Wall clock time and date at job start Mon Mar 30 2020 03:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99377 * 3 2 1 5 5 H 1.48499 * 109.47131 * 29.99631 * 3 2 1 6 6 H 1.48496 * 109.46943 * 149.99511 * 3 2 1 7 7 C 1.37875 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00028 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00353 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99786 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47074 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.46812 * 65.00373 * 12 11 10 14 14 C 1.46905 * 111.00250 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47665 * 180.02562 * 14 13 12 16 16 C 1.53102 * 120.34907 * 247.69553 * 15 14 13 17 17 C 1.53005 * 60.75417 * 247.78599 * 16 15 14 18 18 H 1.09003 * 119.81036 * 113.30554 * 17 16 15 19 19 C 1.54482 * 118.06637 * 269.56729 * 17 16 15 20 20 O 1.44428 * 104.80095 * 38.87090 * 19 17 16 21 21 C 1.44418 * 105.27730 * 40.51197 * 20 19 17 22 22 H 0.96996 * 120.00119 * 0.02562 * 1 2 3 23 23 H 1.09010 * 109.46814 * 59.99979 * 9 7 2 24 24 H 1.08994 * 109.46903 * 300.00509 * 9 7 2 25 25 H 1.09008 * 109.46946 * 60.00235 * 11 10 9 26 26 H 1.09000 * 109.47632 * 300.00519 * 11 10 9 27 27 H 1.08994 * 109.47324 * 305.00182 * 12 11 10 28 28 H 1.09000 * 109.47231 * 185.00093 * 12 11 10 29 29 H 1.00898 * 111.00526 * 303.95444 * 13 12 11 30 30 H 1.08999 * 109.46815 * 59.99715 * 14 13 12 31 31 H 1.09005 * 109.46777 * 300.00150 * 14 13 12 32 32 H 1.08999 * 117.42315 * 140.06713 * 16 15 14 33 33 H 1.09000 * 117.33523 * 355.53471 * 16 15 14 34 34 H 1.09007 * 110.37182 * 280.04166 * 19 17 16 35 35 H 1.08992 * 110.37634 * 157.70217 * 19 17 16 36 36 H 1.09002 * 110.37229 * 78.32007 * 21 20 19 37 37 H 1.08999 * 110.37270 * 200.54594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0022 11 6 5.4124 -2.6541 0.0022 12 6 5.8070 -4.1323 0.0041 13 7 5.3677 -4.7578 -1.2503 14 6 5.7309 -6.1809 -1.2844 15 6 5.2586 -6.7964 -2.6031 16 6 4.1357 -7.8370 -2.6127 17 6 5.5556 -8.2660 -2.9881 18 1 6.1026 -8.9531 -2.3426 19 6 5.9690 -8.1891 -4.4746 20 8 5.3595 -6.9749 -4.9648 21 6 5.5291 -6.0091 -3.9045 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 5.8152 -2.1698 0.8919 26 1 5.8153 -2.1712 -0.8881 27 1 5.3312 -4.6343 0.8465 28 1 6.8898 -4.2193 0.0937 29 1 4.3759 -4.6341 -1.3882 30 1 5.2549 -6.6974 -0.4509 31 1 6.8133 -6.2816 -1.2039 32 1 3.4009 -7.7753 -3.4155 33 1 3.7503 -8.1664 -1.6478 34 1 5.5870 -9.0523 -5.0198 35 1 7.0537 -8.1322 -4.5644 36 1 6.5465 -5.6178 -3.9068 37 1 4.8106 -5.1967 -4.0128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689254503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:27 Heat of formation + Delta-G solvation = -83.275929 kcal Electronic energy + Delta-G solvation = -17102.165832 eV Core-core repulsion = 14265.614796 eV Total energy + Delta-G solvation = -2836.551035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35588 -38.93572 -36.96707 -35.30534 -34.74061 -31.34929 -29.88334 -28.77929 -26.70850 -25.67564 -24.00206 -22.76968 -21.54260 -20.35602 -19.05768 -17.73414 -17.35281 -17.05497 -16.70949 -16.45088 -16.33937 -15.67362 -15.27920 -15.16041 -14.73025 -14.26317 -13.98812 -13.58151 -13.52152 -13.26384 -13.01976 -12.83231 -12.49872 -12.37555 -12.31391 -11.93225 -11.81892 -11.35502 -11.09021 -10.95514 -10.92389 -10.38902 -10.34150 -9.38788 -8.37750 -6.45719 1.33598 1.36480 1.47164 2.29242 2.43700 2.94001 2.95211 3.09483 3.19540 3.64762 3.78837 3.85647 3.91183 4.18417 4.29746 4.39226 4.50545 4.51767 4.56545 4.63035 4.67601 4.76823 4.80555 4.84530 4.89635 4.92438 4.94162 4.98800 5.02850 5.17512 5.43623 5.78948 5.92715 6.09693 6.33580 6.58320 6.74343 7.19004 8.79383 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.004226 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.205058 B = 6623.651672 C = 6911.369940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.182 3.818 10 O -0.407 6.407 11 C 0.049 3.951 12 C 0.072 3.928 13 N -0.693 5.693 14 C 0.114 3.886 15 C -0.178 4.178 16 C -0.143 4.143 17 C -0.176 4.176 18 H 0.146 0.854 19 C 0.065 3.935 20 O -0.402 6.402 21 C 0.091 3.909 22 H 0.273 0.727 23 H 0.012 0.988 24 H 0.010 0.990 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.110 0.890 29 H 0.342 0.658 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.249 -14.304 -4.099 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.583 4.583 8 H 0.048 0.952 9 C 0.106 3.894 10 O -0.327 6.327 11 C -0.028 4.028 12 C -0.057 4.057 13 N -0.325 5.325 14 C -0.015 4.015 15 C -0.178 4.178 16 C -0.180 4.180 17 C -0.195 4.195 18 H 0.163 0.837 19 C -0.011 4.011 20 O -0.322 6.322 21 C 0.015 3.985 22 H 0.082 0.918 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.448 -14.115 -4.651 22.919 hybrid contribution -0.829 0.530 0.850 1.300 sum 16.619 -13.585 -3.801 21.798 Atomic orbital electron populations 1.70033 1.08280 1.28783 1.51117 1.25836 0.95780 1.03420 0.93437 0.85605 0.79450 0.77512 0.79757 1.18495 1.19845 1.16825 1.21174 0.91032 0.93818 1.52324 0.95166 1.20277 0.93153 0.80987 0.94975 1.87809 1.21378 1.28274 1.95266 1.22724 0.81736 0.97719 1.00575 1.21951 1.01279 0.91998 0.90422 1.60490 1.22763 1.13859 1.35345 1.21182 1.00847 0.86984 0.92526 1.23199 1.06022 0.91803 0.96825 1.23037 0.91591 1.00209 1.03160 1.24263 0.99709 0.97402 0.98126 0.83677 1.23142 0.98443 0.87796 0.91758 1.89135 1.80034 1.23113 1.39894 1.22641 1.01553 0.91154 0.83170 0.91806 0.97055 0.97259 0.92348 0.92891 0.95115 0.87225 0.84025 0.94688 0.89235 0.89755 0.87153 0.87661 0.89837 0.90654 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.79 5.47 84.65 0.46 1.25 16 3 Si 0.96 43.52 27.47 68.60 1.88 45.41 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.55 -33.37 9.99 25.60 0.26 -33.11 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 9 C 0.18 9.12 4.76 71.24 0.34 9.46 16 10 O -0.41 -18.56 9.85 -148.98 -1.47 -20.02 16 11 C 0.05 1.62 6.28 71.98 0.45 2.07 16 12 C 0.07 1.89 6.11 86.31 0.53 2.41 16 13 N -0.69 -18.72 6.09 -513.91 -3.13 -21.85 16 14 C 0.11 2.40 6.07 86.30 0.52 2.92 16 15 C -0.18 -3.81 2.77 -51.03 -0.14 -3.95 16 16 C -0.14 -2.96 9.68 30.63 0.30 -2.67 16 17 C -0.18 -2.93 7.18 -9.68 -0.07 -3.00 16 18 H 0.15 1.72 8.14 -2.39 -0.02 1.71 16 19 C 0.06 1.11 7.53 72.49 0.55 1.66 16 20 O -0.40 -10.16 11.31 -148.98 -1.69 -11.85 16 21 C 0.09 2.22 6.85 72.49 0.50 2.72 16 22 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 23 H 0.01 0.56 7.20 -2.38 -0.02 0.54 16 24 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 25 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.34 11.23 8.29 -89.70 -0.74 10.49 16 30 H 0.03 0.73 8.06 -2.39 -0.02 0.72 16 31 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.08 1.97 8.06 -2.39 -0.02 1.95 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.81 307.22 -0.17 -69.98 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.24 Total: 17.94 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.69 Total: -20.26 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -2.83 Total: -81.20 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -3.15 Total: -31.87 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.41 kcal Total: -69.81 -0.17 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689254503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.292 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds