Wall clock time and date at job start Mon Mar 30 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 C 1.53001 * 109.46750 * 119.99585 * 2 1 3 5 5 H 1.08995 * 110.56782 * 302.68154 * 4 2 1 6 6 C 1.54490 * 110.50772 * 65.35727 * 4 2 1 7 7 O 1.44427 * 104.79963 * 142.62010 * 6 4 2 8 8 C 1.44420 * 105.27711 * 319.49129 * 7 6 4 9 9 C 1.54478 * 104.80832 * 40.51114 * 8 7 6 10 10 H 1.08999 * 110.51413 * 217.24255 * 9 8 7 11 11 N 1.46499 * 110.51164 * 94.66404 * 9 8 7 12 12 C 1.46499 * 120.00225 * 301.45589 * 11 9 8 13 13 C 1.34780 * 119.99546 * 121.46151 * 11 9 8 14 14 O 1.21684 * 119.99943 * 359.97438 * 13 11 9 15 15 C 1.46377 * 119.99627 * 180.02562 * 13 11 9 16 16 H 1.08003 * 120.00016 * 359.97438 * 15 13 11 17 17 C 1.40041 * 119.99760 * 179.97438 * 15 13 11 18 18 N 1.30670 * 120.00203 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99891 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47248 * 90.00293 * 19 17 15 21 21 H 1.48500 * 109.47209 * 209.99938 * 19 17 15 22 22 H 1.48501 * 109.47337 * 330.00090 * 19 17 15 23 23 H 1.08997 * 109.47797 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47440 * 300.00404 * 1 2 3 25 25 H 1.09007 * 109.46753 * 60.00139 * 1 2 3 26 26 H 1.08998 * 109.47113 * 239.99754 * 2 1 3 27 27 H 1.09001 * 109.47121 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47603 * 299.99647 * 3 2 1 29 29 H 1.08998 * 109.47348 * 59.99897 * 3 2 1 30 30 H 1.08994 * 110.37166 * 23.79448 * 6 4 2 31 31 H 1.08990 * 110.37085 * 261.45010 * 6 4 2 32 32 H 1.09005 * 110.37374 * 281.67823 * 8 7 6 33 33 H 1.09000 * 110.37547 * 159.34355 * 8 7 6 34 34 H 1.09002 * 109.47391 * 270.00005 * 12 11 9 35 35 H 1.09001 * 109.46813 * 150.00061 * 12 11 9 36 36 H 1.09004 * 109.47041 * 30.00189 * 12 11 9 37 37 H 0.97006 * 120.00348 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6480 -0.2496 2.1505 6 6 1.6515 -2.2159 1.2079 7 8 2.7843 -2.9074 1.7774 8 6 3.9469 -2.2367 1.2441 9 6 3.5848 -0.7353 1.2737 10 1 3.9873 -0.2280 0.3969 11 7 4.0845 -0.1108 2.5011 12 6 3.6530 -0.6145 3.8073 13 6 4.9411 0.9272 2.4284 14 8 5.2997 1.3453 1.3434 15 6 5.4408 1.5509 3.6548 16 1 5.1228 1.1795 4.6178 17 6 6.3313 2.6291 3.5793 18 7 6.7157 3.0787 2.4142 19 14 6.9685 3.4254 5.1443 20 1 8.2174 2.7455 5.5727 21 1 7.2489 4.8614 4.8903 22 1 5.9460 3.3024 6.2142 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.4887 -2.5372 0.1792 31 1 0.7585 -2.3926 1.8074 32 1 4.1362 -2.5613 0.2209 33 1 4.8173 -2.4295 1.8713 34 1 2.7531 -0.0857 4.1215 35 1 4.4444 -0.4515 4.5390 36 1 3.4406 -1.6811 3.7334 37 1 7.3322 3.8258 2.3619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688221170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:12 Heat of formation + Delta-G solvation = -91.442295 kcal Electronic energy + Delta-G solvation = -18627.821637 eV Core-core repulsion = 15790.916481 eV Total energy + Delta-G solvation = -2836.905156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80405 -37.03012 -35.40280 -33.61282 -32.44685 -29.63717 -28.50876 -26.74376 -26.08221 -25.34350 -22.58569 -21.67379 -19.53927 -18.84985 -16.57711 -16.11777 -15.78373 -15.21161 -15.16554 -14.33601 -14.02253 -13.86413 -13.23163 -12.92371 -12.75127 -12.27781 -12.10696 -11.92231 -11.67359 -11.49411 -11.26719 -11.12678 -11.03337 -10.94427 -10.57882 -10.44979 -10.29395 -10.21334 -10.13913 -10.06256 -9.52826 -8.85831 -7.58200 -7.17638 -6.20485 -4.65329 3.12789 3.20139 3.23124 4.07086 4.28789 4.50589 4.52583 4.93893 5.03699 5.17165 5.35372 5.47735 5.58983 5.59784 5.73124 5.78860 5.91502 5.93139 5.98193 6.10663 6.15987 6.19043 6.19967 6.27609 6.39503 6.43951 6.59387 6.64231 6.71331 6.93634 7.11973 7.44086 7.63242 8.14636 8.36639 9.01627 9.42072 10.56176 10.75028 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030515 B = 0.007389 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.365659 B = 3788.304527 C = 4200.557216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.151 4.151 4 C -0.129 4.129 5 H 0.086 0.914 6 C 0.051 3.949 7 O -0.379 6.379 8 C 0.032 3.968 9 C 0.124 3.876 10 H 0.109 0.891 11 N -0.635 5.635 12 C 0.099 3.901 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.542 4.542 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 -6.725 -1.493 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.149 4.149 5 H 0.105 0.895 6 C -0.026 4.026 7 O -0.298 6.298 8 C -0.046 4.046 9 C 0.017 3.983 10 H 0.127 0.873 11 N -0.372 5.372 12 C -0.046 4.046 13 C 0.364 3.636 14 O -0.460 6.460 15 C -0.579 4.579 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.928 -6.524 -2.035 11.243 hybrid contribution 0.221 0.555 0.767 0.972 sum -8.707 -5.968 -1.268 10.632 Atomic orbital electron populations 1.21865 0.95652 1.01137 1.01627 1.21068 0.95060 0.97095 0.96869 1.21899 1.03534 0.94614 1.00729 1.23001 0.97066 0.95413 0.99381 0.89528 1.23436 0.90121 0.91043 0.97991 1.89069 1.15249 1.56008 1.69454 1.23926 0.89486 0.92614 0.98546 1.22026 0.91530 0.92348 0.92348 0.87317 1.47921 1.50039 1.36105 1.03168 1.21399 0.99064 0.97495 0.86598 1.18252 0.77102 0.77624 0.90621 1.90571 1.60853 1.64185 1.30420 1.21014 1.28352 1.16277 0.92253 0.91009 1.25723 0.94865 0.95998 0.96605 1.70017 1.24750 1.20352 1.24409 0.86413 0.79626 0.78523 0.82464 1.19737 1.20481 1.18908 0.93043 0.92757 0.92908 0.91522 0.90302 0.93587 0.93027 0.92706 0.89811 0.92482 0.88863 0.95458 0.91236 0.92900 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.03 37.16 0.34 -1.37 16 2 C -0.08 -1.19 2.25 -90.62 -0.20 -1.39 16 3 C -0.15 -2.58 8.94 37.15 0.33 -2.25 16 4 C -0.13 -2.04 2.15 -89.04 -0.19 -2.23 16 5 H 0.09 1.48 7.16 -51.93 -0.37 1.11 16 6 C 0.05 0.71 6.27 37.94 0.24 0.95 16 7 O -0.38 -6.24 10.61 -35.23 -0.37 -6.61 16 8 C 0.03 0.55 6.61 37.93 0.25 0.80 16 9 C 0.12 2.38 2.63 -66.36 -0.17 2.20 16 10 H 0.11 2.35 5.28 -51.93 -0.27 2.07 16 11 N -0.64 -14.22 2.77 -173.80 -0.48 -14.70 16 12 C 0.10 1.91 9.15 59.85 0.55 2.45 16 13 C 0.56 15.46 7.61 -12.98 -0.10 15.36 16 14 O -0.58 -17.88 13.69 5.20 0.07 -17.80 16 15 C -0.54 -15.06 8.74 -35.63 -0.31 -15.37 16 16 H 0.07 1.84 6.00 -52.48 -0.31 1.53 16 17 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 18 N -0.77 -22.60 11.83 55.55 0.66 -21.94 16 19 Si 0.91 20.00 29.56 -169.99 -5.02 14.98 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 23 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.08 1.66 5.82 -51.93 -0.30 1.36 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.68 7.83 -51.93 -0.41 0.28 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.67 8.06 -51.93 -0.42 1.25 16 34 H 0.03 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.07 1.38 6.09 -51.93 -0.32 1.06 16 36 H 0.05 0.93 6.41 -51.93 -0.33 0.60 16 37 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -31.86 291.86 -5.75 -37.60 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.62 Total: 2.60 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 0.63 Total: 1.48 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.18 Total: -36.64 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.30 Total: -24.42 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.86 -5.75 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688221170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.837 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds