Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48504 * 109.46954 * 270.00203 * 3 2 1 5 5 H 1.48500 * 109.46963 * 29.99832 * 3 2 1 6 6 H 1.48495 * 109.47218 * 149.99601 * 3 2 1 7 7 C 1.37883 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00195 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99735 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 65.00374 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.53002 * 119.80920 * 111.02124 * 15 14 13 17 17 C 1.54501 * 122.36837 * 183.40191 * 15 14 13 18 18 H 1.09002 * 122.36590 * 0.54952 * 17 15 14 19 19 C 1.54478 * 104.06482 * 136.78371 * 17 15 14 20 20 O 1.44429 * 104.80316 * 23.97624 * 19 17 15 21 21 C 1.44419 * 105.27587 * 319.49248 * 20 19 17 22 22 H 0.96994 * 120.00605 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47243 * 60.00652 * 9 7 2 24 24 H 1.08996 * 109.46912 * 299.99996 * 9 7 2 25 25 H 1.09003 * 109.46726 * 60.00388 * 11 10 9 26 26 H 1.09002 * 109.47214 * 300.00341 * 11 10 9 27 27 H 1.08992 * 109.47056 * 305.00044 * 12 11 10 28 28 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 29 29 H 1.00899 * 110.99484 * 303.95475 * 13 12 11 30 30 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 31 31 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 32 32 H 1.08990 * 117.43580 * 219.99097 * 16 15 14 33 33 H 1.09006 * 117.43021 * 4.63826 * 16 15 14 34 34 H 1.09002 * 110.37303 * 265.15284 * 19 17 15 35 35 H 1.08994 * 110.37797 * 142.81190 * 19 17 15 36 36 H 1.08996 * 110.37150 * 281.67886 * 21 20 19 37 37 H 1.08994 * 110.37387 * 159.33985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0015 13 7 5.3677 -4.7568 -1.2536 14 6 5.7309 -6.1797 -1.2888 15 6 5.2575 -6.7944 -2.6076 16 6 6.2838 -7.2317 -3.6546 17 6 5.4179 -8.2982 -2.9239 18 1 5.8684 -8.9978 -2.2198 19 6 4.0657 -8.6949 -3.5569 20 8 3.5290 -7.4619 -4.0837 21 6 3.8274 -6.4604 -3.0869 22 1 -0.4851 0.8399 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 5.8152 -2.1706 0.8910 26 1 5.8152 -2.1704 -0.8890 27 1 5.3313 -4.6350 0.8434 28 1 6.8899 -4.2194 0.0910 29 1 4.3759 -4.6329 -1.3912 30 1 6.8132 -6.2806 -1.2085 31 1 5.2549 -6.6970 -0.4558 32 1 6.0511 -7.0311 -4.7003 33 1 7.3377 -7.1580 -3.3862 34 1 3.3983 -9.1062 -2.7996 35 1 4.2196 -9.4155 -4.3600 36 1 3.1235 -6.5291 -2.2575 37 1 3.7982 -5.4646 -3.5289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689254497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -58.996717 kcal Electronic energy + Delta-G solvation = -17152.897497 eV Core-core repulsion = 14317.399288 eV Total energy + Delta-G solvation = -2835.498210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45014 -37.40356 -35.78820 -34.19027 -32.61457 -30.04452 -28.42718 -27.34166 -25.83803 -24.68045 -21.93432 -21.53065 -20.80420 -19.42459 -16.93090 -16.63218 -16.03918 -15.94438 -15.50154 -15.18437 -14.82134 -14.48331 -14.05728 -13.67126 -13.39617 -13.02136 -12.60363 -12.58029 -12.20192 -12.05856 -11.62404 -11.57612 -11.15090 -10.98419 -10.74151 -10.60649 -10.20591 -10.08862 -9.87538 -9.60114 -9.20401 -8.87114 -8.48871 -8.29520 -6.12716 -4.12020 3.24788 3.24799 3.31675 3.32923 3.76800 4.15632 4.34859 4.47521 4.59425 4.65046 4.67430 4.78352 5.11749 5.18998 5.29268 5.31702 5.44053 5.45471 5.52151 5.60808 5.62818 5.70548 5.80859 5.85181 5.90112 5.98030 6.04482 6.17614 6.60045 6.62640 6.98683 7.10208 7.51999 7.59016 7.98847 8.64351 8.97548 9.46517 11.00284 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.004475 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.222526 B = 6255.798383 C = 6851.571287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.385 6.385 11 C 0.057 3.943 12 C 0.066 3.934 13 N -0.685 5.685 14 C 0.107 3.893 15 C -0.157 4.157 16 C -0.122 4.122 17 C -0.206 4.206 18 H 0.121 0.879 19 C 0.071 3.929 20 O -0.373 6.373 21 C 0.076 3.924 22 H 0.267 0.733 23 H 0.002 0.998 24 H 0.000 1.000 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.356 0.644 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.725 -14.675 -4.022 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.020 4.020 12 C -0.064 4.064 13 N -0.318 5.318 14 C -0.023 4.023 15 C -0.158 4.158 16 C -0.159 4.159 17 C -0.225 4.225 18 H 0.139 0.861 19 C -0.006 4.006 20 O -0.291 6.291 21 C -0.001 4.001 22 H 0.077 0.923 23 H 0.020 0.980 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.176 0.824 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.845 -14.463 -4.553 20.533 hybrid contribution 0.065 0.753 0.962 1.223 sum 13.910 -13.711 -3.592 19.859 Atomic orbital electron populations 1.69869 1.06077 1.27131 1.50288 1.24763 0.94791 0.98774 0.94580 0.86846 0.80308 0.83736 0.78829 1.19857 1.20800 1.19133 1.20882 0.88277 0.95285 1.51344 0.90040 1.20579 0.96091 0.79360 0.94382 1.87839 1.17670 1.29826 1.95103 1.22383 0.84881 0.95103 0.99680 1.21943 0.99597 0.94272 0.90540 1.60434 1.23797 1.12174 1.35422 1.21198 1.00061 0.88400 0.92624 1.23157 0.97230 0.96658 0.98753 1.23293 0.95817 0.98929 0.97856 1.24578 0.99864 0.92609 1.05477 0.86071 1.22893 0.91120 0.88115 0.98452 1.89173 1.79503 1.18135 1.42306 1.22891 0.91845 0.93426 0.91925 0.92342 0.98031 0.98244 0.93922 0.93303 0.94566 0.90512 0.82359 0.90860 0.94936 0.88450 0.87860 0.91533 0.88991 0.91293 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.41 9.99 -34.44 -0.34 -15.75 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.17 4.33 4.76 36.00 0.17 4.50 16 10 O -0.39 -8.75 9.85 -35.23 -0.35 -9.10 16 11 C 0.06 0.99 6.28 37.16 0.23 1.23 16 12 C 0.07 0.93 6.11 -3.82 -0.02 0.90 16 13 N -0.69 -9.73 6.44 -113.78 -0.73 -10.46 16 14 C 0.11 1.23 6.09 -3.82 -0.02 1.21 16 15 C -0.16 -1.78 2.75 -152.94 -0.42 -2.20 16 16 C -0.12 -1.22 9.79 -25.35 -0.25 -1.47 16 17 C -0.21 -1.96 7.28 -87.67 -0.64 -2.60 16 18 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 19 C 0.07 0.71 7.54 37.93 0.29 1.00 16 20 O -0.37 -5.00 11.32 -35.23 -0.40 -5.40 16 21 C 0.08 0.98 6.14 37.94 0.23 1.21 16 22 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 24 H 0.00 0.00 7.57 -51.93 -0.39 -0.40 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.36 5.69 7.29 -39.29 -0.29 5.41 16 30 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 306.08 15.07 4.61 4.61 Total: -1.00 -31.62 306.08 -7.76 -39.39 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.13 Total: 0.98 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.87 Total: -9.92 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.04 Total: -37.31 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.75 Total: -14.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.62 -7.76 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689254497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.611 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds