Wall clock time and date at job start Mon Mar 30 2020 03:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 110.64237 * 61.41947 * 9 7 2 11 11 C 1.54595 * 110.72061 * 298.26805 * 9 7 2 12 12 C 1.53995 * 105.13584 * 219.68547 * 11 9 7 13 13 N 1.47903 * 107.06163 * 358.77497 * 12 11 9 14 14 C 1.46894 * 111.00350 * 145.84289 * 13 12 11 15 15 C 1.53003 * 109.47187 * 69.87476 * 14 13 12 16 16 H 1.09007 * 109.52079 * 60.12871 * 15 14 13 17 17 C 1.53136 * 109.52555 * 180.32817 * 15 14 13 18 18 O 1.43080 * 109.15066 * 175.21660 * 17 15 14 19 19 C 1.43073 * 113.58973 * 302.04655 * 18 17 15 20 20 C 1.53149 * 109.15433 * 57.95385 * 19 18 17 21 21 O 1.43073 * 109.14766 * 304.68733 * 20 19 18 22 22 C 1.48533 * 105.81833 * 25.32768 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.31175 * 338.59734 * 11 9 7 25 25 H 1.08992 * 110.31168 * 100.77044 * 11 9 7 26 26 H 1.09000 * 109.91902 * 118.12979 * 12 11 9 27 27 H 1.08998 * 109.91841 * 239.42199 * 12 11 9 28 28 H 1.08997 * 109.47579 * 189.87550 * 14 13 12 29 29 H 1.09000 * 109.47023 * 309.87633 * 14 13 12 30 30 H 1.08999 * 109.52561 * 295.11392 * 17 15 14 31 31 H 1.08995 * 109.52893 * 55.31206 * 17 15 14 32 32 H 1.08997 * 109.52720 * 298.05160 * 19 18 17 33 33 H 1.09003 * 109.57988 * 177.88673 * 19 18 17 34 34 H 1.08995 * 109.52479 * 184.78328 * 20 19 18 35 35 H 1.08999 * 109.57699 * 64.61665 * 20 19 18 36 36 H 1.08995 * 110.66945 * 202.35549 * 22 13 12 37 37 H 1.09003 * 110.66302 * 79.22763 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6400 -2.5861 -0.9039 11 6 0.3789 -2.6330 1.2642 12 6 0.5067 -4.1086 1.6860 13 7 1.3765 -4.7709 0.6900 14 6 2.1984 -5.8133 1.3191 15 6 1.3060 -6.9845 1.7351 16 1 0.8118 -7.3964 0.8552 17 6 2.1604 -8.0685 2.3985 18 8 1.3057 -9.1081 2.8840 19 6 0.3206 -8.6512 3.8157 20 6 -0.5338 -7.5671 3.1523 21 8 0.3209 -6.5276 2.6668 22 6 2.2268 -3.6964 0.1168 23 1 -0.4850 0.8401 -0.0004 24 1 0.7550 -1.9804 2.0520 25 1 -0.6597 -2.3932 1.0368 26 1 0.9588 -4.1740 2.6757 27 1 -0.4763 -4.5795 1.6921 28 1 2.9484 -6.1624 0.6094 29 1 2.6938 -5.4035 2.1992 30 1 2.8570 -8.4808 1.6686 31 1 2.7165 -7.6359 3.2302 32 1 0.8148 -8.2382 4.6950 33 1 -0.3153 -9.4850 4.1132 34 1 -1.2304 -7.1549 3.8822 35 1 -1.0907 -7.9990 2.3207 36 1 2.6045 -3.9864 -0.8637 37 1 3.0487 -3.4554 0.7909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690651238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:15 Heat of formation + Delta-G solvation = -87.857505 kcal Electronic energy + Delta-G solvation = -18042.099537 eV Core-core repulsion = 15205.349829 eV Total energy + Delta-G solvation = -2836.749708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98937 -37.84649 -35.93781 -33.56115 -32.11279 -29.93208 -28.29193 -27.89444 -25.53398 -23.98255 -22.76061 -21.00423 -19.94494 -19.34284 -16.87159 -16.69497 -16.29177 -15.99323 -15.37018 -15.03522 -14.65929 -14.49204 -14.00058 -13.37628 -13.00168 -12.75884 -12.29138 -12.16045 -11.89364 -11.56128 -11.17773 -11.00969 -10.86618 -10.74449 -10.69101 -10.38938 -10.36117 -9.98887 -9.54298 -9.20964 -9.05761 -8.69675 -8.35265 -7.67718 -5.98182 -4.01560 3.32110 3.38786 3.41615 3.60440 3.72700 4.36071 4.47844 4.75440 4.89862 4.98402 5.07501 5.19666 5.25394 5.35887 5.40404 5.50857 5.61234 5.69002 5.86474 5.96354 6.12461 6.27637 6.39099 6.51586 6.72647 6.84337 6.91800 7.15944 7.23957 7.30758 7.68567 7.74282 7.79717 7.93831 8.09091 8.49247 9.00944 9.62301 11.11580 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.057653 B = 0.004933 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.545212 B = 5674.265333 C = 5933.764285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.035 0.965 11 C -0.105 4.105 12 C 0.050 3.950 13 N -0.520 5.520 14 C 0.056 3.944 15 C 0.062 3.938 16 H 0.074 0.926 17 C 0.031 3.969 18 O -0.382 6.382 19 C 0.024 3.976 20 C 0.023 3.977 21 O -0.361 6.361 22 C 0.040 3.960 23 H 0.259 0.741 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 -15.163 6.357 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.053 0.947 11 C -0.143 4.143 12 C -0.078 4.078 13 N -0.244 5.244 14 C -0.073 4.073 15 C 0.003 3.997 16 H 0.092 0.908 17 C -0.047 4.047 18 O -0.301 6.301 19 C -0.053 4.053 20 C -0.055 4.055 21 O -0.280 6.280 22 C -0.087 4.087 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.813 -15.300 5.963 16.441 hybrid contribution 0.881 1.276 0.761 1.727 sum 1.694 -14.024 6.724 15.645 Atomic orbital electron populations 1.69989 1.05871 1.26410 1.50254 1.24966 0.94823 0.98967 0.95095 0.86634 0.79849 0.83655 0.78075 1.20684 1.21292 1.20000 1.21107 0.92743 0.90476 1.51170 0.92697 1.19516 0.92060 0.90758 0.94292 0.94677 1.22362 1.01168 0.91246 0.99565 1.22883 0.96758 0.95781 0.92331 1.64723 1.18578 1.11223 1.29871 1.22162 0.94399 0.92895 0.97871 1.22806 0.90131 0.94822 0.91899 0.90799 1.23262 0.92754 0.89459 0.99184 1.88060 1.46768 1.33375 1.61875 1.23249 0.91417 0.98620 0.92024 1.23188 0.93193 0.89912 0.99170 1.88292 1.46255 1.31973 1.61514 1.23379 0.95851 0.91961 0.97545 0.93082 0.93021 0.92342 0.95180 0.91672 0.89900 0.94406 0.87810 0.92282 0.92358 0.88137 0.88075 0.92319 0.91975 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 12.45 55.43 0.69 -25.15 16 2 C 0.06 1.78 5.34 -17.82 -0.10 1.68 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.34 8.42 -34.44 -0.29 -14.63 16 8 H 0.05 1.50 7.78 -52.49 -0.41 1.09 16 9 C 0.05 1.36 2.98 -89.91 -0.27 1.09 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.10 -2.56 5.51 -25.37 -0.14 -2.70 16 12 C 0.05 1.04 5.04 -2.75 -0.01 1.02 16 13 N -0.52 -10.20 5.27 -230.46 -1.21 -11.41 16 14 C 0.06 0.87 4.65 -3.83 -0.02 0.86 16 15 C 0.06 0.86 3.10 -26.66 -0.08 0.78 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 17 C 0.03 0.36 6.34 37.23 0.24 0.59 16 18 O -0.38 -4.73 10.85 -48.80 -0.53 -5.26 16 19 C 0.02 0.24 7.05 37.23 0.26 0.51 16 20 C 0.02 0.26 7.05 37.23 0.26 0.52 16 21 O -0.36 -5.43 7.53 -48.80 -0.37 -5.80 16 22 C 0.04 0.85 5.95 -1.90 -0.01 0.84 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 1.34 7.84 -51.93 -0.41 0.93 16 25 H 0.06 1.51 8.05 -51.93 -0.42 1.09 16 26 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.06 1.33 7.37 -51.93 -0.38 0.95 16 28 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 29 H 0.04 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -30.21 292.07 -8.37 -38.57 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.17 Total: -2.31 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.16 Total: -9.44 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.52 Total: -36.56 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.90 Total: -11.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.21 -8.37 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690651238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.283 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds