Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48504 * 109.46954 * 270.00203 * 3 2 1 5 5 H 1.48500 * 109.46963 * 29.99832 * 3 2 1 6 6 H 1.48495 * 109.47218 * 149.99601 * 3 2 1 7 7 C 1.37883 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00195 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99735 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 65.00374 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.53002 * 119.80920 * 111.02124 * 15 14 13 17 17 C 1.54501 * 122.36837 * 183.40191 * 15 14 13 18 18 H 1.09002 * 122.36590 * 0.54952 * 17 15 14 19 19 C 1.54478 * 104.06482 * 136.78371 * 17 15 14 20 20 O 1.44429 * 104.80316 * 23.97624 * 19 17 15 21 21 C 1.44419 * 105.27587 * 319.49248 * 20 19 17 22 22 H 0.96994 * 120.00605 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47243 * 60.00652 * 9 7 2 24 24 H 1.08996 * 109.46912 * 299.99996 * 9 7 2 25 25 H 1.09003 * 109.46726 * 60.00388 * 11 10 9 26 26 H 1.09002 * 109.47214 * 300.00341 * 11 10 9 27 27 H 1.08992 * 109.47056 * 305.00044 * 12 11 10 28 28 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 29 29 H 1.00899 * 110.99484 * 303.95475 * 13 12 11 30 30 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 31 31 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 32 32 H 1.08990 * 117.43580 * 219.99097 * 16 15 14 33 33 H 1.09006 * 117.43021 * 4.63826 * 16 15 14 34 34 H 1.09002 * 110.37303 * 265.15284 * 19 17 15 35 35 H 1.08994 * 110.37797 * 142.81190 * 19 17 15 36 36 H 1.08996 * 110.37150 * 281.67886 * 21 20 19 37 37 H 1.08994 * 110.37387 * 159.33985 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0015 13 7 5.3677 -4.7568 -1.2536 14 6 5.7309 -6.1797 -1.2888 15 6 5.2575 -6.7944 -2.6076 16 6 6.2838 -7.2317 -3.6546 17 6 5.4179 -8.2982 -2.9239 18 1 5.8684 -8.9978 -2.2198 19 6 4.0657 -8.6949 -3.5569 20 8 3.5290 -7.4619 -4.0837 21 6 3.8274 -6.4604 -3.0869 22 1 -0.4851 0.8399 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 5.8152 -2.1706 0.8910 26 1 5.8152 -2.1704 -0.8890 27 1 5.3313 -4.6350 0.8434 28 1 6.8899 -4.2194 0.0910 29 1 4.3759 -4.6329 -1.3912 30 1 6.8132 -6.2806 -1.2085 31 1 5.2549 -6.6970 -0.4558 32 1 6.0511 -7.0311 -4.7003 33 1 7.3377 -7.1580 -3.3862 34 1 3.3983 -9.1062 -2.7996 35 1 4.2196 -9.4155 -4.3600 36 1 3.1235 -6.5291 -2.2575 37 1 3.7982 -5.4646 -3.5289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689254497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = -82.517554 kcal Electronic energy + Delta-G solvation = -17153.917437 eV Core-core repulsion = 14317.399288 eV Total energy + Delta-G solvation = -2836.518150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33522 -38.94423 -36.98414 -35.27490 -34.73660 -31.35586 -29.89196 -28.79210 -26.73798 -25.74017 -24.00464 -22.77212 -21.60836 -20.32288 -19.06081 -17.72826 -17.38444 -17.07184 -16.79574 -16.40712 -16.29285 -15.94933 -15.26688 -15.00320 -14.62565 -14.44346 -14.03443 -13.56460 -13.40167 -13.37705 -13.20563 -12.73146 -12.54694 -12.38890 -12.16991 -11.93420 -11.83219 -11.37093 -11.04612 -11.02690 -10.93071 -10.47627 -10.34393 -9.36056 -8.37922 -6.45916 1.33462 1.36309 1.47004 2.29068 2.42625 2.88735 2.95057 3.09085 3.20640 3.61578 3.71782 3.82555 3.89179 4.18479 4.30434 4.36078 4.41979 4.50396 4.56402 4.61288 4.64956 4.76089 4.76794 4.80869 4.84427 4.89363 4.92028 5.00717 5.02222 5.20582 5.43263 5.71803 5.92227 6.07915 6.31408 6.58045 6.73600 7.18776 8.79187 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.004475 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.222526 B = 6255.798383 C = 6851.571287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.182 3.818 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.071 3.929 13 N -0.695 5.695 14 C 0.112 3.888 15 C -0.175 4.175 16 C -0.119 4.119 17 C -0.186 4.186 18 H 0.146 0.854 19 C 0.061 3.939 20 O -0.397 6.397 21 C 0.074 3.926 22 H 0.273 0.727 23 H 0.012 0.988 24 H 0.010 0.990 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.341 0.659 30 H 0.093 0.907 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.640 -14.556 -3.781 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.583 4.583 8 H 0.049 0.951 9 C 0.106 3.894 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.058 4.058 13 N -0.327 5.327 14 C -0.017 4.017 15 C -0.176 4.176 16 C -0.155 4.155 17 C -0.204 4.204 18 H 0.164 0.836 19 C -0.015 4.015 20 O -0.316 6.316 21 C -0.003 4.003 22 H 0.082 0.918 23 H 0.030 0.970 24 H 0.027 0.973 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.789 -14.379 -4.310 22.521 hybrid contribution -0.896 0.573 0.855 1.365 sum 15.893 -13.806 -3.455 21.334 Atomic orbital electron populations 1.70027 1.08282 1.28792 1.51098 1.25833 0.95770 1.03410 0.93431 0.85611 0.79460 0.77531 0.79753 1.18508 1.19839 1.16818 1.21169 0.91000 0.93825 1.52348 0.95142 1.20282 0.93176 0.80958 0.94998 1.87806 1.21368 1.28326 1.95276 1.22731 0.81751 0.97705 1.00616 1.21974 1.01384 0.92047 0.90355 1.60500 1.22630 1.14118 1.35445 1.21233 1.01084 0.86721 0.92664 1.23083 0.96555 0.98584 0.99353 1.23386 0.96536 0.98655 0.96961 1.24689 0.99206 0.91679 1.04876 0.83631 1.23170 0.91662 0.87203 0.99485 1.89139 1.80136 1.19461 1.42899 1.22782 0.93344 0.92744 0.91401 0.91801 0.96997 0.97279 0.92229 0.92923 0.95047 0.87124 0.84158 0.88872 0.94919 0.89515 0.85851 0.90733 0.87182 0.92290 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.81 5.47 84.66 0.46 1.27 16 3 Si 0.96 43.54 27.47 68.60 1.88 45.42 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.58 16 7 C -0.55 -33.35 9.99 25.60 0.26 -33.10 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 9 C 0.18 9.12 4.76 71.23 0.34 9.45 16 10 O -0.41 -18.62 9.85 -148.98 -1.47 -20.09 16 11 C 0.05 1.61 6.28 71.98 0.45 2.06 16 12 C 0.07 1.88 6.11 86.30 0.53 2.41 16 13 N -0.70 -19.16 6.44 -513.88 -3.31 -22.47 16 14 C 0.11 2.39 6.09 86.31 0.53 2.91 16 15 C -0.18 -3.77 2.75 -51.16 -0.14 -3.91 16 16 C -0.12 -2.13 9.79 31.49 0.31 -1.83 16 17 C -0.19 -3.10 7.28 -8.89 -0.06 -3.17 16 18 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 19 C 0.06 1.15 7.54 72.48 0.55 1.70 16 20 O -0.40 -10.82 11.32 -148.98 -1.69 -12.51 16 21 C 0.07 1.99 6.14 72.49 0.44 2.44 16 22 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 23 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 24 H 0.01 0.45 7.57 -2.39 -0.02 0.44 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.34 11.19 7.29 -89.69 -0.65 10.54 16 30 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 31 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.75 8.07 -2.39 -0.02 1.73 16 33 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -70.36 306.08 -0.29 -70.65 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.33 Total: 18.11 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 3.66 Total: -19.77 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.01 Total: -81.83 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -3.15 Total: -32.59 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -70.36 -0.29 -70.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689254497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.864 kcal (2) G-P(sol) polarization free energy of solvation -70.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds