Wall clock time and date at job start Mon Mar 30 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48497 * 109.46743 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47393 * 300.00181 * 3 2 1 6 6 H 1.48502 * 109.46918 * 60.00427 * 3 2 1 7 7 C 1.37880 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99781 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.63138 * 300.70050 * 9 7 2 11 11 C 1.55137 * 110.85562 * 63.91221 * 9 7 2 12 12 C 1.54906 * 101.65340 * 154.10145 * 11 9 7 13 13 N 1.47840 * 104.79740 * 322.92990 * 12 11 9 14 14 C 1.46900 * 110.99992 * 146.36180 * 13 12 11 15 15 C 1.52997 * 109.47398 * 69.15716 * 14 13 12 16 16 H 1.09006 * 109.52336 * 59.86440 * 15 14 13 17 17 C 1.53139 * 109.52930 * 179.97438 * 15 14 13 18 18 O 1.43075 * 109.15340 * 175.21468 * 17 15 14 19 19 C 1.43075 * 113.59156 * 302.04810 * 18 17 15 20 20 C 1.53144 * 109.14942 * 57.95359 * 19 18 17 21 21 O 1.43075 * 109.52252 * 299.67424 * 15 14 13 22 22 C 1.47441 * 108.56515 * 24.09695 * 13 12 11 23 23 H 0.97005 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.99327 * 272.19768 * 11 9 7 25 25 H 1.08999 * 110.99116 * 36.01231 * 11 9 7 26 26 H 1.09005 * 110.37603 * 204.09846 * 12 11 9 27 27 H 1.08999 * 110.46469 * 81.80868 * 12 11 9 28 28 H 1.09000 * 109.47426 * 189.16128 * 14 13 12 29 29 H 1.09007 * 109.47368 * 309.15820 * 14 13 12 30 30 H 1.08997 * 109.52445 * 295.11963 * 17 15 14 31 31 H 1.08999 * 109.52067 * 55.31400 * 17 15 14 32 32 H 1.09002 * 109.52428 * 177.85294 * 19 18 17 33 33 H 1.09005 * 109.52601 * 298.05151 * 19 18 17 34 34 H 1.08998 * 109.52728 * 64.59420 * 20 19 18 35 35 H 1.09013 * 109.52033 * 184.78531 * 20 19 18 36 36 H 1.09008 * 109.88448 * 239.60068 * 22 13 12 37 37 H 1.08994 * 109.89300 * 118.41851 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6082 -2.5715 0.8768 11 6 0.4222 -2.6584 -1.3023 12 6 0.3178 -4.1994 -1.4202 13 7 1.6260 -4.7035 -0.9512 14 6 1.4770 -5.9911 -0.2600 15 6 1.0887 -7.0712 -1.2717 16 1 1.8647 -7.1533 -2.0328 17 6 0.9336 -8.4143 -0.5525 18 8 0.4626 -9.3935 -1.4833 19 6 -0.7802 -9.0455 -2.1008 20 6 -0.6250 -7.7024 -2.8200 21 8 -0.1539 -6.7229 -1.8896 22 6 2.2271 -3.6928 -0.0617 23 1 -0.4850 0.8401 0.0004 24 1 -0.5642 -2.2072 -1.1948 25 1 0.9518 -2.2365 -2.1564 26 1 0.1486 -4.4901 -2.4571 27 1 -0.4840 -4.5767 -0.7855 28 1 2.4207 -6.2602 0.2145 29 1 0.6993 -5.9081 0.4993 30 1 1.8980 -8.7265 -0.1520 31 1 0.2162 -8.3108 0.2616 32 1 -1.0569 -9.8149 -2.8216 33 1 -1.5552 -8.9632 -1.3387 34 1 0.0922 -7.8058 -3.6342 35 1 -1.5896 -7.3901 -3.2206 36 1 3.1861 -3.3674 -0.4650 37 1 2.3644 -4.1110 0.9354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690651240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:17 Heat of formation + Delta-G solvation = -87.842811 kcal Electronic energy + Delta-G solvation = -18052.812130 eV Core-core repulsion = 15216.063060 eV Total energy + Delta-G solvation = -2836.749070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.98440 -37.88405 -35.93062 -33.51798 -32.10258 -29.90251 -28.31293 -27.92612 -25.51205 -23.97980 -22.77057 -20.98889 -19.87643 -19.43857 -16.81061 -16.74399 -16.36883 -16.02412 -15.37890 -15.28917 -14.54620 -14.16180 -13.99230 -13.38948 -13.04901 -12.64487 -12.37442 -12.10633 -11.76867 -11.58363 -11.22203 -11.00851 -10.90812 -10.69178 -10.62760 -10.61181 -10.33556 -9.93904 -9.53547 -9.25836 -9.06510 -8.78752 -8.35054 -7.53127 -5.99039 -4.01570 3.31604 3.39556 3.43745 3.61362 3.73519 4.37966 4.47069 4.75578 4.90958 4.99446 5.08574 5.21114 5.27099 5.34240 5.41279 5.51461 5.61392 5.70749 5.85425 5.98104 6.14344 6.31766 6.35935 6.48628 6.80087 6.85201 6.91330 7.16743 7.23569 7.31651 7.65342 7.72455 7.88307 7.95196 8.05249 8.45652 9.00341 9.62230 11.10951 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.062055 B = 0.004904 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.106403 B = 5707.776614 C = 5973.503384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.034 3.966 10 H 0.027 0.973 11 C -0.107 4.107 12 C 0.054 3.946 13 N -0.531 5.531 14 C 0.060 3.940 15 C 0.062 3.938 16 H 0.074 0.926 17 C 0.030 3.970 18 O -0.382 6.382 19 C 0.024 3.976 20 C 0.023 3.977 21 O -0.361 6.361 22 C 0.046 3.954 23 H 0.259 0.741 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -15.897 -2.990 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.015 3.985 10 H 0.045 0.955 11 C -0.146 4.146 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.069 4.069 15 C 0.003 3.997 16 H 0.091 0.909 17 C -0.047 4.047 18 O -0.301 6.301 19 C -0.053 4.053 20 C -0.055 4.055 21 O -0.280 6.280 22 C -0.080 4.080 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.863 -15.863 -3.404 16.247 hybrid contribution -0.199 1.009 0.680 1.233 sum -1.062 -14.854 -2.724 15.139 Atomic orbital electron populations 1.69982 1.05931 1.26316 1.50667 1.24983 0.94832 0.99067 0.95082 0.86556 0.80191 0.83883 0.77494 1.19750 1.21059 1.21135 1.21127 0.92795 0.90248 1.50619 0.92441 1.19806 0.92688 0.92062 0.93981 0.95470 1.22660 1.01210 0.90967 0.99736 1.23047 0.88525 0.96564 0.99202 1.63593 1.23451 1.01970 1.36539 1.22193 1.00084 0.90790 0.93800 1.22811 0.87067 0.93726 0.96056 0.90855 1.23264 1.00852 0.88946 0.91634 1.88058 1.38657 1.44333 1.59049 1.23253 0.86683 0.97770 0.97616 1.23189 1.00908 0.89047 0.92321 1.88297 1.38341 1.43025 1.58318 1.23004 0.99764 0.92533 0.92741 0.93164 0.91320 0.92760 0.91747 0.94741 0.89991 0.94395 0.87821 0.92249 0.88155 0.92324 0.92368 0.88071 0.91266 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 12.30 55.43 0.68 -25.22 16 2 C 0.06 1.74 5.35 -17.82 -0.10 1.64 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.17 8.49 -34.44 -0.29 -14.46 16 8 H 0.06 1.58 7.55 -52.49 -0.40 1.18 16 9 C 0.03 0.86 2.81 -89.95 -0.25 0.61 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.60 5.85 -24.59 -0.14 -2.75 16 12 C 0.05 1.11 5.02 -2.30 -0.01 1.10 16 13 N -0.53 -10.40 5.16 -231.25 -1.19 -11.60 16 14 C 0.06 0.95 4.45 -3.83 -0.02 0.94 16 15 C 0.06 0.87 3.09 -26.66 -0.08 0.78 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 17 C 0.03 0.36 6.34 37.23 0.24 0.59 16 18 O -0.38 -4.75 10.85 -48.78 -0.53 -5.28 16 19 C 0.02 0.24 7.05 37.23 0.26 0.50 16 20 C 0.02 0.26 7.05 37.23 0.26 0.52 16 21 O -0.36 -5.42 7.53 -48.78 -0.37 -5.79 16 22 C 0.05 1.00 6.45 -2.84 -0.02 0.99 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.07 1.78 7.65 -51.93 -0.40 1.39 16 25 H 0.05 1.38 8.05 -51.93 -0.42 0.96 16 26 H 0.06 1.29 7.40 -51.93 -0.38 0.91 16 27 H 0.03 0.72 7.25 -51.93 -0.38 0.34 16 28 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 29 H 0.04 0.62 7.85 -51.93 -0.41 0.22 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.07 1.53 7.65 -51.92 -0.40 1.14 16 37 H 0.03 0.63 7.55 -51.93 -0.39 0.24 16 LS Contribution 291.06 15.07 4.39 4.39 Total: -1.00 -30.19 291.06 -8.30 -38.49 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.10 Total: -1.91 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.15 Total: -9.53 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: -0.51 Total: -36.82 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.90 Total: -11.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.19 -8.30 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690651240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.350 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds