34 34 H 1.08998 * 109.46949 * 270.00036 * 12 11 9 35 35 H 1.08998 * 109.46965 * 150.00033 * 12 11 9 36 36 H 1.08998 * 109.46885 * 29.99942 * 12 11 9 37 37 H 0.96996 * 120.00056 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7240 -0.1939 2.1493 6 6 3.5786 -0.8533 1.2113 7 8 3.8518 -2.1514 1.7823 8 6 2.8332 -3.0244 1.2474 9 6 1.5383 -2.1824 1.2734 10 1 0.9269 -2.3910 0.3955 11 7 0.7801 -2.4445 2.4993 12 6 1.4232 -2.2867 3.8062 13 6 -0.5089 -2.8308 2.4249 14 8 -1.0431 -2.9615 1.3393 15 6 -1.2665 -3.0922 3.6497 16 1 -0.7645 -3.0909 4.6059 17 6 -2.6425 -3.3441 3.5816 18 7 -3.2283 -3.4632 2.4196 19 14 -3.6405 -3.5100 5.1520 20 1 -4.2558 -2.2010 5.4880 21 1 -4.7084 -4.5230 4.9551 22 1 -2.7505 -3.9381 6.2610 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.9383 -0.8077 0.1834 31 1 4.0417 -0.0687 1.8096 32 1 2.7235 -3.9088 1.8750 33 1 3.0784 -3.3118 0.2249 34 1 1.8790 -3.2313 4.1031 35 1 0.6772 -1.9950 4.5453 36 1 2.1919 -1.5166 3.7422 37 1 -4.1812 -3.6380 2.3725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688221169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:10 Heat of formation + Delta-G solvation = -113.014326 kcal Electronic energy + Delta-G solvation = -18651.278308 eV Core-core repulsion = 15813.437719 eV Total energy + Delta-G solvation = -2837.840589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22618 -38.92289 -36.63112 -35.46037 -34.57387 -31.10869 -29.81957 -28.14400 -27.87792 -27.03345 -23.84887 -23.25953 -21.01566 -20.45706 -18.46634 -17.78839 -17.43461 -16.69763 -16.47203 -15.99169 -15.57091 -15.44815 -14.74138 -14.37634 -14.07715 -13.95601 -13.51798 -13.38827 -13.16138 -13.06410 -13.01449 -12.76560 -12.55194 -12.37483 -12.25016 -12.00387 -11.98697 -11.66313 -11.54820 -11.34466 -10.92626 -10.75720 -9.72138 -9.00749 -8.28401 -6.81716 1.38773 1.39032 1.54663 2.23071 2.46977 2.81932 3.02996 3.52284 3.73532 3.81350 3.94643 4.12092 4.23687 4.37942 4.39571 4.50438 4.60118 4.69638 4.74167 4.78804 4.83029 4.85279 4.90452 5.01233 5.04678 5.07156 5.17840 5.29161 5.37038 5.47841 5.51588 5.75144 5.85795 6.14980 6.47253 6.89570 7.43684 8.49574 8.68798 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.007537 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.926665 B = 3714.311430 C = 4151.520126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.121 4.121 5 H 0.073 0.927 6 C 0.055 3.945 7 O -0.385 6.385 8 C 0.043 3.957 9 C 0.113 3.887 10 H 0.077 0.923 11 N -0.636 5.636 12 C 0.106 3.894 13 C 0.544 3.456 14 O -0.621 6.621 15 C -0.571 4.571 16 H 0.087 0.913 17 C 0.032 3.968 18 N -0.819 5.819 19 Si 0.990 3.010 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.250 1.250 23 H 0.061 0.939 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 7.294 -0.496 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 C -0.195 4.195 4 C -0.141 4.141 5 H 0.091 0.909 6 C -0.021 4.021 7 O -0.304 6.304 8 C -0.035 4.035 9 C 0.008 3.992 10 H 0.096 0.904 11 N -0.372 5.372 12 C -0.037 4.037 13 C 0.349 3.651 14 O -0.508 6.508 15 C -0.608 4.608 16 H 0.105 0.895 17 C -0.183 4.183 18 N -0.448 5.448 19 Si 0.810 3.190 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.173 1.173 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.029 7.134 -1.025 13.175 hybrid contribution -1.090 -0.318 0.401 1.204 sum 9.939 6.816 -0.624 12.068 Atomic orbital electron populations 1.21827 0.96664 1.01192 1.00559 1.21056 0.94361 0.97562 0.96593 1.21805 1.01808 0.93854 1.02078 1.22936 0.96524 0.95147 0.99511 0.90857 1.23607 0.92897 0.85704 0.99936 1.89071 1.50992 1.20482 1.69816 1.23711 0.86422 0.93910 0.99470 1.22209 0.92662 0.94541 0.89785 0.90447 1.47771 1.11570 1.72372 1.05466 1.21402 0.97205 1.00189 0.84887 1.18545 0.79945 0.76412 0.90157 1.90526 1.69685 1.58895 1.31649 1.21499 0.94123 1.51621 0.93508 0.89501 1.26900 0.99276 0.91502 1.00659 1.70182 1.11247 1.35605 1.27771 0.85114 0.77697 0.78774 0.77415 1.18912 1.19806 1.17276 0.91967 0.94606 0.94893 0.90487 0.90611 0.91761 0.93134 0.90341 0.87211 0.90126 0.90436 0.94469 0.91967 0.91188 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 8.94 71.98 0.64 -4.58 16 2 C -0.08 -2.15 2.26 -10.79 -0.02 -2.17 16 3 C -0.14 -2.86 9.03 71.98 0.65 -2.21 16 4 C -0.12 -3.69 1.85 -9.78 -0.02 -3.71 16 5 H 0.07 2.43 7.12 -2.39 -0.02 2.42 16 6 C 0.05 1.33 6.27 72.48 0.45 1.78 16 7 O -0.38 -11.59 11.21 -148.98 -1.67 -13.26 16 8 C 0.04 1.41 6.78 72.49 0.49 1.90 16 9 C 0.11 4.40 2.63 46.01 0.12 4.52 16 10 H 0.08 3.51 5.31 -2.39 -0.01 3.50 16 11 N -0.64 -29.05 2.76 -822.00 -2.27 -31.32 16 12 C 0.11 4.05 9.06 127.77 1.16 5.21 16 13 C 0.54 31.28 7.60 86.36 0.66 31.94 16 14 O -0.62 -40.49 13.33 -4.32 -0.06 -40.55 16 15 C -0.57 -32.39 8.65 24.83 0.21 -32.17 16 16 H 0.09 4.49 6.14 -2.91 -0.02 4.47 16 17 C 0.03 1.78 5.49 85.31 0.47 2.25 16 18 N -0.82 -49.93 11.86 21.84 0.26 -49.67 16 19 Si 0.99 41.27 29.56 68.60 2.03 43.29 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 23 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 24 H 0.03 1.62 5.41 -2.39 -0.01 1.61 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.99 8.09 -2.39 -0.02 1.98 16 27 H 0.07 1.22 7.45 -2.39 -0.02 1.21 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.59 7.84 -2.39 -0.02 1.57 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.84 8.01 -2.39 -0.02 2.82 16 33 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 2.44 6.20 -2.39 -0.01 2.42 16 36 H 0.07 2.30 6.66 -2.39 -0.02 2.28 16 37 H 0.27 15.12 8.29 -92.71 -0.77 14.36 16 Total: -1.00 -72.33 292.12 4.16 -68.17 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.05 Total: 20.58 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 4.82 Total: 2.75 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.01 Total: -80.99 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -1.73 Total: -53.81 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -72.33 4.16 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.843 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds